genome.fa.s1111.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001111.1 Hibiscus syriacus cultivar Beakdansim tig00002193_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3891333

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  17  of  17  ( 1987 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3707954--3708003	21	2.4	21	75	0	55	42	26	12	20	1.86
3713828--3713893	23	2.9	23	82	8	55	28	25	16	28	1.97
3713858--3713919	21	2.8	22	83	13	67	30	20	16	32	1.95
3719760--3719875	46	2.6	46	83	5	130	28	23	20	27	1.99
3719794--3719870	23	3.3	23	96	0	145	27	25	22	24	2.00
3726582--3726663	22	3.7	22	71	18	62	34	23	17	25	1.96
3732948--3733348	37	10.7	37	80	11	369	46	3	5	45	1.42
3732951--3733339	114	3.4	114	82	10	458	46	3	5	45	1.42
3733399--3733441	13	3.3	13	83	0	59	11	6	0	81	0.87
3733445--3733475	12	2.7	12	95	5	55	29	25	35	9	1.88
3734487--3734541	25	2.2	25	83	6	67	18	9	0	72	1.10
3738279--3738522	94	2.5	97	88	6	365	33	16	18	31	1.93
3739668--3740249	85	6.8	85	85	0	707	35	19	18	27	1.95
3739665--3740339	255	2.6	252	81	3	742	35	19	17	26	1.95
3741041--3741429	37	10.6	36	82	9	423	45	3	6	44	1.45
3741052--3741429	111	3.4	109	85	6	483	44	3	6	44	1.46
3741484--3741545	18	3.3	18	73	13	63	17	3	1	77	0.98
3741484--3741541	30	1.9	30	86	10	82	18	3	1	75	1.03
3741486--3741551	13	5.3	13	74	13	50	16	4	1	77	1.01
3745685--3745764	34	2.4	34	97	0	151	38	20	16	25	1.92
3745770--3745823	22	2.6	21	82	8	74	35	14	22	27	1.93
3745742--3745920	95	1.9	94	86	3	252	34	15	24	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3746220--3746426	59	3.5	59	84	1	272	37	14	16	32	1.88
3746648--3747047	68	5.9	68	87	0	568	31	15	24	28	1.96
3746989--3747387	81	4.9	81	89	0	611	35	12	23	28	1.91
3749403--3749429	10	2.7	10	100	0	54	0	11	0	88	0.50
3752349--3752540	1	192.0	1	68	0	114	84	0	0	15	0.63
3752345--3752618	6	46.7	6	96	2	389	79	0	4	16	0.89
3758717--3758772	29	1.9	30	85	10	80	69	5	10	14	1.34
3763710--3763817	21	5.2	21	73	7	78	20	18	26	34	1.96
3763710--3763817	42	2.6	42	82	7	123	20	18	26	34	1.96
3763840--3763892	21	2.6	21	87	3	81	26	16	20	35	1.94
3776893--3776948	23	2.5	23	97	2	105	37	12	26	23	1.90
3779095--3779119	12	2.1	12	100	0	50	32	0	8	60	1.26
3780975--3781024	24	2.0	27	84	11	70	50	0	0	50	1.00
3782137--3782255	60	2.0	60	100	0	238	47	12	5	35	1.64
3788492--3788599	42	2.6	42	85	4	139	19	18	28	33	1.96
3788492--3788599	21	5.2	21	72	9	78	19	18	28	33	1.96
3788622--3788678	21	2.8	21	89	2	89	24	19	22	33	1.97
3788622--3788679	20	2.8	21	89	5	82	24	18	22	34	1.96
3804054--3804100	24	2.0	24	100	0	94	21	25	12	40	1.89
3805363--3805408	24	1.9	24	100	0	92	43	13	10	32	1.78
3806527--3806867	55	6.2	55	81	4	368	28	18	16	35	1.93
3806563--3806863	108	2.8	108	83	7	374	28	18	16	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3807208--3807261	19	2.6	21	80	8	67	31	16	14	37	1.89
3813889--3814173	55	5.2	54	86	5	360	28	18	18	34	1.95
3813912--3814175	109	2.4	109	90	3	397	28	18	17	35	1.94
3815492--3815558	23	2.9	23	73	10	64	20	20	19	38	1.93
3819269--3819402	72	1.9	71	80	7	155	27	21	16	34	1.95
3819491--3819551	30	2.0	30	87	6	88	16	21	18	44	1.87
3823916--3824008	46	2.0	47	85	4	125	20	21	12	45	1.84
3823910--3824080	72	2.4	73	90	1	281	22	21	12	44	1.85
3823997--3824482	46	10.5	46	81	5	525	21	22	10	45	1.82
3824021--3824146	20	5.7	20	72	20	99	23	25	11	40	1.87
3824304--3824469	20	7.4	20	65	21	71	20	24	10	44	1.82
3824002--3824482	185	2.6	181	83	7	569	21	21	10	45	1.82
3842353--3842474	49	2.5	49	89	4	183	36	14	21	27	1.93
3842557--3842599	21	2.1	20	86	4	59	65	0	18	16	1.28
3843181--3843260	23	3.4	23	84	1	88	32	21	8	37	1.84
3845187--3845417	125	1.8	125	91	3	385	41	3	25	29	1.71
3845739--3845794	21	2.7	21	88	5	69	35	10	32	21	1.88
3845739--3845781	21	2.0	21	100	0	86	37	9	34	18	1.83
3865729--3865761	17	2.1	17	88	11	52	18	30	9	42	1.81
3874077--3874792	22	32.5	22	89	2	1073	48	11	0	39	1.42
3874825--3874852	10	2.8	10	100	0	56	32	7	28	32	1.84
3883172--3883238	31	2.2	31	88	0	98	23	19	29	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3885601--3885643	18	2.4	18	84	7	52	58	0	2	39	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17

The End!