genome.fa.s250.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000250.1 Hibiscus syriacus cultivar Beakdansim tig00000452_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2850692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1407 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2630864--2630908	13	3.5	13	84	0	54	26	20	20	33	1.97
2630887--2631180	84	3.5	85	88	2	432	29	20	15	34	1.94
2630887--2631217	84	4.0	83	84	3	362	29	20	16	32	1.95
2631237--2631313	2	40.5	2	86	10	108	50	0	0	49	1.00
2633920--2633969	24	2.1	24	100	0	100	50	28	4	18	1.65
2635378--2635432	15	3.7	15	95	0	92	7	20	12	60	1.56
2638767--2638840	36	2.2	31	83	11	85	40	10	36	12	1.78
2642615--2642653	18	2.2	18	85	0	51	43	10	12	33	1.77
2644591--2644700	31	3.4	31	72	16	114	36	21	20	20	1.95
2648914--2648952	20	2.0	20	84	0	51	33	15	2	48	1.58
2651598--2651670	35	2.1	35	100	0	146	35	10	19	34	1.87
2669064--2669166	36	2.8	37	85	5	136	19	6	41	32	1.78
2680482--2680527	21	2.2	21	96	0	83	17	13	8	60	1.56
2681975--2682070	21	4.5	21	84	10	131	21	10	23	43	1.84
2681967--2682070	44	2.4	41	90	6	154	24	9	25	41	1.85
2686328--2686442	61	1.9	61	92	0	194	29	27	19	23	1.98
2687965--2688052	30	2.9	30	81	6	106	31	19	6	42	1.77
2693611--2693662	23	2.3	23	96	0	95	26	28	28	15	1.96
2706735--2706769	15	2.3	15	100	0	70	31	25	20	22	1.98
2707794--2707850	22	2.4	24	88	8	82	40	7	28	24	1.81
2711017--2711059	22	2.0	22	82	13	54	46	16	0	37	1.47
2714886--2714925	20	2.0	21	95	5	73	27	20	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2714938--2714971	18	1.9	18	88	5	52	17	23	17	41	1.90
2715937--2715967	12	2.5	13	89	10	55	51	6	6	35	1.53
2719188--2719233	20	2.3	20	88	3	67	39	23	0	36	1.55
2722022--2722066	21	2.1	21	84	8	56	28	13	4	53	1.59
2725722--2725752	2	15.5	2	100	0	62	48	0	0	51	1.00
2726254--2726401	72	2.0	74	93	5	257	39	4	3	52	1.37
2726641--2726700	28	2.2	27	82	8	68	51	0	1	46	1.10
2728061--2728100	3	13.3	3	89	0	62	60	2	2	35	1.24
2728369--2728736	122	3.1	123	81	8	438	25	19	16	38	1.92
2728415--2728860	111	3.9	113	84	6	483	25	19	16	38	1.92
2730370--2730434	19	3.4	19	77	8	60	10	10	0	78	0.97
2730399--2730429	10	3.2	10	95	4	55	0	9	0	90	0.46
2730399--2730435	9	4.0	9	89	6	56	2	10	0	86	0.67
2730399--2730435	19	1.9	19	94	0	65	2	10	0	86	0.67
2733965--2733995	9	3.6	9	91	8	55	54	0	22	22	1.44
2735880--2735978	49	2.0	49	100	0	198	31	28	8	32	1.86
2736755--2736786	15	2.1	15	94	0	55	46	9	18	25	1.79
2740087--2740144	28	2.2	26	84	6	71	60	1	5	32	1.29
2742213--2742249	3	12.3	3	94	0	65	62	0	2	35	1.10
2743364--2743393	15	1.9	16	93	6	53	33	20	0	46	1.51
2746314--2746357	4	10.8	4	87	4	61	79	0	2	18	0.83
2746313--2746363	21	2.4	21	93	0	84	80	0	3	15	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2746296--2746357	29	2.1	29	90	0	97	74	4	3	17	1.13
2746287--2746357	25	2.7	27	83	12	85	74	4	2	18	1.10
2746427--2746460	18	1.9	17	94	5	59	70	0	2	26	1.01
2746516--2746544	3	9.7	3	100	0	58	68	0	0	31	0.89
2748044--2748320	84	3.3	83	77	6	213	27	16	22	32	1.96
2749548--2749743	95	2.1	94	86	3	277	31	18	16	32	1.94
2753500--2753533	14	2.4	14	90	0	59	70	0	2	26	1.01
2756582--2756794	112	1.9	112	85	3	295	41	24	9	24	1.84
2760332--2760466	29	4.7	29	84	1	146	44	22	8	25	1.80
2760332--2760466	58	2.3	58	87	0	180	44	22	8	25	1.80
2760466--2760513	17	3.1	16	70	29	50	12	25	43	18	1.85
2767793--2767902	57	1.9	58	90	1	177	45	21	10	22	1.81
2767793--2767902	29	3.8	29	92	1	177	45	21	10	22	1.81
2767933--2767957	5	5.0	5	100	0	50	0	20	60	20	1.37
2775672--2776094	53	8.0	53	87	0	596	28	16	17	37	1.92
2775676--2776092	211	2.0	212	88	0	629	28	15	17	38	1.91
2778271--2778322	2	26.0	2	100	0	104	50	0	0	50	1.00
2796959--2797432	53	8.9	53	87	0	662	29	15	18	36	1.92
2798319--2798352	11	3.0	11	86	4	50	61	17	0	20	1.34
2801072--2801096	8	3.1	8	100	0	50	40	12	0	48	1.40
2803759--2803804	17	2.7	17	83	12	51	52	10	2	34	1.49
2812294--2812342	25	2.0	25	84	7	66	53	2	0	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2812511--2812554	20	2.2	19	88	8	61	68	0	0	31	0.90
2812508--2812605	27	3.6	26	73	10	81	67	3	1	28	1.12
2813936--2813999	9	7.1	9	78	0	56	60	0	0	39	0.97
2813933--2813999	12	6.1	12	78	16	58	61	0	0	38	0.96
2813933--2813997	15	4.3	15	80	7	78	63	0	0	36	0.95
2813967--2814006	12	3.5	11	83	10	53	60	0	0	40	0.97
2813937--2814010	27	2.7	27	75	19	82	63	0	0	36	0.95
2814239--2814487	113	2.2	113	86	4	349	30	18	14	36	1.91
2814481--2815801	113	11.7	113	89	2	1893	29	17	14	38	1.89
2814691--2814735	23	1.9	23	82	13	56	15	24	6	53	1.66
2816504--2816729	114	2.0	114	89	1	346	29	19	15	34	1.93
2817915--2817949	16	2.2	16	94	0	61	60	2	5	31	1.35
2829537--2829585	25	2.0	25	84	7	66	51	2	2	44	1.24
2829745--2829804	17	3.7	15	73	20	50	63	0	1	35	1.05
2829753--2829796	20	2.2	19	88	8	61	68	0	0	31	0.90
2829764--2829847	27	3.2	26	73	8	80	66	3	1	28	1.15
2831184--2831247	9	7.1	9	78	0	56	60	0	0	39	0.97
2831181--2831247	12	6.1	12	78	16	58	61	0	0	38	0.96
2831181--2831245	15	4.3	15	80	7	78	63	0	0	36	0.95
2831215--2831254	12	3.5	11	83	10	53	60	0	0	40	0.97
2831185--2831258	27	2.7	27	75	19	82	63	0	0	36	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!