genome.fa.s250.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000250.1 Hibiscus syriacus cultivar Beakdansim tig00000452_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2850692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  8  of  12  ( 1407 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1735461--1735547	37	2.4	37	88	1	122	25	20	13	40	1.89
1735366--1735613	102	2.4	105	87	4	360	31	20	12	35	1.90
1735497--1735676	66	2.8	66	89	4	269	31	21	11	35	1.89
1735628--1735713	37	2.4	36	82	5	104	29	20	11	38	1.88
1735563--1735909	100	3.5	99	87	5	465	31	19	11	37	1.87
1735393--1735778	166	2.3	169	90	4	613	31	20	12	36	1.89
1735729--1735983	36	7.4	36	73	15	127	29	18	11	40	1.86
1735797--1735855	30	2.0	30	86	6	84	40	16	10	32	1.82
1735869--1735983	36	3.1	36	86	4	167	29	19	11	40	1.86
1736407--1736658	106	2.4	107	84	2	337	35	24	17	21	1.95
1737733--1737771	14	2.7	14	88	11	53	35	0	0	64	0.94
1739587--1739666	18	4.6	17	77	12	65	50	3	1	45	1.28
1739592--1739635	2	22.5	2	95	4	81	47	0	0	52	1.00
1748082--1748107	3	8.7	3	100	0	52	65	0	0	34	0.93
1748132--1748215	19	4.2	20	71	19	77	48	3	1	46	1.27
1748146--1748235	19	4.9	17	69	21	56	48	5	2	43	1.38
1748127--1748203	40	1.9	40	86	5	111	49	2	1	46	1.23
1748572--1748604	14	2.4	14	94	0	57	30	30	6	33	1.82
1752208--1752255	24	1.9	25	91	8	80	43	14	12	29	1.82
1752619--1752644	10	2.6	10	100	0	52	19	11	19	50	1.77
1758596--1758644	22	2.2	22	88	0	71	42	18	20	18	1.89
1759453--1759498	24	1.9	24	95	0	83	43	13	13	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1760692--1760763	30	2.4	30	77	13	76	31	18	9	40	1.83
1772269--1772324	23	2.3	26	81	9	73	55	0	3	41	1.17
1773907--1773970	3	21.3	3	90	6	103	65	0	0	34	0.93
1774130--1774406	120	2.3	120	89	3	409	25	17	16	40	1.90
1774326--1774885	113	5.0	113	85	4	724	29	17	13	38	1.89
1774326--1774885	222	2.5	220	84	5	721	29	17	13	38	1.89
1775673--1776612	92	10.2	92	96	0	1661	35	21	13	29	1.92
1777595--1777667	9	8.3	9	80	11	80	0	17	0	82	0.68
1777599--1777667	13	5.2	13	84	5	75	0	17	0	82	0.67
1777601--1777667	26	2.5	26	88	11	109	0	17	0	82	0.68
1777601--1777663	4	15.8	4	83	9	76	0	17	0	82	0.67
1784784--1784815	15	2.1	15	94	0	55	46	9	18	25	1.79
1788113--1788198	30	2.9	30	76	8	70	63	1	9	25	1.31
1788128--1788198	28	2.4	31	77	15	78	63	1	9	25	1.34
1788665--1788720	23	2.3	26	81	9	73	55	0	3	41	1.17
1790310--1790361	3	17.3	3	100	0	104	67	0	0	32	0.91
1791842--1791893	26	1.9	28	85	14	74	30	7	9	51	1.62
1792401--1792454	24	2.3	24	75	12	58	35	5	5	53	1.48
1808782--1809179	59	6.8	59	92	0	647	36	18	11	33	1.86
1808782--1809179	176	2.3	176	91	1	654	36	18	11	33	1.86
1809542--1809585	19	2.3	19	96	0	79	31	25	13	29	1.94
1816772--1816824	24	2.2	24	83	6	63	24	5	16	52	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1818199--1818224	2	13.0	2	100	0	52	50	0	0	50	1.00
1818512--1818594	27	3.0	28	78	8	71	54	3	2	39	1.31
1818512--1818571	29	2.1	29	84	6	77	51	5	1	41	1.33
1818532--1818598	27	2.4	29	77	10	75	53	1	2	41	1.25
1831054--1831122	17	4.0	17	75	7	59	37	8	13	40	1.75
1836723--1836747	2	12.5	2	100	0	50	52	0	0	48	1.00
1837502--1837534	17	2.0	17	88	5	50	63	12	0	24	1.28
1838182--1838314	37	3.5	36	79	12	133	39	4	8	48	1.54
1848502--1848593	30	3.1	30	88	0	148	57	14	18	9	1.64
1857626--1858049	54	7.9	54	85	3	577	33	16	17	32	1.92
1857626--1858040	215	1.9	216	91	1	672	33	16	17	32	1.92
1860700--1860744	22	2.0	22	83	16	56	37	0	13	48	1.42
1860705--1860751	22	2.2	21	84	3	58	38	2	12	46	1.54
1860721--1860915	38	5.5	37	69	23	143	44	4	9	42	1.57
1860788--1860845	24	2.4	24	88	5	82	44	6	6	41	1.58
1860745--1860889	63	2.4	62	89	3	213	45	5	8	40	1.57
1860805--1860909	39	2.7	38	85	12	151	47	6	6	39	1.56
1860875--1860903	14	2.1	14	100	0	58	41	6	6	44	1.58
1860812--1860947	39	3.6	37	81	12	127	43	5	8	41	1.60
1862545--1862571	12	2.2	12	100	0	54	55	7	14	22	1.64
1862889--1862918	11	2.6	12	89	10	53	53	6	6	33	1.53
1863690--1863942	126	2.0	126	100	0	506	26	22	35	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1864157--1864236	35	2.2	36	80	12	85	32	8	3	55	1.49
1865853--1865909	21	2.6	22	81	10	73	17	17	21	43	1.88
1866537--1866846	5	63.2	5	92	7	521	61	0	0	38	0.96
1867084--1867131	19	2.6	19	86	3	71	43	8	2	45	1.45
1868024--1868061	2	19.0	2	100	0	76	50	0	0	50	1.00
1869131--1869178	21	2.3	20	82	10	53	14	4	2	79	0.98
1878630--1878750	61	1.9	63	85	6	165	53	11	23	11	1.69
1878728--1878787	8	8.1	7	87	12	77	80	3	16	0	0.85
1878730--1878787	23	2.5	23	86	13	84	79	3	17	0	0.87
1883784--1883839	21	2.6	21	81	13	69	16	17	23	42	1.88
1884479--1884663	5	38.0	5	93	6	319	59	0	0	40	0.97
1884878--1884910	9	3.7	9	95	0	57	45	15	0	39	1.46
1884901--1884948	19	2.6	19	86	3	71	43	8	2	45	1.45
1894411--1894466	22	2.5	22	91	0	85	16	17	25	41	1.89
1895681--1895853	95	1.8	95	81	2	213	29	14	24	31	1.95
1895801--1895855	22	2.7	20	81	10	65	29	12	32	25	1.93
1896178--1896642	59	7.9	59	91	1	731	35	10	21	32	1.89
1896178--1896642	234	2.0	235	90	2	747	35	10	21	32	1.89
1898962--1899046	32	2.7	30	78	10	89	30	31	24	12	1.93
1899164--1899258	12	7.9	12	75	9	86	56	13	13	15	1.67
1899164--1899258	24	4.0	24	83	5	104	56	13	13	15	1.67
1904275--1904679	59	6.9	59	92	1	643	33	11	22	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1906328--1906383	26	2.2	25	84	9	69	69	8	3	17	1.29
1919699--1919739	13	3.1	13	82	6	55	24	12	9	53	1.68
1922834--1922920	43	2.0	44	88	2	131	34	22	11	31	1.90
1927520--1927565	24	1.9	24	81	0	56	47	17	21	13	1.81
1928520--1928675	20	7.7	20	77	6	102	33	25	17	23	1.96
1928560--1928691	20	6.5	20	86	5	151	31	28	18	21	1.97
1929510--1929563	24	2.2	24	90	0	81	22	18	18	40	1.91
1931826--1931860	18	1.9	18	94	0	61	54	25	2	17	1.57
1931918--1932318	140	2.9	140	96	1	729	27	12	15	44	1.82
1932329--1932457	20	6.4	20	88	0	195	32	22	19	25	1.97
1932496--1932573	20	3.9	20	86	0	102	14	17	24	43	1.86
1932695--1932729	14	2.5	14	100	0	70	48	20	0	31	1.50
1934032--1934148	21	5.6	21	73	2	92	23	17	35	23	1.95
1934069--1934149	42	1.9	42	84	0	108	23	14	38	23	1.92
1934629--1934672	20	2.2	20	91	0	70	52	22	11	13	1.72
1934663--1934707	20	2.2	20	80	0	54	35	24	17	22	1.95
1934741--1934778	20	1.9	20	100	0	76	47	15	21	15	1.82
1934773--1934818	19	2.4	19	88	0	65	13	15	26	45	1.82
1934856--1934910	20	2.8	19	86	5	74	21	20	18	40	1.92
1936847--1936952	20	5.4	20	80	3	99	46	22	16	15	1.84
1936910--1936952	19	2.3	19	88	8	61	44	23	18	13	1.86
1937342--1937400	22	2.7	22	83	0	82	23	18	38	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1937568--1937633	20	3.2	20	79	12	89	22	18	28	30	1.97
1937580--1937651	21	3.5	21	81	11	103	19	18	26	36	1.94
1937538--1937659	41	3.0	41	91	0	181	25	17	23	33	1.96
1937536--1937673	41	3.4	41	87	0	159	27	15	23	33	1.95
1942633--1942969	131	2.6	131	79	3	358	32	10	14	41	1.81
1944702--1944738	16	2.3	16	100	0	74	43	18	27	10	1.83
1948743--1949117	112	3.3	112	84	4	479	31	25	14	28	1.95
1950145--1950467	159	2.0	162	97	2	616	37	20	9	31	1.85
1954052--1954085	15	2.3	15	94	0	59	29	8	0	61	1.26
1956210--1956255	12	3.7	12	82	8	56	36	4	0	58	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12