genome.fa.s250.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000250.1 Hibiscus syriacus cultivar Beakdansim tig00000452_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2850692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  2  of  12  ( 1407 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259581--259632	20	2.5	20	84	9	61	76	0	5	17	0.97
259572--259662	25	3.5	26	80	8	73	73	1	4	20	1.07
259597--259662	4	16.5	4	74	22	59	71	0	3	25	1.01
259598--259664	7	9.6	7	76	22	61	70	0	2	26	1.02
259598--259665	20	3.6	19	75	23	72	69	0	2	27	1.03
259683--260029	37	9.1	37	80	15	354	45	6	1	46	1.38
259777--259806	2	15.5	2	93	6	53	46	0	0	53	1.00
259740--259838	48	2.1	47	90	3	153	46	6	1	46	1.34
259790--259972	72	2.6	66	81	13	208	46	7	0	45	1.34
259801--259964	11	14.1	11	64	24	52	46	7	0	45	1.35
285291--285430	73	1.9	73	91	2	228	38	6	10	44	1.65
293463--293502	21	1.9	21	85	10	55	35	10	2	52	1.48
296502--296554	27	2.0	27	81	7	63	7	5	24	62	1.44
301321--301368	20	2.5	18	81	15	60	31	10	18	39	1.85
302803--302857	21	2.6	21	94	0	92	27	21	14	36	1.93
304584--304628	19	2.4	19	96	0	81	35	17	13	33	1.89
304615--304678	29	2.1	31	85	5	87	46	6	12	34	1.67
311718--311818	36	2.8	36	75	10	98	38	17	16	26	1.92
316190--316318	36	3.6	36	75	5	127	37	18	17	27	1.93
318186--318225	20	2.0	20	85	0	53	42	20	22	15	1.88
318687--318812	47	2.8	46	83	5	150	29	21	8	40	1.83
326007--326132	47	2.8	44	82	10	146	28	23	8	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339712--339877	75	2.2	75	80	6	185	22	21	26	29	1.99
347080--347182	23	4.8	21	75	12	93	23	20	32	24	1.98
349528--349563	13	2.8	13	95	0	63	50	0	8	41	1.33
351658--351758	44	2.3	43	81	8	107	23	19	27	28	1.99
359366--359398	16	2.1	15	94	5	57	84	0	6	9	0.76
360796--361469	84	8.0	84	84	1	710	25	17	22	33	1.96
360821--361469	252	2.6	249	84	4	820	25	18	22	33	1.96
361472--361812	121	2.8	121	87	0	468	27	18	21	32	1.97
362013--362130	43	2.7	43	88	0	173	22	18	26	33	1.97
362714--362802	32	2.8	32	82	0	97	31	25	12	30	1.92
363823--363875	16	3.2	16	89	2	70	1	15	7	75	1.11
364606--364662	30	1.9	30	96	0	105	54	21	10	14	1.69
364611--364673	30	2.1	30	85	2	83	57	22	7	12	1.61
369254--369293	20	2.0	21	85	5	55	25	17	10	47	1.78
369274--369401	65	2.0	65	100	0	256	31	14	9	45	1.76
371424--371579	65	2.4	65	84	5	183	29	17	22	30	1.97
376473--376635	74	2.2	75	80	5	179	24	17	25	32	1.97
379529--379587	13	4.5	13	82	0	64	27	20	18	33	1.96
379750--379785	2	18.5	2	94	5	65	47	0	0	52	1.00
381623--381653	12	2.6	12	94	0	53	70	9	6	12	1.31
382184--382267	26	3.3	26	64	3	62	1	36	9	52	1.42
382191--382361	89	1.9	90	92	1	290	0	35	9	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385073--385097	13	1.9	13	100	0	50	0	44	8	48	1.32
385480--385519	20	2.0	20	95	0	71	27	10	2	60	1.42
387082--387409	168	1.9	170	98	1	633	41	10	10	37	1.75
388361--388421	31	1.9	31	83	3	77	21	11	14	52	1.73
390645--390709	3	21.7	3	81	6	78	38	3	0	58	1.14
391189--391213	13	1.9	13	100	0	50	80	4	16	0	0.87
401479--401527	7	7.3	7	78	17	50	81	0	14	4	0.83
401479--401543	12	5.1	12	81	15	69	80	0	16	3	0.85
402676--403128	50	9.1	50	98	0	861	23	13	24	38	1.91
403856--404416	119	4.8	119	95	1	945	37	13	20	27	1.90
404666--404763	3	33.0	3	84	2	126	32	3	0	64	1.09
404652--404761	12	9.8	11	78	15	59	30	4	0	65	1.12
405258--405282	13	1.9	13	100	0	50	80	4	16	0	0.87
408892--409006	44	2.7	42	77	7	106	21	20	16	41	1.90
408889--409235	43	8.1	42	81	5	338	19	20	17	42	1.89
408897--409235	129	2.6	127	85	2	417	19	20	16	43	1.88
410987--411030	18	2.4	18	81	11	54	22	0	6	70	1.11
410961--411023	32	2.0	32	84	12	85	23	0	11	65	1.25
411703--411745	19	2.3	19	88	4	61	27	2	0	69	1.00
418717--418778	32	1.9	32	84	12	83	25	0	11	62	1.28
418698--418808	24	4.5	24	68	20	84	28	0	12	58	1.35
418707--418845	19	7.2	19	70	14	63	30	0	12	57	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418759--418880	64	1.9	63	88	5	183	30	0	13	54	1.45
421481--421773	41	7.1	41	72	9	184	32	17	17	33	1.93
421446--421827	82	4.7	82	79	3	358	32	16	18	32	1.93
421481--421825	165	2.1	162	83	3	431	32	17	17	32	1.93
424144--424210	29	2.3	29	100	0	134	32	25	23	17	1.97
425318--425387	32	2.2	32	100	0	140	37	7	2	52	1.44
428153--428283	65	2.0	65	100	0	262	30	19	12	37	1.89
430590--430617	9	3.1	9	100	0	56	32	0	0	67	0.91
430693--430736	21	2.0	22	91	4	72	61	0	0	38	0.96
431180--431337	21	7.8	20	72	7	86	38	25	17	18	1.92
431304--431457	20	7.7	20	79	7	159	37	26	17	18	1.93
431304--431458	40	3.8	40	80	4	177	38	26	17	18	1.92
431840--431910	33	2.2	33	92	0	115	11	22	18	47	1.80
431989--432066	41	1.9	41	97	0	147	44	16	25	12	1.83
431990--432065	21	3.7	21	83	3	109	46	17	25	11	1.82
432042--432122	33	2.5	33	91	0	126	48	22	20	8	1.77
432118--432201	19	4.7	19	80	14	106	10	21	21	46	1.81
432159--432215	14	3.7	14	75	20	60	8	24	22	43	1.81
432140--432223	33	2.5	33	100	0	168	9	23	20	46	1.80
433921--434203	93	3.1	93	98	0	541	22	12	19	45	1.84
434287--434379	33	2.8	32	95	4	168	46	30	17	6	1.73
434251--434379	52	2.4	54	75	19	137	45	30	16	7	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434251--434379	19	7.3	19	77	17	143	45	30	16	7	1.75
434375--434509	19	7.6	19	75	16	128	11	19	23	45	1.82
434397--434453	14	3.7	14	77	20	60	10	21	22	45	1.82
434380--434472	33	2.8	33	95	0	168	10	20	21	47	1.80
436435--436470	14	2.6	14	95	0	63	33	0	22	44	1.53
436577--436674	19	5.4	19	82	13	134	46	17	21	14	1.83
436577--436693	53	2.2	53	95	1	209	44	17	23	13	1.85
436683--436904	19	12.7	19	76	18	241	14	21	18	45	1.85
436689--436818	33	3.8	33	87	9	197	14	21	17	46	1.84
436683--436876	52	3.7	52	90	4	241	14	22	17	45	1.85
436683--436837	71	2.2	71	97	0	292	15	21	17	45	1.85
436811--436918	33	3.2	33	85	7	164	13	21	18	46	1.84
436811--436937	33	3.8	34	83	7	161	14	20	19	45	1.85
439401--439447	24	2.0	24	87	8	69	38	21	14	25	1.92
440130--440400	20	13.5	20	82	2	274	19	16	24	39	1.92
440130--440400	40	6.8	40	87	3	330	19	16	24	39	1.92
440387--440465	21	3.8	21	75	0	77	24	17	22	35	1.95
440172--440408	121	2.0	121	80	5	266	21	16	24	37	1.93
440367--440465	42	2.4	43	78	8	107	22	18	22	37	1.94
447131--447193	24	2.9	23	73	24	64	17	7	11	63	1.50
448665--448725	23	2.7	23	89	0	95	31	27	24	16	1.96
453289--453374	23	3.8	23	90	1	120	31	25	24	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454382--454445	24	2.7	24	97	2	121	26	25	17	31	1.97
457442--457577	40	3.3	39	71	17	114	23	17	33	25	1.96
459075--459116	17	2.7	15	82	13	57	59	23	0	16	1.37
461093--461155	21	2.9	21	80	4	72	17	25	34	22	1.95
464844--464883	21	1.9	21	85	10	55	35	10	2	52	1.48
467175--467338	36	5.0	35	66	28	108	42	14	19	23	1.87
467212--467317	29	3.4	29	68	25	81	41	12	20	25	1.87
467176--467420	65	3.8	65	90	2	330	41	12	18	26	1.87
467589--467701	36	3.1	36	85	2	165	40	8	18	31	1.81
467589--467739	37	4.1	37	81	6	164	39	11	19	29	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12