genome.fa.s250.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000250.1 Hibiscus syriacus cultivar Beakdansim tig00000452_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2850692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  4  of  12  ( 1407 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698382--698421	21	1.9	21	94	0	71	20	20	25	35	1.96
699076--699100	13	1.9	13	100	0	50	44	16	0	40	1.47
701212--701265	21	2.6	21	96	0	99	33	18	25	22	1.97
707580--707623	21	2.2	20	87	4	61	0	6	11	81	0.86
710094--710172	38	2.0	38	80	9	88	53	1	3	41	1.27
710129--710155	13	2.1	13	100	0	54	55	0	0	44	0.99
710129--710171	13	3.1	14	86	6	52	55	0	2	41	1.12
711919--711965	24	1.9	25	86	4	69	57	4	0	38	1.18
711912--712024	31	3.5	31	76	17	106	51	2	3	42	1.33
711975--712036	14	4.4	14	74	11	54	43	1	8	46	1.42
712113--712158	21	2.2	21	92	0	74	43	0	8	47	1.34
712120--712165	21	2.2	21	84	0	56	45	2	8	43	1.47
712499--712538	2	19.0	2	85	10	53	45	2	2	50	1.28
712488--712542	26	2.1	27	86	10	78	43	3	5	47	1.44
712930--712963	17	2.1	17	89	10	54	44	5	0	50	1.26
712887--713083	96	2.0	96	80	7	220	43	6	3	46	1.45
713079--713131	18	2.9	18	85	2	61	50	1	3	43	1.30
718761--718806	18	2.4	19	89	7	67	0	45	8	45	1.34
725891--726012	64	1.9	63	90	5	192	55	13	0	30	1.39
725926--725988	19	3.2	19	75	4	54	55	11	0	33	1.35
725966--726013	25	2.0	24	83	4	60	60	14	0	25	1.34
730548--730589	17	2.4	18	80	11	52	76	0	2	21	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730639--730682	19	2.4	18	84	3	52	75	2	4	18	1.09
732798--732842	19	2.4	19	96	0	81	40	13	6	40	1.71
736908--737035	21	6.2	21	81	5	127	33	25	8	32	1.86
736873--737046	41	4.3	40	78	5	152	33	26	10	29	1.89
736873--737046	20	8.5	21	79	5	126	33	26	10	29	1.89
736873--737006	62	2.2	61	81	6	155	35	27	10	26	1.89
740289--740323	6	5.8	6	86	0	52	60	20	2	17	1.49
740290--740330	18	2.3	18	95	0	73	56	24	2	17	1.53
742060--742119	21	2.9	21	82	0	84	21	18	40	20	1.92
743603--743651	20	2.5	20	86	0	71	53	18	16	12	1.73
744018--744104	22	4.0	22	83	2	88	25	17	39	18	1.92
744208--744245	20	2.0	20	84	5	51	44	13	15	26	1.83
744287--744327	21	2.0	21	90	0	64	26	14	26	31	1.95
746970--747021	2	26.0	2	100	0	104	50	0	0	50	1.00
752972--753135	65	2.5	64	83	7	224	27	15	26	30	1.96
753086--753132	19	2.5	19	83	10	62	25	17	31	25	1.97
752976--753182	65	3.2	61	80	11	200	27	16	24	30	1.97
753352--753391	20	2.0	21	85	14	57	45	7	5	42	1.54
760515--760678	65	2.5	64	83	5	222	26	16	26	30	1.97
760629--760675	19	2.5	19	83	10	62	25	17	31	25	1.97
760519--760725	65	3.2	62	79	12	195	27	17	24	30	1.97
760895--760934	20	2.0	21	85	14	57	45	7	5	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
761020--761070	12	4.1	12	74	18	50	66	9	9	13	1.44
766895--766944	12	4.1	12	74	23	50	66	10	10	14	1.46
769693--769853	81	2.0	81	96	0	295	47	13	18	21	1.82
770835--770911	31	2.4	32	80	8	86	31	27	27	14	1.95
772212--772579	183	2.0	184	99	0	729	32	14	14	38	1.87
772509--772651	70	2.0	70	100	0	286	34	11	18	34	1.87
776568--776647	36	2.2	36	100	0	160	43	8	18	28	1.80
779993--780039	22	2.1	22	100	0	94	65	17	8	8	1.44
786081--786117	6	6.2	6	100	0	74	67	16	16	0	1.23
789094--789293	83	2.4	83	82	5	235	34	15	16	34	1.90
790673--790707	17	2.1	17	94	0	61	17	48	25	8	1.75
790702--790861	29	5.6	29	84	0	196	35	5	22	37	1.76
790702--790863	58	2.8	57	84	2	216	34	4	22	38	1.76
791879--791932	26	2.1	26	89	0	81	27	7	16	48	1.73
798006--798065	27	2.2	27	84	0	84	21	48	18	11	1.80
798039--798071	17	1.9	17	93	0	57	24	45	21	9	1.80
798070--798202	60	2.2	59	88	4	187	38	2	21	38	1.66
798070--798202	30	4.5	29	83	4	158	38	2	21	38	1.66
799218--799271	26	2.1	26	89	0	81	27	5	16	50	1.68
808740--808854	40	2.9	39	74	14	103	53	1	9	35	1.44
810203--810227	7	3.6	7	100	0	50	28	12	12	48	1.76
816902--816981	35	2.3	35	100	0	160	35	6	18	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
819750--819870	35	3.4	35	75	6	118	34	23	18	23	1.96
820997--821056	27	2.2	27	90	0	93	35	13	6	45	1.70
821006--821058	27	2.0	27	100	0	106	33	16	7	41	1.77
821636--821677	16	2.6	16	88	0	66	28	28	26	16	1.97
822478--822525	22	2.2	22	92	0	78	35	20	22	20	1.96
821362--823066	854	2.0	847	88	1	2545	33	19	22	24	1.97
832259--832304	20	2.3	19	85	14	58	26	15	8	50	1.73
846229--846301	20	3.6	20	82	12	87	21	31	17	28	1.97
848130--848208	17	4.5	17	75	10	61	31	7	13	46	1.72
848176--848224	17	2.9	17	85	11	66	24	14	16	44	1.84
849947--849976	14	2.1	14	93	0	51	33	10	6	50	1.62
856165--856209	18	2.6	18	92	3	74	31	0	15	53	1.43
859628--859675	24	2.0	24	95	0	87	33	12	14	39	1.84
864403--864440	17	2.2	17	95	0	67	15	23	42	18	1.89
875827--875872	24	1.9	24	95	0	83	32	13	13	41	1.82
882273--882684	81	5.1	81	89	1	592	31	22	11	35	1.89
901845--901887	13	3.2	13	78	12	50	39	13	2	44	1.57
902570--902620	23	2.2	24	92	3	86	56	21	5	15	1.60
902918--902960	20	2.1	21	86	4	61	32	0	30	37	1.58
903971--904014	23	1.9	23	95	0	79	43	0	6	50	1.29
904571--904604	17	2.0	17	88	0	50	29	29	41	0	1.57
904958--905035	26	3.2	25	63	29	60	52	2	11	33	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
904940--905055	47	2.5	47	95	0	205	58	2	7	31	1.40
907499--907554	12	4.7	12	90	0	85	12	7	35	44	1.70
907522--907599	30	2.6	30	79	4	86	11	3	39	44	1.59
907581--907638	25	2.4	23	88	5	80	15	5	41	37	1.70
907643--907696	13	4.2	13	82	0	63	9	1	35	53	1.44
907534--907683	6	24.7	6	69	7	61	10	4	40	45	1.56
908439--908476	16	2.6	15	84	15	53	52	0	0	47	1.00
908421--908503	15	5.4	15	72	22	57	50	2	0	46	1.14
908446--908520	15	5.1	15	81	15	79	52	2	0	45	1.15
908447--908558	15	7.1	15	72	16	68	51	3	0	43	1.25
908447--908569	31	4.1	31	74	20	102	51	3	1	43	1.27
908692--908735	23	1.9	23	90	0	70	47	4	6	40	1.50
908838--908876	2	20.0	2	89	5	62	48	0	0	51	1.00
908966--909057	7	13.1	7	71	4	69	22	2	29	45	1.64
908966--909057	14	6.6	14	79	7	89	22	2	29	45	1.64
909152--909225	37	2.1	36	87	5	105	39	12	9	39	1.75
909350--909390	21	2.0	21	85	0	55	26	0	31	41	1.56
909507--909585	28	2.9	26	80	14	79	40	6	7	45	1.58
909569--909623	2	28.0	2	75	17	53	45	1	1	50	1.22
909522--909618	13	7.2	13	73	14	72	43	4	5	47	1.44
909522--909618	28	3.4	28	77	12	83	43	4	5	47	1.44
909569--909623	17	3.4	17	76	18	55	45	1	1	50	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
909539--909619	28	2.7	31	83	9	89	43	3	3	49	1.38
909582--909623	21	2.0	21	86	9	59	47	2	0	50	1.14
910930--910968	18	2.2	18	90	0	60	17	51	17	12	1.76
912659--913011	175	2.0	175	100	0	706	37	15	18	28	1.91
913578--913677	24	4.2	24	73	5	85	22	14	16	48	1.81
913844--913872	2	14.5	2	100	0	58	48	0	0	51	1.00
915635--915695	18	3.4	18	93	0	95	19	49	19	11	1.78
915654--915721	31	2.1	33	81	10	79	20	41	20	17	1.91
918170--918276	24	4.5	24	73	0	88	22	12	16	48	1.79
919112--919145	15	2.2	15	89	5	50	17	23	23	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12