genome.fa.s260.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000260.1 Hibiscus syriacus cultivar Beakdansim tig00000477_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5583615

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  2  of  26  ( 3102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441622--441735	50	2.2	52	80	14	130	74	0	18	6	1.07
441651--441701	21	2.5	21	78	15	61	72	1	19	5	1.15
441620--441717	17	5.8	17	78	14	82	76	1	17	5	1.02
441626--441734	51	2.1	52	82	12	129	74	0	18	6	1.08
441610--441718	17	6.5	17	75	13	77	77	1	16	4	1.03
445859--445984	47	2.8	45	88	5	182	37	8	23	30	1.85
450750--450923	79	2.2	79	98	0	339	37	17	19	25	1.94
453828--454010	43	4.3	43	83	4	228	42	15	20	20	1.89
453840--454000	83	1.9	84	87	1	234	39	16	21	22	1.92
455517--455555	21	1.9	20	84	5	51	51	15	5	28	1.64
455754--455836	29	2.8	29	92	1	139	42	12	14	31	1.82
459197--459226	15	2.0	15	93	0	51	20	0	23	56	1.42
460509--460584	29	2.6	29	93	0	134	42	14	13	30	1.84
474796--474830	18	1.9	18	88	0	52	62	5	0	31	1.18
475912--476009	26	3.8	26	83	2	119	16	17	43	22	1.87
476206--476247	18	2.4	18	88	11	61	66	0	0	33	0.92
477569--477720	42	3.7	41	78	8	157	28	13	19	38	1.89
477595--477708	39	2.8	39	80	11	131	32	14	16	36	1.89
477562--477735	81	2.1	83	84	4	219	28	17	19	35	1.94
477754--477838	44	2.0	42	83	4	107	28	21	18	31	1.97
481420--481897	121	3.9	118	76	8	318	36	16	16	31	1.90
481394--481939	41	13.4	40	74	7	291	36	16	15	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481589--481905	81	3.9	80	74	8	255	36	15	16	31	1.90
482452--482493	15	2.9	15	85	3	50	19	19	14	47	1.82
484424--484502	3	26.0	3	79	7	61	37	1	0	60	1.05
484425--484501	22	3.5	22	81	10	86	37	1	0	61	1.05
484435--484505	37	1.9	37	85	0	97	40	1	0	57	1.07
484628--484694	34	2.0	34	100	0	134	19	35	17	26	1.94
485776--485820	2	23.0	2	95	4	83	51	0	0	48	1.00
492815--492886	24	3.0	24	97	0	135	34	29	15	20	1.93
493933--494036	54	1.9	55	88	2	156	36	13	20	29	1.91
495101--495964	47	18.7	47	84	6	1018	28	21	19	30	1.98
496265--496308	18	2.4	18	82	17	56	27	0	2	70	0.99
496294--496346	25	2.2	25	86	3	72	35	1	1	60	1.19
496783--496815	11	3.0	11	100	0	66	54	18	27	0	1.44
497286--497328	14	3.3	14	75	18	56	25	4	4	65	1.32
497284--497341	25	2.3	25	100	0	116	29	3	5	62	1.33
497655--497703	24	2.0	24	84	0	62	44	0	2	53	1.12
500564--500619	29	1.9	29	89	7	87	19	12	1	66	1.33
500618--500656	4	9.2	4	83	10	51	20	0	5	74	1.01
501407--501438	16	2.0	16	100	0	64	43	18	6	31	1.75
503430--503472	14	3.2	13	80	12	52	13	20	13	51	1.76
506104--506194	7	12.4	7	75	13	85	78	0	18	3	0.89
506112--506153	9	4.9	9	77	11	52	76	0	19	4	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506105--506194	6	14.5	6	75	15	60	77	0	18	3	0.90
507621--507816	101	1.9	102	87	3	288	36	17	22	22	1.95
507621--507816	51	3.9	51	87	4	263	36	17	22	22	1.95
508277--508388	54	2.1	54	87	0	161	36	15	21	26	1.93
509497--509830	73	4.6	73	96	0	587	31	15	14	38	1.87
509842--510131	39	7.4	39	84	3	341	42	11	23	23	1.86
509842--510786	117	8.3	117	84	6	1122	42	11	23	22	1.86
510098--510157	26	2.3	26	94	0	102	43	10	28	18	1.82
510019--510332	104	2.9	104	83	7	315	44	11	22	21	1.83
510124--510783	39	17.3	38	82	7	641	42	12	23	21	1.86
510319--510455	64	2.1	63	92	4	229	43	10	21	24	1.85
510368--510416	25	2.0	25	96	4	91	48	8	18	24	1.75
510285--510494	103	2.1	102	90	1	332	43	10	21	23	1.84
510664--510728	20	3.3	20	62	12	53	44	10	24	20	1.83
511862--511927	29	2.2	30	80	15	75	18	12	1	68	1.28
512932--513023	27	3.5	26	89	4	123	30	20	21	27	1.98
513106--513169	32	2.0	31	93	3	110	26	21	21	29	1.99
514382--514427	21	2.3	20	85	7	58	28	26	34	10	1.90
519772--519817	24	1.9	24	95	0	83	32	4	10	52	1.56
519962--520007	23	2.0	23	83	8	58	50	2	2	45	1.26
521055--521098	22	2.0	22	86	0	61	56	4	0	38	1.20
521729--521800	35	2.1	35	94	0	126	47	9	4	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
521719--521803	35	2.8	29	76	20	91	49	8	4	37	1.54
528985--529043	23	2.8	20	85	10	66	23	30	25	20	1.98
531758--531798	21	2.0	21	90	0	64	17	39	29	14	1.89
535687--535732	17	2.6	17	82	6	56	54	0	0	45	0.99
550686--550839	85	1.9	82	84	5	211	44	3	4	47	1.42
550686--550849	82	2.0	82	82	7	197	43	3	4	47	1.42
553042--553122	35	2.3	35	93	0	135	49	16	6	28	1.69
553042--553136	35	2.7	34	88	1	127	50	14	6	28	1.67
561361--561400	19	2.0	20	90	4	64	20	15	0	65	1.28
561357--561403	19	2.6	18	83	12	60	19	14	0	65	1.26
561630--561690	19	3.2	18	78	15	59	81	3	13	1	0.88
561631--561689	5	11.8	5	80	7	57	81	3	13	1	0.90
568805--568863	17	3.5	17	83	0	64	28	16	15	38	1.89
576243--576273	14	2.2	14	94	0	53	61	9	9	19	1.54
578042--578129	23	3.8	23	77	5	70	25	12	21	40	1.88
578061--578116	24	2.4	24	84	3	69	25	10	19	44	1.83
578052--578143	23	4.0	23	77	2	94	21	11	23	42	1.86
579601--579640	19	2.0	20	90	4	64	20	15	0	65	1.28
579924--579968	18	2.5	18	100	0	90	68	0	22	8	1.16
579906--579981	18	4.2	18	83	9	68	73	1	19	5	1.09
584856--584895	19	2.0	20	90	4	64	20	15	0	65	1.28
589630--589680	17	3.1	17	75	16	54	50	7	3	37	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591198--591473	132	2.1	132	93	0	462	30	18	19	30	1.96
591423--591525	50	2.1	50	88	0	152	28	21	15	34	1.94
591691--591777	44	2.0	44	83	0	111	26	20	21	31	1.98
591481--591971	130	3.7	131	87	2	673	29	19	20	31	1.97
592474--592603	68	1.9	70	90	7	212	33	15	21	30	1.94
592542--592776	39	6.0	39	89	1	337	34	18	20	26	1.95
592438--592774	117	3.0	117	85	6	439	34	16	20	27	1.95
594276--594322	24	1.9	25	86	4	69	4	19	0	76	0.95
594288--594329	19	2.3	18	84	8	50	2	19	0	78	0.86
594248--594329	33	2.4	34	75	16	82	4	15	1	78	0.99
599463--599541	10	7.5	10	77	14	63	16	8	0	74	1.05
599426--599487	24	2.7	22	78	11	70	16	3	4	75	1.10
599463--599546	21	4.0	21	73	17	75	15	9	0	75	1.05
604424--605143	71	9.5	75	77	13	438	30	24	21	23	1.99
604419--605095	152	4.5	151	76	16	564	30	24	20	23	1.98
604431--605144	73	9.4	75	76	15	464	30	24	21	23	1.99
605172--605233	21	3.2	20	65	25	53	24	19	12	43	1.86
605167--605289	36	3.4	36	89	1	192	25	20	13	41	1.88
605344--605452	43	2.9	36	76	18	121	47	17	8	26	1.75
605355--605442	43	2.0	44	93	2	151	51	15	7	25	1.71
607516--607668	10	15.4	10	68	22	60	17	8	0	73	1.12
607479--607616	24	6.0	22	67	20	70	16	7	2	73	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
607561--607607	15	3.2	15	93	3	78	21	4	0	74	0.99
607558--607683	15	8.2	16	70	22	53	20	7	0	71	1.14
607554--607692	19	7.6	19	67	26	63	19	7	0	71	1.14
618171--618222	21	2.5	21	81	3	61	38	19	25	17	1.93
618211--618304	20	4.7	20	77	7	91	35	24	17	23	1.95
618853--618897	19	2.4	19	92	0	72	48	26	15	8	1.74
618893--619076	19	10.1	19	76	13	172	12	23	20	43	1.86
618964--619051	33	2.6	33	92	1	140	11	26	23	38	1.89
621165--621371	42	4.9	42	80	1	218	22	37	17	22	1.94
621221--621371	21	7.2	21	62	10	58	23	37	18	21	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26