genome.fa.s260.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000260.1 Hibiscus syriacus cultivar Beakdansim tig00000477_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5583615

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  3  of  26  ( 3102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
621169--621341	84	2.1	84	100	0	346	21	38	17	23	1.93
621169--621371	84	2.4	84	92	1	291	22	36	17	22	1.94
622729--622764	14	2.6	14	95	0	63	30	0	25	44	1.54
622889--622945	14	3.7	14	77	20	60	45	22	22	8	1.80
622871--622960	33	2.7	33	92	0	144	44	21	21	13	1.85
622871--622931	19	3.5	19	78	21	78	45	21	21	11	1.82
622956--623106	19	8.7	19	64	21	80	15	22	20	41	1.89
622960--623086	33	3.9	32	87	8	193	14	22	19	42	1.88
622953--623085	66	2.0	66	97	0	248	16	22	19	41	1.90
625380--625404	12	2.1	12	100	0	50	0	28	0	72	0.86
625569--625622	24	2.2	24	86	0	72	40	18	16	24	1.90
626410--626461	21	2.5	21	81	3	61	38	15	23	23	1.92
626481--626530	20	2.5	20	71	12	57	38	20	18	24	1.93
626744--626811	20	3.4	20	68	8	66	41	23	19	16	1.90
626842--626915	19	4.5	16	83	16	66	13	20	18	47	1.82
626838--626905	19	3.8	19	87	12	101	13	22	17	47	1.82
627042--627078	14	2.6	14	86	0	56	48	21	0	29	1.50
628496--628578	42	2.0	42	87	0	121	20	14	44	20	1.86
628947--629014	20	3.5	19	82	6	73	38	22	23	16	1.93
629003--629093	14	5.9	14	74	20	83	48	23	17	10	1.79
628987--629098	33	3.4	33	97	1	208	47	22	18	11	1.81
628987--629109	65	1.9	66	91	5	205	47	23	17	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
629121--629184	14	4.4	14	80	16	76	10	15	23	50	1.76
629110--629200	32	2.8	33	93	3	157	12	17	21	48	1.80
629185--629239	20	2.8	19	83	8	65	16	23	23	36	1.94
629721--629765	18	2.5	18	88	0	72	13	15	44	26	1.83
631103--631147	20	2.2	20	88	0	72	37	24	20	17	1.93
631602--631715	41	2.8	41	82	4	142	23	17	23	35	1.95
631663--631716	20	2.7	20	97	0	99	25	18	24	31	1.97
631602--631719	61	1.9	62	86	5	168	22	16	22	37	1.94
631787--631827	21	2.0	21	85	0	55	34	29	17	19	1.94
634995--635063	32	2.2	32	97	0	129	37	5	8	47	1.58
637342--637375	15	2.2	15	94	5	59	67	0	5	26	1.13
637926--637955	12	2.5	12	100	0	60	70	0	23	6	1.11
638054--638236	84	2.2	82	88	3	260	54	13	2	30	1.51
640253--640346	6	15.3	6	74	14	77	77	3	4	14	1.04
644638--644686	24	2.0	24	96	0	89	30	16	10	42	1.81
645829--645862	15	2.2	16	94	5	61	67	0	5	26	1.13
651481--651510	10	3.1	10	95	4	53	20	0	0	80	0.72
654333--654402	33	2.1	33	89	0	104	32	11	11	44	1.76
655007--655032	12	2.2	12	100	0	52	30	7	0	61	1.24
654979--655048	35	2.1	34	82	10	83	34	7	0	58	1.25
663595--663714	54	2.2	53	83	1	141	26	18	17	37	1.93
670427--670478	19	2.6	21	87	6	72	46	5	11	36	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
672687--672729	20	2.2	19	88	12	61	48	4	9	37	1.56
674272--674627	177	2.0	178	99	0	705	35	15	18	30	1.92
675974--675998	8	3.1	8	100	0	50	0	24	0	76	0.80
678307--678392	43	2.0	43	97	0	163	34	13	17	33	1.89
678583--678696	54	2.1	54	85	0	147	28	15	18	37	1.92
678655--678736	41	2.0	41	100	0	164	29	14	17	39	1.89
679681--679763	43	1.9	44	85	2	114	30	10	14	44	1.79
683817--683860	21	2.1	21	82	0	52	27	0	25	47	1.52
691209--691262	28	1.9	28	92	7	92	37	0	5	57	1.22
694369--694424	26	2.1	27	86	6	78	25	14	14	46	1.82
698764--698814	26	1.9	27	92	4	86	23	13	15	47	1.82
698764--698826	27	2.3	27	86	5	83	22	12	19	46	1.83
699758--699797	17	2.4	17	91	8	64	35	12	2	50	1.54
701715--701739	10	2.5	10	100	0	50	60	16	12	12	1.60
704799--704825	14	1.9	14	100	0	54	55	0	0	44	0.99
705484--705615	26	5.1	26	96	0	210	34	29	15	21	1.94
710312--710345	18	1.9	17	88	5	50	41	2	5	50	1.42
715935--716081	44	3.3	44	93	0	240	21	22	23	32	1.98
716087--716189	39	2.6	38	80	6	91	21	24	20	33	1.97
718007--718055	21	2.3	21	96	0	89	28	38	14	18	1.90
722994--723165	44	3.9	44	89	0	254	24	22	19	33	1.97
723181--723293	39	2.9	39	82	0	136	15	25	23	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724172--724415	134	1.8	134	83	2	321	31	18	18	31	1.95
724172--724450	134	2.1	133	81	4	312	31	18	18	31	1.95
724479--724910	89	4.8	89	85	3	528	32	17	18	31	1.94
724479--724910	178	2.4	178	86	3	589	32	17	18	31	1.94
726947--727014	29	2.4	28	78	11	75	47	1	2	48	1.26
728577--728624	20	2.4	20	92	0	78	10	16	22	50	1.76
728592--728635	20	2.2	20	83	0	52	13	15	20	50	1.78
729133--729368	20	11.7	21	73	16	92	19	19	18	43	1.88
729140--729188	21	2.4	20	86	10	64	20	20	18	40	1.91
729134--729278	40	3.6	41	86	4	163	16	20	19	44	1.87
729160--729291	40	3.3	40	90	1	192	14	19	21	44	1.86
729160--729346	40	4.7	40	80	11	154	18	19	18	43	1.88
729181--729311	60	2.2	60	80	2	138	16	18	20	45	1.86
729282--729368	40	2.2	40	87	0	129	22	17	16	43	1.87
729408--729570	79	2.1	79	94	0	281	31	9	15	42	1.79
733065--733181	44	2.6	45	86	2	164	26	11	15	47	1.79
733584--733620	16	2.4	16	95	4	67	13	10	0	75	1.04
733579--733614	15	2.5	14	86	8	54	13	11	2	72	1.23
734442--734500	3	19.7	3	100	0	118	33	0	0	66	0.92
743244--743374	20	6.4	21	73	9	101	40	18	22	19	1.91
743261--743336	21	3.7	21	80	3	100	40	18	25	15	1.90
743244--743336	41	2.3	41	100	0	186	39	18	24	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
743263--743397	41	3.3	41	83	6	141	38	20	21	20	1.94
743367--743419	20	2.7	20	90	0	70	28	26	18	26	1.98
743607--743650	22	2.0	22	95	0	79	20	45	15	18	1.85
743920--743962	20	2.2	20	95	0	77	9	18	18	53	1.70
745282--745326	18	2.5	18	88	0	72	26	44	15	13	1.83
745808--745874	20	3.4	20	81	2	73	38	23	22	14	1.92
745863--745920	14	3.9	14	75	16	62	48	22	17	12	1.80
745847--745937	32	2.8	33	91	3	157	47	20	18	13	1.82
745954--746011	14	3.9	14	79	16	71	8	17	25	48	1.75
745949--746027	32	2.4	33	95	2	142	10	18	24	46	1.80
745968--746085	20	6.4	19	77	11	95	13	20	24	41	1.88
747915--747950	14	2.6	14	90	0	54	30	0	22	47	1.52
749074--749127	24	2.2	24	90	0	81	24	16	20	38	1.92
749302--749326	12	2.1	12	100	0	50	72	0	28	0	0.86
751615--751745	19	7.7	19	66	23	94	42	19	22	14	1.88
751615--751741	33	3.8	33	88	4	202	42	19	22	14	1.88
751616--751748	66	2.0	66	97	0	248	41	19	22	16	1.90
751925--751961	14	2.6	14	91	0	65	45	24	0	29	1.53
755442--755562	33	3.5	33	78	6	116	46	21	20	11	1.82
755497--755586	19	4.7	19	88	2	126	47	20	18	13	1.82
755497--755586	39	2.3	38	92	1	144	47	20	18	13	1.82
755582--755628	19	2.5	19	89	0	76	6	14	23	55	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
756144--756197	20	2.7	20	91	0	81	29	20	25	24	1.99
756205--756258	20	2.7	20	97	0	99	25	18	24	31	1.97
756146--756258	40	2.8	40	78	0	118	25	18	24	30	1.98
763547--763660	24	4.8	24	89	4	167	25	14	19	40	1.90
763562--763624	12	5.2	12	68	21	51	25	14	22	38	1.92
763547--763678	48	2.8	48	85	2	167	25	12	20	40	1.88
763550--763678	24	5.4	24	85	3	134	26	12	20	40	1.88
768016--768130	24	4.8	24	84	4	133	26	14	18	40	1.89
768016--768147	48	2.8	48	82	2	140	27	12	18	40	1.87
768016--768147	24	5.5	24	83	7	124	27	12	18	40	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26