genome.fa.s260.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000260.1 Hibiscus syriacus cultivar Beakdansim tig00000477_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5583615

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  26  of  26  ( 3102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5360610--5360658	25	2.0	25	88	8	73	79	0	4	16	0.88
5364187--5364978	85	9.3	85	85	1	1016	26	17	19	36	1.94
5364207--5365008	339	2.4	340	85	2	1072	26	17	19	36	1.94
5366327--5366528	99	2.0	99	91	0	323	31	19	16	32	1.94
5367019--5367095	36	2.1	37	88	4	113	61	9	10	19	1.55
5369624--5369698	24	3.2	24	75	14	66	80	1	6	12	0.97
5369624--5369696	23	3.2	22	79	11	76	79	1	6	12	0.99
5381499--5381532	17	2.1	16	88	5	50	47	2	0	50	1.16
5383299--5383368	4	17.5	4	87	0	68	38	25	11	24	1.89
5383304--5383368	12	5.4	12	88	0	76	36	26	12	24	1.91
5383300--5383368	16	4.3	16	100	0	138	37	26	11	24	1.89
5386556--5386612	17	3.2	17	73	22	55	21	28	15	35	1.94
5387983--5388013	15	2.1	15	93	0	53	29	0	0	70	0.87
5390399--5390447	20	2.4	20	96	3	89	28	18	12	40	1.86
5398210--5398245	17	2.1	17	89	0	54	8	8	19	63	1.47
5418822--5418872	24	2.2	23	82	10	59	37	39	0	23	1.55
5421541--5421614	35	2.1	35	100	0	148	22	14	18	43	1.87
5434989--5435026	20	1.9	20	94	0	67	39	2	10	47	1.52
5435738--5435775	2	19.0	2	100	0	76	50	0	0	50	1.00
5437860--5437908	24	2.0	24	88	0	71	12	36	20	30	1.89
5438419--5438579	60	2.7	60	85	0	216	39	14	14	31	1.87
5439228--5439262	18	1.9	18	94	0	61	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5439481--5439543	29	2.1	29	82	8	74	50	7	11	30	1.66
5440715--5440769	5	10.8	5	84	3	74	74	1	0	23	0.91
5441806--5441884	24	3.5	24	69	13	85	32	18	15	32	1.92
5441830--5441904	20	3.5	20	72	13	69	29	20	18	32	1.96
5441804--5441904	44	2.3	44	96	0	184	30	19	17	31	1.95
5443884--5443932	21	2.3	21	96	0	89	48	4	14	32	1.62
5443878--5443932	21	2.4	23	82	14	78	50	3	12	32	1.58
5447573--5447634	20	3.0	20	73	17	63	29	16	12	41	1.85
5447573--5447673	42	2.4	42	80	6	107	28	18	13	38	1.90
5448954--5449005	26	2.1	24	82	10	61	21	28	28	21	1.98
5451607--5451720	21	5.5	21	88	6	135	42	21	21	15	1.89
5454298--5454337	17	2.4	17	87	8	55	75	0	25	0	0.81
5454298--5454338	11	3.6	11	83	6	55	75	0	24	0	0.80
5459167--5459209	9	4.8	9	80	11	52	83	0	4	11	0.78
5459167--5459210	18	2.4	19	84	3	63	84	0	4	11	0.77
5460213--5460326	53	2.2	52	92	3	185	29	14	29	25	1.95
5460240--5460402	86	1.9	86	86	7	233	30	14	32	22	1.94
5460327--5460496	55	3.1	55	88	3	256	27	15	28	28	1.96
5463963--5464002	2	20.0	2	100	0	80	50	0	0	50	1.00
5469295--5469323	6	4.8	6	100	0	58	0	17	13	68	1.20
5471839--5471900	22	2.8	22	85	4	81	27	22	20	29	1.99
5479179--5479512	171	2.0	171	100	0	668	25	17	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5491025--5491067	19	2.1	21	83	8	54	34	20	11	32	1.89
5494688--5494767	42	1.9	42	84	0	106	51	28	6	13	1.65
5496104--5496160	30	1.9	30	92	7	98	42	21	3	33	1.70
5496717--5496774	2	30.0	2	93	6	102	51	0	0	48	1.00
5501492--5501523	2	16.0	2	100	0	64	50	0	0	50	1.00
5503449--5503481	2	16.5	2	93	0	57	51	0	0	48	1.00
5504260--5504295	15	2.5	14	86	8	54	66	0	11	22	1.22
5504257--5504297	15	2.6	16	77	14	50	65	0	9	24	1.22
5504983--5505016	17	2.0	17	88	0	50	8	2	14	73	1.19
5506930--5507052	65	1.9	64	85	5	167	25	17	20	36	1.94
5508026--5508426	200	2.0	200	98	0	766	33	23	1	41	1.65
5510406--5510507	53	1.9	53	95	0	186	40	14	13	31	1.85
5515168--5515271	53	2.0	53	96	0	190	39	16	13	30	1.87
5516644--5516712	20	3.5	20	91	0	111	31	26	15	26	1.96
5516763--5516885	65	1.9	64	85	5	167	26	18	19	35	1.95
5517372--5517424	26	2.0	26	96	0	97	24	22	13	39	1.90
5517891--5518025	41	3.4	40	76	14	127	46	7	1	44	1.40
5517894--5518145	38	6.9	36	73	16	164	44	8	2	44	1.47
5517903--5518139	70	3.2	71	77	14	182	45	8	2	43	1.47
5518240--5518280	20	2.0	20	90	0	64	56	0	12	31	1.36
5521442--5521483	3	13.7	3	87	5	57	66	2	0	30	1.04
5521924--5523337	124	11.5	124	88	2	1792	24	16	25	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5522879--5523213	66	5.4	65	65	18	221	23	15	25	35	1.94
5524415--5524600	95	2.0	95	89	2	284	27	18	19	33	1.96
5526038--5526082	18	2.4	19	81	3	56	66	4	13	15	1.39
5527019--5527060	13	3.3	13	76	6	50	66	2	0	30	1.04
5528707--5528731	11	2.3	11	100	0	50	32	8	24	36	1.84
5528978--5529693	227	3.1	228	97	0	1328	44	7	8	39	1.63
5529742--5529788	20	2.4	19	89	10	76	55	10	17	17	1.69
5529922--5529968	20	2.4	19	79	10	58	53	8	17	21	1.70
5532190--5532233	21	2.1	21	91	0	70	40	11	31	15	1.83
5532268--5532333	33	2.0	33	90	0	105	28	0	48	22	1.51
5534119--5534167	19	2.6	19	93	0	80	30	2	10	57	1.43
5534286--5535458	199	5.9	200	97	0	2167	36	14	17	31	1.90
5534286--5535458	399	2.9	399	97	0	2190	36	14	17	31	1.90
5537032--5537068	18	2.1	18	89	0	56	32	5	10	51	1.60
5537024--5537070	24	2.0	24	86	0	67	34	4	14	46	1.64
5537327--5537413	39	2.2	39	91	0	147	48	19	13	18	1.81
5537830--5537902	23	3.2	23	88	0	101	34	4	21	39	1.73
5538260--5538332	23	3.2	23	84	7	94	35	2	21	39	1.68
5537628--5538680	430	2.5	429	97	1	2004	41	7	12	38	1.71
5538478--5538543	30	2.2	30	82	12	75	53	4	0	42	1.21
5539761--5539788	3	9.3	3	100	0	56	0	0	32	67	0.91
5541676--5541707	2	16.5	2	93	6	57	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5543045--5543117	3	24.3	3	88	0	110	34	0	5	60	1.20
5543344--5543377	16	2.1	17	88	5	52	29	2	0	67	1.05
5546197--5546333	32	4.3	31	87	6	179	27	18	19	34	1.95
5546197--5546333	64	2.2	63	88	6	197	27	18	19	34	1.95
5546212--5546347	32	4.3	32	86	6	136	29	16	20	33	1.95
5547138--5547203	22	3.0	22	86	0	105	34	27	15	22	1.94
5554461--5554548	45	1.9	46	93	2	151	26	25	19	29	1.98
5562661--5562721	31	2.0	31	90	0	95	39	4	21	34	1.75
5563188--5563259	23	3.1	23	85	0	90	43	9	19	27	1.82
5565435--5565518	43	2.0	43	90	4	134	23	17	32	26	1.97
5565565--5565606	20	2.1	20	100	0	84	38	19	16	26	1.92
5565556--5565606	20	2.4	22	77	16	61	33	15	23	27	1.95
5568807--5568839	15	2.3	15	90	10	52	72	0	0	27	0.85
5581289--5581371	36	2.3	36	85	0	112	31	14	38	15	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26

The End!