genome.fa.s426.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000426.1 Hibiscus syriacus cultivar Beakdansim tig00000778_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3165331

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  2  of  15  ( 1749 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238696--238776	14	4.8	18	69	25	70	11	20	19	48	1.79
238696--238818	33	3.5	33	86	10	156	11	23	18	46	1.81
238754--238818	21	3.1	21	82	4	96	10	26	15	47	1.78
240509--240881	93	4.1	93	97	1	709	22	12	19	45	1.83
240509--240881	185	2.0	183	97	2	703	22	12	19	45	1.83
240926--241002	19	4.3	19	76	17	83	45	29	15	9	1.77
240998--241150	19	8.6	19	77	13	137	11	20	22	45	1.83
241001--241095	33	2.9	33	93	0	163	12	21	20	46	1.83
243092--243127	14	2.6	14	95	0	63	33	0	22	44	1.53
243234--243349	19	6.7	18	79	17	122	43	18	24	13	1.86
243234--243349	51	2.2	53	96	3	218	43	18	24	13	1.86
243339--243541	19	11.7	19	72	20	185	14	21	17	46	1.84
243339--243513	52	3.3	52	95	0	305	14	22	16	46	1.84
243345--243555	33	6.2	33	75	16	207	13	21	18	46	1.83
246025--246071	24	2.0	24	87	8	69	38	21	14	25	1.92
246754--246963	20	10.5	20	84	5	228	20	18	25	36	1.95
246956--247011	21	2.7	21	74	0	67	28	14	23	33	1.94
261251--261306	26	2.2	26	96	0	103	28	26	10	33	1.90
262951--263039	30	3.0	30	93	0	142	32	19	13	34	1.90
263120--263207	3	29.3	3	100	0	176	0	32	0	67	0.91
263278--263309	7	4.9	7	85	14	50	0	31	12	56	1.37
264052--264523	167	2.8	164	86	3	640	30	22	12	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266379--266476	37	2.9	32	76	18	99	50	1	2	46	1.19
266713--266754	21	2.0	20	86	13	59	2	28	2	66	1.16
273559--273615	22	2.6	22	94	5	98	21	3	31	43	1.69
280806--280843	14	2.7	14	88	8	51	21	10	31	36	1.87
298149--298386	115	2.1	116	83	6	295	26	9	5	58	1.51
298987--299028	20	2.1	20	86	0	57	28	11	0	59	1.33
311423--311456	16	2.1	17	89	10	54	44	0	0	55	0.99
311868--311896	6	5.0	6	91	8	51	48	0	0	51	1.00
316232--316371	36	3.9	36	94	1	246	20	40	7	31	1.81
316232--316366	71	1.9	72	96	1	254	20	41	6	31	1.78
318080--318203	65	1.9	64	90	1	194	25	22	26	25	2.00
318552--318585	2	17.0	2	100	0	68	50	0	0	50	1.00
323402--323433	13	2.4	14	94	5	57	43	3	0	53	1.16
323909--323964	19	2.9	19	80	12	62	64	0	0	35	0.94
323908--323962	18	2.9	19	80	15	69	63	0	0	36	0.95
324262--324328	32	2.1	32	83	5	82	35	25	13	25	1.92
324511--324540	15	2.0	15	93	0	51	36	26	16	20	1.93
327643--327696	18	3.0	18	78	15	58	46	16	7	29	1.74
327640--327702	14	4.2	14	73	15	54	47	14	6	31	1.69
329132--329194	21	3.0	21	78	0	72	23	7	28	39	1.83
329135--329201	21	3.3	19	73	15	62	22	8	29	38	1.85
331120--331169	21	2.3	23	86	6	68	46	4	8	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336388--336889	55	9.1	55	80	10	257	32	24	15	28	1.95
336421--336890	110	4.3	109	84	8	582	31	24	15	28	1.95
336454--336905	55	8.3	52	81	8	423	32	24	14	28	1.95
338260--338329	17	4.1	18	77	15	60	7	17	1	74	1.11
338266--338343	35	2.2	36	82	8	90	7	17	1	73	1.14
338259--338352	17	5.6	17	69	27	51	7	19	1	72	1.14
338384--338419	12	3.1	12	88	8	56	2	16	0	80	0.83
347759--347847	45	1.9	47	93	4	155	37	23	11	28	1.89
354522--354561	15	2.7	15	88	0	53	27	10	30	32	1.89
354745--354925	60	3.0	60	99	0	353	41	20	18	19	1.90
357771--357805	18	1.9	18	88	0	52	48	0	0	51	1.00
360938--360964	4	6.8	4	100	0	54	77	0	0	22	0.76
369522--369580	28	2.1	28	90	0	91	18	11	16	52	1.74
378447--378559	55	2.1	55	94	0	199	29	25	4	40	1.75
380445--380484	20	2.0	21	85	14	57	42	5	7	45	1.54
380715--380753	19	2.1	19	95	0	69	20	38	15	25	1.92
380701--380861	65	2.5	66	84	5	204	31	24	16	27	1.96
380701--380881	64	2.8	64	82	2	211	29	25	17	27	1.97
382409--382505	47	2.1	47	98	0	185	22	29	12	35	1.91
382569--382623	29	1.9	28	92	3	92	38	16	9	36	1.80
388170--388215	21	2.1	22	96	4	85	52	17	8	21	1.71
389614--389738	24	5.2	24	72	5	101	42	16	16	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389614--389729	47	2.5	47	80	9	137	40	15	17	26	1.89
393036--393060	12	2.1	12	100	0	50	28	16	8	48	1.74
393995--396085	215	9.7	216	88	2	2930	34	22	20	22	1.97
394081--396072	647	3.1	648	92	1	3209	33	23	20	22	1.97
402214--402272	19	3.1	19	76	9	66	49	0	0	50	1.00
402238--402279	15	2.8	15	78	10	50	47	0	0	52	1.00
402196--402281	17	5.2	17	68	19	56	50	0	0	50	1.00
409508--409550	12	3.8	12	84	6	54	4	13	48	32	1.63
409649--409755	20	5.2	20	80	10	92	15	22	21	40	1.91
409649--409755	40	2.6	39	77	12	108	15	22	21	40	1.91
412963--413004	20	2.1	20	86	0	57	52	11	7	28	1.64
415075--415099	3	8.3	3	100	0	50	36	32	0	32	1.58
416037--416065	2	14.5	2	100	0	58	48	0	0	51	1.00
418821--418907	38	2.4	37	90	5	140	50	0	0	49	1.00
418829--418907	32	2.4	33	83	12	92	50	0	0	49	1.00
418819--418905	13	6.2	15	70	18	55	50	0	0	49	1.00
418819--418907	17	5.2	17	67	20	60	50	0	0	49	1.00
426125--426167	12	3.8	12	84	6	54	4	13	48	32	1.63
426266--426372	20	5.2	20	80	10	92	15	22	21	40	1.91
426266--426372	40	2.6	39	77	12	108	15	22	21	40	1.91
429574--429615	20	2.1	20	86	0	57	52	11	7	28	1.64
431687--431711	3	8.3	3	100	0	50	36	32	0	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432650--432674	2	12.5	2	100	0	50	48	0	0	52	1.00
437315--437387	37	1.9	39	88	5	114	45	12	13	28	1.80
451931--451997	31	2.2	31	86	5	91	19	44	19	16	1.87
451987--452020	15	2.1	16	89	10	52	11	35	29	23	1.90
452937--452972	18	2.0	18	88	0	54	52	0	16	30	1.44
454137--454206	12	5.8	12	78	6	70	15	15	18	50	1.79
454100--454208	48	2.3	48	85	6	141	18	16	15	49	1.80
454100--454208	24	4.5	24	80	6	123	18	16	15	49	1.80
459329--459443	20	5.7	21	77	8	87	33	28	13	24	1.94
459415--459581	57	2.9	57	90	2	255	37	23	13	25	1.92
459922--459976	20	2.8	20	88	8	85	38	16	16	29	1.90
460023--460159	20	6.7	21	76	6	122	27	13	28	30	1.94
460061--460159	42	2.4	41	89	3	146	23	14	29	33	1.94
461864--462115	125	2.0	125	94	0	441	37	14	10	37	1.81
464775--464817	2	21.5	2	100	0	86	48	0	0	51	1.00
464886--464914	2	14.5	2	100	0	58	48	0	0	51	1.00
468167--468217	10	4.9	10	76	9	57	80	5	13	0	0.89
468167--468217	21	2.4	21	87	9	77	80	5	13	0	0.89
468167--468245	21	3.8	21	75	12	74	77	6	15	1	1.03
468167--468234	20	3.3	20	85	6	82	79	5	13	1	0.98
468842--468892	22	2.3	22	96	0	93	35	27	11	25	1.91
469751--469855	36	2.9	36	88	2	156	24	22	13	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469751--469860	37	3.0	37	87	2	159	26	22	12	38	1.90
469962--470053	36	2.6	36	84	10	109	19	19	19	41	1.91
469995--470025	15	2.1	15	100	0	62	19	19	19	41	1.90
470034--470190	68	2.4	68	86	5	214	31	21	9	36	1.86
470795--471967	105	11.3	104	90	3	1694	33	26	18	22	1.97
470795--471967	205	5.7	207	91	2	1735	33	26	18	22	1.97
470795--471967	305	3.8	311	92	3	1814	33	26	18	22	1.97
473152--473185	17	2.1	16	88	5	50	26	8	0	64	1.22
476091--476228	21	6.7	21	70	6	68	36	25	17	20	1.94
476196--476389	20	9.6	20	82	6	87	35	26	18	19	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15