genome.fa.s426.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000426.1 Hibiscus syriacus cultivar Beakdansim tig00000778_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3165331

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  15  of  15  ( 1749 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3107603--3107676	37	2.1	36	84	5	96	40	9	10	39	1.73
3107662--3107711	20	2.5	20	90	3	75	48	4	8	40	1.51
3107795--3107859	14	4.8	13	72	14	51	50	29	0	20	1.48
3107940--3108021	18	4.6	17	75	15	67	45	6	6	42	1.53
3107976--3108027	2	26.0	2	82	7	61	46	3	3	46	1.39
3107976--3108055	24	3.7	22	81	12	87	43	5	3	47	1.43
3108063--3108202	22	6.5	21	77	12	117	36	5	9	49	1.57
3108199--3108249	21	2.4	21	90	0	75	41	9	1	47	1.48
3109877--3109930	23	2.3	24	83	3	74	48	7	0	44	1.31
3110165--3110201	16	2.4	16	86	4	58	48	10	13	27	1.75
3114515--3114582	30	2.2	30	81	2	73	52	13	11	22	1.72
3114536--3114593	30	1.9	30	92	0	98	50	15	12	22	1.77
3115591--3115651	28	2.2	28	79	5	70	19	4	8	67	1.36
3115781--3115861	16	4.9	17	67	19	55	27	1	2	69	1.09
3115832--3115868	12	2.9	13	88	11	51	27	0	0	72	0.84
3127660--3127693	9	3.7	9	92	7	59	0	11	0	88	0.52
3127660--3127693	10	3.5	10	88	4	52	0	11	0	88	0.52
3127663--3127692	15	1.9	16	93	6	53	0	13	0	86	0.57
3127660--3127702	19	2.3	18	80	7	50	4	11	0	83	0.78
3128257--3129356	133	8.3	133	91	0	1684	29	20	19	30	1.97
3129337--3129627	33	8.8	33	80	6	309	38	18	20	23	1.94
3129337--3129627	67	4.4	67	79	7	315	38	18	20	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3129336--3129596	100	2.6	99	90	3	400	37	19	20	22	1.94
3130674--3130734	28	2.2	28	79	5	70	21	4	6	67	1.33
3130869--3130940	19	3.7	19	77	14	76	25	1	4	69	1.14
3131791--3131831	22	1.9	22	90	5	66	29	17	7	46	1.74
3133944--3134034	23	4.0	23	69	14	73	31	2	2	63	1.18
3134128--3134168	20	2.0	20	90	0	64	36	7	0	56	1.27
3134133--3134174	20	2.1	20	86	0	57	45	4	0	50	1.23
3136319--3136358	18	2.3	18	86	4	55	42	0	2	55	1.13
3136653--3136745	16	6.4	16	63	28	55	39	6	5	48	1.52
3136651--3136705	27	2.0	27	100	0	110	41	3	3	50	1.37
3136946--3137266	155	2.1	155	98	1	619	48	3	4	42	1.42
3140369--3140441	35	2.1	35	89	0	110	35	26	26	12	1.91
3140524--3140586	24	2.6	24	89	0	99	36	19	19	25	1.94
3141564--3141589	9	2.9	9	100	0	52	11	7	23	57	1.59
3143073--3143102	13	2.3	13	100	0	60	13	23	46	16	1.82
3144410--3144461	21	2.5	21	81	3	61	38	19	25	17	1.93
3144450--3144563	20	5.7	20	83	6	113	31	25	18	24	1.97
3144447--3144563	61	1.9	61	85	0	162	33	24	17	23	1.97
3145128--3145305	19	9.7	19	75	16	151	11	20	22	45	1.83
3145128--3145210	39	2.2	38	97	2	157	10	18	22	48	1.79
3145140--3145221	39	2.1	39	86	6	114	8	20	26	43	1.80
3145193--3145281	33	2.6	33	91	3	133	11	23	24	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3145248--3145306	20	2.9	21	82	5	66	15	20	18	45	1.85
3145843--3145896	24	2.2	24	90	0	81	38	20	16	24	1.92
3146953--3147003	20	2.5	20	93	0	84	37	27	21	13	1.91
3146955--3147016	20	3.1	20	86	4	81	41	24	20	12	1.87
3147034--3147087	14	3.5	14	77	22	63	11	20	20	48	1.80
3147016--3147086	33	2.2	33	84	0	88	19	19	21	39	1.93
3147029--3147106	33	2.4	33	91	0	120	12	23	21	42	1.87
3147194--3147230	14	2.6	14	86	0	56	48	21	0	29	1.50
3149097--3149152	20	2.8	20	79	12	71	37	21	23	17	1.94
3149097--3149163	19	3.5	19	76	11	73	38	22	22	16	1.92
3149136--3149193	14	3.4	18	71	24	54	46	22	18	12	1.82
3149152--3149209	14	3.9	14	79	16	71	48	25	17	8	1.75
3149136--3149214	32	2.4	33	95	2	142	46	24	18	10	1.80
3149221--3149316	19	5.6	17	72	21	69	11	18	22	46	1.81
3149243--3149300	14	3.9	14	79	16	71	8	15	25	50	1.73
3149226--3149316	32	2.8	33	91	3	157	10	17	23	48	1.79
3149301--3149355	20	2.8	19	83	8	65	16	23	23	36	1.94
3149843--3149887	18	2.5	18	88	0	72	13	15	44	26	1.83
3151207--3151249	20	2.2	20	95	0	77	53	18	18	9	1.70
3151526--3151569	22	2.0	22	95	0	79	18	15	45	20	1.85
3151757--3151851	20	4.7	20	78	2	91	24	17	23	34	1.96
3151840--3151932	20	4.5	21	78	4	100	17	24	18	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3151779--3151913	41	3.3	41	82	4	139	19	21	20	38	1.94
3151840--3151932	41	2.3	41	100	0	186	17	24	18	39	1.91
3163841--3163880	13	3.1	13	100	0	80	62	7	0	30	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15

The End!