genome.fa.s426.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000426.1 Hibiscus syriacus cultivar Beakdansim tig00000778_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3165331

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  9  of  15  ( 1749 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1828067--1828098	17	1.9	17	93	6	57	25	0	25	50	1.50
1830485--1830519	15	2.4	14	90	4	52	65	5	11	17	1.43
1830620--1830651	16	2.0	16	100	0	64	31	0	31	37	1.58
1831369--1831420	26	1.9	27	88	7	79	44	0	0	55	0.99
1842180--1842219	19	2.1	19	100	0	80	42	5	30	22	1.75
1846746--1846789	21	2.1	21	100	0	88	18	9	36	36	1.82
1854355--1854393	21	1.9	20	84	5	51	51	2	2	43	1.29
1857396--1857503	39	2.8	39	82	2	128	39	12	2	45	1.56
1857577--1857624	24	2.0	24	84	8	62	39	2	4	54	1.32
1866493--1866517	2	12.5	2	100	0	50	52	0	0	48	1.00
1870165--1870214	24	2.1	24	92	0	82	40	24	20	16	1.91
1872056--1872088	15	2.2	16	89	10	52	12	0	9	78	0.95
1875784--1875856	34	2.1	34	82	5	94	31	38	8	21	1.83
1877345--1877407	22	2.9	22	77	9	67	38	1	1	58	1.17
1880841--1880868	2	14.0	2	100	0	56	50	0	0	50	1.00
1880880--1880941	32	1.9	32	93	0	106	48	6	9	35	1.62
1880909--1881014	37	2.8	39	84	7	137	45	5	8	40	1.58
1880983--1881009	13	2.1	13	100	0	54	44	7	7	40	1.60
1883021--1883072	27	1.9	28	84	7	72	40	21	0	38	1.53
1883474--1883530	10	5.8	10	80	12	57	33	0	1	64	1.04
1883478--1883527	15	3.2	16	83	10	59	32	0	2	66	1.03
1883478--1883533	15	3.9	14	75	17	53	32	0	1	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1886791--1886851	13	4.3	13	73	18	59	19	40	21	18	1.91
1889308--1889423	24	4.8	24	88	6	164	25	16	19	38	1.92
1894097--1894123	13	2.1	13	100	0	54	22	25	14	37	1.93
1898478--1898522	13	3.5	13	84	6	65	22	46	15	15	1.83
1898524--1898595	36	2.0	35	81	10	83	55	0	0	44	0.99
1898576--1898614	19	2.1	18	90	4	60	56	0	0	43	0.99
1898571--1898618	23	2.1	23	88	0	69	54	0	0	45	0.99
1898637--1898682	12	3.9	12	94	2	76	30	50	10	8	1.68
1900477--1900527	21	2.3	22	80	6	59	11	21	17	49	1.79
1901595--1901649	15	3.1	17	75	22	51	45	0	1	52	1.11
1901599--1901645	21	2.1	24	88	11	73	40	0	2	57	1.11
1901625--1901657	15	2.3	15	89	5	50	51	0	3	45	1.16
1901926--1901951	2	13.0	2	100	0	52	50	0	0	50	1.00
1903648--1903698	21	2.4	21	93	0	93	15	52	17	13	1.74
1904740--1904778	19	2.1	19	85	0	51	41	35	12	10	1.77
1904837--1904885	22	2.2	22	85	7	64	22	16	18	42	1.88
1910055--1910132	42	2.0	40	85	10	106	37	2	3	56	1.31
1910055--1910136	40	2.0	41	86	6	114	36	2	4	56	1.34
1910746--1910789	18	2.6	17	82	10	54	31	2	2	63	1.19
1911445--1911501	27	2.2	26	81	12	71	52	1	3	42	1.28
1912741--1912825	2	42.5	2	97	0	161	49	1	0	49	1.08
1915572--1915609	17	2.3	17	90	4	60	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1918280--1918322	22	2.0	22	100	0	86	9	23	48	18	1.76
1918321--1918398	19	4.1	19	76	14	79	28	28	25	17	1.98
1923102--1923156	27	2.0	27	100	0	110	52	3	7	36	1.47
1924295--1924324	15	2.0	15	93	0	51	40	26	3	30	1.72
1927304--1927724	205	2.1	205	97	0	797	34	16	9	39	1.81
1928210--1928720	110	4.7	110	88	4	772	23	17	23	34	1.96
1928210--1928720	215	2.4	217	90	3	775	23	17	23	34	1.96
1932835--1932921	33	2.6	34	87	5	108	27	13	20	37	1.91
1932851--1932921	33	2.2	33	92	0	115	26	11	21	40	1.87
1932972--1933029	22	2.5	23	81	18	68	67	0	1	31	1.01
1943920--1943976	29	2.0	29	100	0	114	14	35	31	19	1.91
1943980--1944065	33	2.6	33	87	3	111	9	37	26	26	1.87
1943992--1944117	10	11.6	10	70	18	56	11	34	29	24	1.91
1944074--1944128	20	2.8	20	94	0	92	14	30	30	23	1.94
1944072--1944128	10	5.8	9	80	15	60	14	31	31	22	1.93
1944122--1944156	14	2.5	14	95	0	61	8	28	42	20	1.81
1948385--1948478	27	3.4	27	73	16	84	53	3	3	40	1.33
1948442--1948532	27	3.5	25	77	15	80	54	1	4	39	1.27
1949279--1949353	31	2.4	31	81	0	87	53	13	5	28	1.61
1952238--1952266	9	3.2	9	100	0	58	31	24	0	44	1.54
1954027--1954136	5	22.0	5	93	0	175	39	20	20	20	1.93
1965616--1965657	19	2.2	19	100	0	84	45	9	19	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1967630--1967662	15	2.2	15	94	0	57	24	0	24	51	1.48
1972240--1972291	26	2.0	26	100	0	104	34	23	15	26	1.94
1977033--1977075	22	2.0	22	86	9	61	18	0	18	62	1.32
1981610--1981694	41	2.1	41	86	0	116	31	8	23	36	1.84
1985478--1985516	2	19.5	2	100	0	78	48	0	0	51	1.00
1993107--1993146	20	2.0	20	90	0	62	32	10	0	57	1.32
1993110--1993154	20	2.3	20	84	3	56	31	13	0	55	1.38
1999111--1999232	23	5.3	23	85	2	129	17	20	23	38	1.93
2002672--2002704	2	16.5	2	100	0	66	51	0	0	48	1.00
2004451--2004507	29	2.0	29	96	0	105	26	12	14	47	1.79
2009080--2009136	29	2.0	29	100	0	114	26	14	14	45	1.82
2011358--2011387	12	2.5	12	100	0	60	46	0	43	10	1.37
2023807--2023913	20	5.3	20	79	7	101	41	25	14	19	1.89
2023786--2023913	40	3.2	40	78	12	138	39	24	14	21	1.91
2023861--2023933	19	3.7	19	85	5	83	35	23	13	27	1.92
2024739--2024772	12	2.8	12	90	0	50	55	29	0	14	1.40
2027209--2027244	18	2.0	18	94	0	63	55	22	2	19	1.56
2027578--2027642	20	3.2	20	76	12	69	18	20	18	43	1.89
2029111--2029155	6	7.5	6	84	0	63	62	22	0	15	1.33
2029112--2029155	12	3.7	12	90	0	70	61	22	0	15	1.34
2029669--2029722	28	1.9	28	84	0	72	48	20	0	31	1.50
2029686--2029722	14	2.6	14	100	0	74	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2030995--2031092	21	4.7	21	75	5	90	21	17	34	26	1.95
2030996--2031097	42	2.4	42	80	9	127	22	15	35	26	1.94
2033287--2033333	20	2.4	20	85	3	69	48	19	19	12	1.80
2033259--2033306	14	3.4	14	79	0	60	50	22	16	10	1.76
2033707--2033753	22	2.1	22	92	0	76	19	17	42	21	1.89
2033869--2033986	20	5.8	20	76	9	71	22	11	22	43	1.86
2033873--2034000	40	3.2	40	78	6	150	21	11	23	43	1.85
2035356--2035427	2	36.0	2	100	0	144	50	0	0	50	1.00
2037560--2037584	6	4.2	6	100	0	50	16	0	0	84	0.63
2044130--2044182	2	26.5	2	100	0	106	49	0	0	50	1.00
2044542--2044603	31	2.1	30	90	6	99	48	4	6	40	1.50
2049129--2049211	27	3.1	27	61	13	62	38	3	4	53	1.40
2050199--2050227	14	2.0	15	93	6	51	41	6	6	44	1.58
2051023--2051096	29	2.5	28	76	10	76	37	5	29	27	1.79
2051137--2051241	13	7.5	15	67	19	50	52	0	0	47	1.00
2058049--2058102	27	2.0	27	100	0	108	29	18	22	29	1.97
2060113--2060212	31	3.2	31	97	0	182	36	20	17	27	1.94
2062625--2062784	63	2.5	63	78	5	178	33	19	23	23	1.97
2063430--2063499	21	3.2	21	72	9	68	44	5	20	30	1.74
2066855--2067013	63	2.5	64	84	1	203	33	16	23	25	1.96
2066980--2067032	19	2.8	19	94	0	88	22	13	32	32	1.92
2067021--2067078	20	2.6	22	89	10	84	31	20	22	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2067679--2067748	21	3.2	21	72	9	68	44	5	20	30	1.74
2070284--2070358	35	2.1	35	90	0	114	44	21	0	34	1.53
2070354--2070429	35	2.2	35	85	0	107	40	0	17	42	1.49
2071176--2071205	13	2.2	14	94	5	53	40	13	26	20	1.89
2086278--2086327	16	3.1	16	79	0	55	46	18	2	34	1.60
2086466--2086498	16	2.0	17	94	5	59	36	3	0	60	1.12
2086624--2086675	25	2.2	24	83	10	63	48	1	1	48	1.24
2088657--2088728	30	2.3	31	79	13	76	34	8	1	55	1.39
2089346--2089370	2	12.5	2	100	0	50	48	0	0	52	1.00
2090921--2090950	15	2.0	15	93	0	51	36	3	0	60	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15