Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006710.1 Hibiscus syriacus cultivar Beakdansim tig00016725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2941931

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1236 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2792816--2792862
24
2.0
24
86
0
67
38
17
19
25
1.92
2793897--2793956
30
2.0
31
86
3
86
28
8
10
53
1.63
2803997--2804060
18
3.2
20
77
18
55
79
6
12
1
0.98
2803997--2804063
21
3.0
22
79
12
66
79
5
13
1
0.99
2807048--2807087
19
2.0
20
86
13
57
67
0
10
22
1.20
2811345--2811379
8
4.4
8
88
0
52
0
20
0
80
0.72
2811658--2811706
22
2.2
22
86
13
66
67
0
8
24
1.18
2812724--2812756
13
2.5
13
100
0
66
39
24
9
27
1.85
2824003--2824109
56
2.0
52
89
8
162
28
19
8
42
1.80
2826652--2826711
30
2.0
31
86
3
86
28
8
10
53
1.63
2829678--2829724
24
2.0
24
86
0
67
38
17
19
25
1.92
2830758--2830817
30
2.0
31
86
3
86
28
8
10
53
1.63
2848412--2848916
250
2.0
253
98
1
971
27
28
10
33
1.90
2849718--2849760
20
2.2
20
87
4
61
48
9
9
32
1.67
2850685--2850728
17
2.6
17
92
0
70
25
29
13
31
1.94
2850832--2850860
10
2.9
10
100
0
58
37
10
20
31
1.86
2853964--2854007
17
2.6
17
96
0
79
22
29
15
31
1.95
2854994--2855022
11
2.6
11
100
0
58
31
10
37
20
1.86
2857478--2857510
17
1.9
17
100
0
66
36
0
30
33
1.58
2857715--2857772
30
1.9
30
82
6
73
8
18
5
67
1.37
2858024--2858057
15
2.2
16
89
5
52
58
0
20
20
1.39
2868513--2868542
15
2.1
15
93
6
53
0
20
3
76
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2868609--2868633
11
2.3
11
100
0
50
16
36
8
40
1.77
2881366--2881410
23
2.0
23
90
0
72
11
13
15
60
1.60
2889412--2889465
23
2.2
25
87
6
76
11
16
12
59
1.61
2891721--2891780
17
3.6
17
77
8
52
15
18
0
66
1.25
2895514--2895625
35
3.2
35
80
2
127
28
35
3
32
1.74
2904345--2904382
19
2.0
19
100
0
76
26
15
26
31
1.96
2913568--2913623
11
4.8
11
74
20
51
78
3
16
1
0.97
2914435--2914464
13
2.4
13
94
5
53
43
0
30
26
1.55
2920105--2920153
19
2.5
20
78
21
59
67
0
8
24
1.18
2924694--2924742
19
2.5
20
78
21
59
67
0
8
24
1.18
2930179--2930223
11
4.1
11
85
5
56
15
11
2
71
1.24
2932904--2932948
11
4.1
11
85
5
56
15
11
2
71
1.24
2936560--2936600
20
2.0
20
90
9
66
65
0
14
19
1.26
2938423--2938467
23
2.0
23
90
0
72
60
15
13
11
1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!