genome.fa.s6710.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006710.1 Hibiscus syriacus cultivar Beakdansim tig00016725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2941931

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1236 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275650--275698	22	2.2	22	88	3	71	55	14	0	30	1.40
275653--276128	80	5.9	80	81	10	499	52	14	0	32	1.44
275706--275779	22	3.2	21	70	20	58	52	16	1	29	1.52
275840--275882	22	2.0	22	95	0	77	51	11	0	37	1.39
275497--276183	134	5.0	131	85	10	704	52	13	0	33	1.45
275842--275890	22	2.2	22	85	3	62	55	12	0	32	1.37
275896--275970	22	3.2	23	75	17	82	54	17	0	28	1.43
276030--276104	22	3.2	23	75	17	82	54	17	0	28	1.43
276108--276150	22	2.0	22	95	0	77	51	11	0	37	1.39
276110--276158	22	2.2	22	85	3	62	55	12	0	32	1.37
276162--276204	22	2.0	22	100	0	86	51	13	0	34	1.42
276164--276212	22	2.2	22	88	3	71	55	14	0	30	1.40
276216--276271	22	2.5	22	94	0	94	50	8	0	41	1.34
276257--276286	15	2.0	15	93	0	51	50	0	0	50	1.00
276235--276338	37	2.9	36	77	17	117	47	7	0	45	1.31
301365--301410	21	2.2	21	88	0	65	28	26	8	36	1.86
301405--301615	114	1.9	110	85	5	289	32	23	11	31	1.91
316930--316955	7	3.7	7	100	0	52	46	0	0	53	1.00
323979--324016	20	1.9	20	94	0	67	63	0	0	36	0.95
324234--324519	73	3.9	73	91	1	457	39	12	17	31	1.86
325372--325524	53	2.9	53	85	1	207	26	22	12	37	1.90
327116--327260	16	8.1	18	75	19	110	2	17	0	80	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327116--327258	25	5.8	25	74	14	111	2	18	0	79	0.82
327116--327260	44	3.3	42	78	14	150	2	17	0	80	0.82
327140--327264	10	12.0	10	74	14	94	1	18	0	80	0.80
327118--327259	38	3.6	40	79	12	143	2	18	0	79	0.83
330615--330655	17	2.4	17	100	0	82	43	9	4	41	1.59
331060--331093	2	17.0	2	100	0	68	50	0	0	50	1.00
332658--332701	3	15.0	3	85	4	63	63	2	0	34	1.07
339393--339451	16	3.7	16	97	0	100	57	20	11	10	1.63
340365--340440	14	6.0	14	72	22	78	55	25	11	7	1.63
340365--340439	24	3.1	24	94	0	123	56	25	10	8	1.61
341650--341702	27	1.9	28	84	3	72	45	3	1	49	1.31
342467--342505	15	2.6	15	87	0	51	23	0	41	35	1.55
346388--346440	21	2.5	21	79	11	63	73	1	22	1	1.03
346388--346444	3	20.0	3	80	7	57	71	1	24	1	1.04
346898--346940	20	2.2	20	86	0	59	55	2	13	27	1.51
351798--351873	3	25.7	3	79	12	86	63	1	0	35	1.03
351784--351873	36	2.6	34	81	13	103	62	1	0	36	1.03
352078--352422	120	2.9	121	84	4	430	27	17	14	40	1.88
352333--352668	113	3.0	113	91	0	548	28	17	15	38	1.90
353810--353844	18	1.9	18	100	0	70	57	5	5	31	1.46
364852--364905	23	2.4	23	79	17	60	68	0	3	27	1.06
367149--367224	3	25.7	3	79	12	68	60	1	0	38	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367149--367224	27	2.9	26	78	7	82	60	1	0	38	1.05
369895--369923	15	1.9	15	100	0	58	55	3	0	41	1.17
370401--370445	21	2.1	21	95	0	81	40	6	8	44	1.62
375456--375495	15	2.7	15	92	0	62	32	20	7	40	1.80
376107--376151	19	2.3	20	85	11	58	71	13	0	15	1.15
376562--376610	21	2.2	23	89	7	75	42	18	12	26	1.85
383449--383596	30	5.0	30	73	15	130	40	8	0	51	1.32
383449--383596	29	5.0	29	76	13	142	40	8	0	51	1.32
383445--383599	59	2.7	57	77	11	163	40	7	0	51	1.31
383608--383716	25	4.5	23	74	13	87	59	2	3	33	1.29
383710--383738	14	2.1	14	100	0	58	55	0	13	31	1.39
400024--400065	15	2.6	16	82	17	52	61	0	4	33	1.17
402160--402197	3	13.0	3	88	5	60	63	0	2	34	1.09
402755--402807	20	2.7	20	80	11	63	32	18	16	32	1.94
403731--403792	31	2.0	31	84	6	81	53	6	4	35	1.48
418681--418798	43	2.7	44	86	5	150	35	11	22	30	1.90
420343--420816	135	3.5	135	82	8	550	29	18	20	31	1.97
421002--421045	3	15.0	3	90	4	72	34	2	0	63	1.07
434605--434631	4	6.8	4	100	0	54	22	0	0	77	0.76
444193--444660	55	8.5	55	85	3	482	31	25	16	26	1.96
444180--444660	110	4.4	109	83	3	547	31	25	16	26	1.97
444180--444660	165	2.9	164	83	3	581	31	25	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446033--446204	93	1.8	95	82	6	224	9	14	1	74	1.13
446044--446192	7	20.7	7	74	16	92	10	13	1	74	1.13
446131--446220	22	4.3	21	74	14	69	11	12	0	76	1.02
449694--449727	2	17.0	2	93	0	59	50	2	0	47	1.16
455507--455596	45	2.0	47	86	4	130	40	21	8	30	1.83
455507--455617	45	2.3	46	81	7	125	42	19	9	28	1.82
461239--461287	21	2.3	21	82	6	55	30	18	18	32	1.95
461317--461361	20	2.2	20	92	0	72	26	26	20	26	1.99
461535--461603	22	3.1	22	89	0	111	21	43	14	20	1.87
461941--462029	20	4.8	20	71	17	66	20	20	23	35	1.95
463425--463490	30	2.2	30	100	0	132	28	3	13	54	1.54
463640--463917	20	14.9	20	73	13	216	23	19	21	35	1.96
463607--463815	34	5.8	34	72	15	152	22	19	21	36	1.95
463733--463889	54	2.9	54	92	0	260	21	19	22	37	1.94
463601--463914	74	4.3	73	81	7	307	22	19	21	36	1.95
467226--467331	20	5.3	20	92	4	178	22	19	29	28	1.98
467378--467426	21	2.4	21	86	10	66	36	20	22	20	1.95
467459--467497	19	2.1	19	90	0	60	25	17	25	30	1.97
469309--469560	30	8.4	30	74	2	175	18	19	19	42	1.89
469312--469545	60	3.9	60	77	2	227	19	18	20	41	1.91
471947--472037	2	45.5	2	100	0	182	50	0	0	49	1.00
479960--480019	23	2.6	22	84	5	66	46	0	1	51	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485604--485628	3	8.3	3	100	0	50	68	0	0	32	0.90
486770--486823	3	18.0	3	100	0	108	33	0	0	66	0.92
486832--486864	17	1.9	17	93	0	57	24	0	9	66	1.20
488071--488123	21	2.5	21	78	6	63	22	24	18	33	1.97
488113--488164	21	2.5	21	81	3	61	40	17	21	21	1.91
488153--488280	20	6.3	20	86	5	141	28	27	18	25	1.98
488150--488266	41	2.9	42	85	3	150	31	26	18	23	1.97
488154--488280	40	3.2	40	86	3	157	28	27	18	25	1.98
488199--488291	20	4.7	20	95	0	150	24	26	20	27	1.99
488215--488300	40	2.2	40	86	0	118	26	26	19	26	1.99
488495--488575	20	4.1	20	91	3	128	39	22	22	16	1.92
488594--488658	19	3.7	19	82	13	86	13	20	18	47	1.82
490243--490334	42	2.2	42	88	1	141	20	15	42	21	1.89
490270--490330	21	2.9	21	73	9	70	21	13	42	22	1.87
490672--490752	20	4.1	20	88	0	72	34	25	18	20	1.96
490698--490772	20	3.8	20	89	1	107	34	24	25	16	1.95
490757--490817	19	3.5	19	74	21	78	45	19	19	14	1.85
490773--490831	14	3.9	14	72	20	55	49	22	16	11	1.78
490757--490836	33	2.4	33	95	0	142	47	21	18	12	1.81
490848--490939	19	5.4	19	66	24	69	11	17	20	50	1.78
490859--490923	14	4.4	14	78	19	60	10	15	21	52	1.73
490848--490939	33	2.8	33	94	0	157	11	17	20	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490924--490967	20	2.2	20	92	4	72	20	25	18	36	1.95
491458--491498	17	2.4	17	95	0	73	36	4	34	24	1.77
491533--491580	18	2.7	18	93	0	87	14	12	45	27	1.81
492885--492923	20	2.0	20	94	0	69	51	17	15	15	1.77
493436--493506	20	3.5	20	94	0	124	23	19	28	28	1.99
493519--493571	20	2.6	21	78	6	63	15	22	22	39	1.91
494581--494637	28	2.1	27	83	3	69	40	1	0	57	1.09
494624--494653	15	1.9	16	93	6	53	33	3	0	63	1.11
497537--497571	6	5.8	6	93	0	61	37	0	48	14	1.44
509765--509811	16	3.1	15	80	14	53	34	4	2	59	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11