genome.fa.s6710.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006710.1 Hibiscus syriacus cultivar Beakdansim tig00016725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2941931

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1236 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512035--512254	95	2.3	94	80	1	233	31	15	25	28	1.95
512202--512253	22	2.5	20	81	6	59	28	13	26	30	1.94
512571--513146	59	9.8	59	89	1	877	36	12	21	29	1.90
525902--525957	21	2.6	21	73	18	53	48	1	7	42	1.41
525949--525994	23	2.0	24	86	4	67	39	0	4	56	1.19
527274--527307	16	2.1	16	89	10	52	50	0	2	47	1.16
532635--532668	15	2.3	15	94	0	59	20	5	23	50	1.70
535870--535920	11	4.5	11	79	13	59	19	0	1	78	0.85
536864--536922	25	2.4	25	97	0	109	28	11	18	40	1.86
542597--542626	13	2.4	12	89	10	51	53	6	10	30	1.60
544887--544956	37	1.9	37	83	13	92	38	15	12	32	1.86
545310--545640	130	2.5	129	80	3	340	24	32	17	26	1.97
547401--547483	30	2.8	30	85	3	96	21	10	7	60	1.54
547462--547521	29	2.1	29	83	0	75	16	13	13	56	1.67
569705--569734	14	2.1	14	93	0	51	56	6	13	23	1.60
569947--569971	12	2.1	12	100	0	50	20	16	8	56	1.65
569971--570000	6	5.0	6	100	0	60	33	33	0	33	1.58
573637--573729	32	2.8	33	83	4	100	51	21	8	18	1.72
575933--575966	8	4.2	8	92	0	59	58	0	2	38	1.13
589006--589057	8	6.5	8	91	6	70	80	0	7	11	0.89
589006--589049	15	2.9	15	89	3	70	81	0	4	13	0.83
589997--590451	54	8.4	54	82	9	335	30	18	24	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589987--590451	163	2.9	163	78	10	366	30	18	24	26	1.97
590105--590471	107	3.4	107	81	8	361	31	19	24	25	1.98
589989--590506	55	9.6	54	82	9	354	30	19	24	25	1.98
590214--590525	54	5.7	55	88	4	327	31	21	23	23	1.99
590797--590830	8	4.2	8	92	0	59	58	0	2	38	1.13
600116--600163	19	2.5	19	89	0	78	25	25	18	31	1.98
601498--601706	76	2.7	75	91	1	328	26	2	11	58	1.45
606738--606777	21	1.9	21	89	0	62	37	25	12	25	1.91
607573--607610	20	1.9	20	94	0	67	23	21	21	34	1.97
611618--611716	9	10.3	9	78	10	81	28	26	28	17	1.97
611620--611717	19	5.1	19	82	13	101	28	26	26	18	1.98
611624--611717	10	9.7	10	80	13	99	28	26	26	18	1.98
611624--611716	29	3.2	28	86	6	123	29	26	26	17	1.97
618934--618971	19	2.0	19	94	0	67	26	26	28	18	1.98
618937--619034	9	10.3	9	77	8	79	28	26	27	17	1.98
618939--619035	19	5.1	19	78	12	90	28	26	25	18	1.98
618962--619035	29	2.5	30	89	6	116	29	27	25	17	1.97
618943--619035	10	9.8	9	75	9	69	29	26	25	18	1.98
620851--620888	20	1.9	20	100	0	76	23	23	21	31	1.98
620915--621059	65	2.2	65	80	7	161	27	21	16	34	1.95
621802--621835	17	2.0	17	88	0	50	23	0	2	73	0.97
621889--621953	8	8.8	8	75	11	59	24	3	0	72	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624544--624800	135	2.0	130	85	8	357	45	5	10	38	1.62
633907--633979	6	11.2	6	74	18	58	76	2	4	16	1.05
633894--633979	32	2.9	28	73	18	77	75	3	4	16	1.11
636847--636880	12	2.6	13	86	13	52	73	0	2	23	0.97
637368--637402	18	1.9	18	88	0	52	25	5	14	54	1.62
638442--638482	21	2.0	21	100	0	82	48	9	14	26	1.75
640919--641070	3	51.3	3	94	5	265	32	0	0	66	0.97
641382--641866	137	3.5	137	83	2	623	24	16	24	33	1.96
648274--648407	65	2.1	65	92	0	223	50	14	6	28	1.69
650757--650926	43	4.0	43	79	3	128	27	17	17	38	1.92
650790--650926	43	3.2	42	82	1	148	24	17	16	41	1.89
650790--650966	43	4.1	43	77	3	133	25	14	17	41	1.88
655893--656204	37	8.7	35	77	14	257	41	4	8	45	1.53
655870--656204	76	4.7	71	83	10	373	42	4	7	45	1.52
668696--668744	18	2.7	18	96	0	89	40	16	20	22	1.91
673002--673538	201	2.7	200	82	3	616	32	18	20	28	1.96
674074--674467	37	10.8	36	75	12	290	45	4	7	42	1.53
674095--674426	74	4.4	73	80	10	334	44	5	7	42	1.55
674074--674512	36	11.9	34	75	14	283	44	4	8	42	1.54
674095--674420	147	2.2	145	84	9	390	44	5	7	42	1.55
674552--674595	22	2.0	21	87	12	63	11	6	0	81	0.86
676083--676114	12	2.7	12	100	0	64	34	21	43	0	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
680897--681165	133	2.0	132	90	2	423	43	8	11	36	1.71
684506--684545	21	1.9	21	85	10	55	32	27	5	35	1.79
689416--689711	47	6.3	47	94	0	502	39	8	19	32	1.81
689501--689578	27	3.1	27	61	30	64	43	8	16	30	1.79
690181--690230	20	2.5	21	80	9	59	22	28	12	38	1.89
692210--692242	16	2.0	17	88	5	50	78	6	0	15	0.93
694039--694103	20	3.3	19	85	6	85	33	21	13	30	1.92
699693--699795	36	2.9	36	88	5	163	38	19	15	26	1.91
700261--700345	43	2.0	43	90	6	138	29	8	23	38	1.84
702963--703106	72	2.0	72	93	0	243	25	21	18	34	1.96
706152--706367	54	4.0	54	88	0	297	35	13	24	26	1.92
706733--706790	22	2.6	22	86	0	89	31	18	12	37	1.88
707457--707939	45	10.5	46	86	3	606	27	21	20	30	1.98
707988--708284	39	7.6	39	89	0	414	42	11	24	21	1.86
707988--708723	117	6.5	117	80	7	767	40	11	25	22	1.87
708202--708265	19	3.3	19	66	12	58	43	10	29	15	1.81
708239--708294	26	2.1	27	80	9	71	39	10	28	21	1.87
708209--708349	65	2.2	65	86	0	192	39	12	26	21	1.89
708248--708310	26	2.4	26	91	0	99	34	12	26	25	1.92
708131--708752	143	4.3	142	77	12	574	39	11	26	22	1.88
708274--708658	39	9.9	39	84	1	479	38	11	25	23	1.89
708111--708723	182	3.3	182	85	4	814	39	11	25	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
708274--708723	39	11.9	38	78	8	406	39	11	25	23	1.88
708624--708684	26	2.3	26	85	0	77	45	6	26	21	1.76
708585--708752	65	2.6	65	85	0	237	42	10	25	21	1.84
708694--708749	26	2.2	26	90	0	85	46	7	28	17	1.75
710307--710335	2	14.5	2	100	0	58	51	0	0	48	1.00
710486--710550	2	33.0	2	96	3	123	50	0	0	49	1.00
710597--710636	20	2.1	20	86	9	57	45	0	0	55	0.99
712863--713024	81	2.0	81	100	0	324	35	13	19	30	1.91
721324--721401	38	2.1	38	97	0	147	42	15	8	33	1.78
723079--723119	20	2.0	21	90	4	66	48	19	0	31	1.49
724292--724369	29	2.6	30	73	6	68	29	19	7	43	1.78
725474--725678	104	2.0	104	96	0	374	24	12	21	40	1.88
726211--726302	40	2.3	41	88	5	134	48	13	4	33	1.61
726433--726503	15	4.7	15	80	0	61	4	18	28	49	1.66
728706--728813	42	2.6	42	82	2	119	21	43	7	27	1.79
731772--731834	18	3.2	20	78	13	76	36	14	17	31	1.90
731779--731843	20	3.3	20	81	8	80	35	16	16	30	1.92
739280--739338	29	2.0	29	100	0	118	49	13	13	23	1.78
744622--744653	9	3.6	9	91	0	55	37	9	6	46	1.61
746041--746114	4	19.8	4	82	13	61	41	1	2	54	1.23
746041--746114	6	13.2	6	72	18	61	41	1	2	54	1.23
746041--746114	10	7.9	10	70	19	61	41	1	2	54	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
750139--750320	95	1.9	95	88	2	276	31	19	18	30	1.96
751730--751783	15	3.2	17	70	19	58	31	18	5	44	1.73
751847--751966	37	3.3	36	82	6	161	22	18	13	45	1.84
751701--751815	34	3.2	36	85	6	153	31	20	11	36	1.88
751782--752137	194	1.8	194	91	1	588	27	17	13	41	1.87
751963--752257	138	2.1	138	89	3	443	29	18	12	39	1.88
752087--752281	102	1.9	102	85	3	268	30	18	11	39	1.86
752110--752308	102	2.0	102	86	4	285	27	19	12	40	1.87
754145--754274	6	21.7	6	83	0	170	45	3	4	46	1.39
754145--754274	14	9.3	14	87	0	170	45	3	4	46	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11