genome.fa.s7746.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007746.1 Hibiscus syriacus cultivar Beakdansim tig00110009_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3674400

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  1  of  15  ( 1700 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3272--3310	20	2.0	20	94	0	69	0	7	12	79	0.93
3272--3308	19	1.9	19	88	0	56	0	8	10	81	0.89
9495--9524	15	2.1	15	93	6	53	0	20	3	76	0.92
9523--9576	26	2.2	26	87	12	78	11	11	18	59	1.60
12073--12112	19	2.0	20	90	4	64	65	0	10	25	1.24
18571--18609	19	2.0	20	85	5	53	23	12	0	64	1.28
18569--18612	19	2.3	18	81	11	52	25	11	0	63	1.27
18871--18918	19	2.5	20	86	6	64	75	0	18	6	1.01
29653--29682	13	2.4	13	94	5	53	43	0	30	26	1.55
44034--44073	19	2.0	20	90	4	64	20	15	0	65	1.28
44338--44402	10	6.8	10	72	19	50	76	1	18	3	0.99
49796--49835	19	2.0	20	85	4	55	22	12	0	65	1.26
50100--50161	19	3.2	19	84	6	72	79	3	16	1	0.95
50100--50147	19	2.5	20	90	6	73	77	4	16	2	1.03
50110--50162	27	1.9	27	88	3	79	77	3	15	3	1.06
54863--54905	6	7.2	6	79	10	52	0	18	0	81	0.69
54868--54904	20	2.0	20	89	10	60	0	18	0	81	0.70
58554--58610	27	2.1	27	87	6	80	59	14	15	10	1.60
62281--62341	14	4.4	13	76	12	59	77	1	19	1	0.95
62280--62341	18	3.2	19	73	20	56	77	1	19	1	0.94
66537--66574	19	2.0	20	89	5	60	21	15	0	63	1.31
67277--67317	22	1.9	21	90	5	64	36	36	0	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73186--73236	24	2.1	24	85	0	66	33	17	11	37	1.86
74719--74750	14	2.3	14	94	0	55	50	3	37	9	1.51
77315--77385	36	2.1	34	84	7	90	28	42	4	25	1.73
77785--77823	20	2.0	20	89	0	60	84	2	12	0	0.72
77786--77826	14	2.6	17	81	18	61	85	2	12	0	0.70
87170--87260	46	2.0	46	100	0	182	35	15	24	25	1.94
88258--88317	23	2.5	24	83	2	77	65	13	13	8	1.48
91966--92004	19	2.1	19	90	0	60	38	7	2	51	1.44
92355--92464	35	3.1	35	84	2	141	29	32	3	34	1.75
93386--93425	15	2.7	15	96	0	71	62	0	20	17	1.33
97472--98441	498	1.9	498	98	0	1868	34	14	13	36	1.86
111085--111123	11	3.5	11	100	0	78	74	10	15	0	1.07
111078--111142	20	3.2	20	83	12	78	76	9	10	3	1.11
111108--111152	20	2.3	19	81	11	54	75	6	8	8	1.19
131432--131461	13	2.4	13	94	5	53	43	0	30	26	1.55
143900--143942	13	3.4	13	90	3	70	44	0	27	27	1.55
154926--154955	13	2.4	13	94	5	53	26	30	0	43	1.55
157697--157756	23	2.6	23	76	7	59	10	15	8	66	1.43
157712--157756	23	2.0	23	86	0	63	11	13	11	64	1.50
159830--159869	19	2.0	20	90	4	64	20	15	0	65	1.28
160109--160144	16	2.2	16	100	0	72	72	5	11	11	1.28
164285--164324	19	2.0	20	85	4	55	20	12	2	65	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166295--166350	17	3.4	17	76	9	62	78	5	12	3	1.05
171035--171074	19	2.0	20	85	4	55	65	2	12	20	1.38
176868--176896	11	2.6	11	100	0	58	0	0	6	93	0.36
178634--178713	11	7.3	11	79	8	74	5	17	1	76	1.03
178984--179023	19	2.0	20	90	4	64	65	0	12	22	1.26
180384--180443	30	2.0	31	87	9	88	53	11	8	26	1.65
183215--183244	13	2.4	13	94	5	53	43	0	30	26	1.55
186863--186909	11	4.4	11	84	12	62	78	0	21	0	0.75
187843--188900	533	2.0	533	93	0	1803	35	18	21	25	1.95
189524--189583	30	2.0	31	86	3	86	28	8	8	55	1.59
190476--190526	20	2.6	20	90	3	77	35	15	5	43	1.71
190941--190980	19	2.0	20	90	4	64	20	15	0	65	1.28
192998--193733	407	1.8	407	88	1	1127	30	22	15	31	1.95
195803--195844	22	1.9	22	85	9	59	40	19	0	40	1.51
197806--197839	13	2.8	12	91	8	52	85	0	14	0	0.60
197806--197839	6	5.7	6	90	10	52	85	0	14	0	0.60
202916--202966	20	2.6	20	84	3	59	5	15	3	74	1.16
207010--207048	19	2.0	20	90	5	62	20	15	0	64	1.30
207312--207359	25	1.9	25	87	8	71	77	2	14	6	1.06
211667--211706	19	2.0	20	90	4	64	65	0	15	20	1.28
216851--216890	19	2.0	20	90	4	64	65	0	15	20	1.28
227977--228300	161	2.0	162	98	1	625	27	24	14	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236812--236873	23	2.6	23	82	17	65	8	17	4	69	1.31
236852--236883	17	1.9	17	93	6	57	0	15	6	78	0.95
241455--241505	20	2.6	20	84	3	68	35	13	7	43	1.73
241926--241962	18	2.1	18	90	10	58	24	10	0	64	1.25
242240--242267	8	3.5	8	100	0	56	78	0	21	0	0.75
242228--242280	19	3.0	18	80	20	67	79	0	20	0	0.74
242237--242280	16	2.5	17	82	14	54	79	0	20	0	0.73
243540--243607	24	2.8	24	81	0	82	33	16	19	30	1.93
244632--244691	30	2.0	31	86	3	86	28	8	10	53	1.63
245580--245631	21	2.6	20	87	6	70	40	11	5	42	1.65
250430--250494	27	2.4	28	80	12	80	61	10	16	10	1.56
250484--250508	5	5.0	5	100	0	50	80	0	20	0	0.72
263939--263963	7	3.6	7	100	0	50	0	0	12	88	0.53
267815--267857	23	1.9	22	86	13	61	34	16	13	34	1.88
281543--281583	22	1.9	21	90	5	64	36	36	0	26	1.57
281602--281645	21	2.0	21	87	12	63	15	22	0	61	1.34
281891--281949	26	2.3	26	88	8	86	72	5	15	6	1.23
287491--287542	22	2.4	23	84	15	67	17	23	0	59	1.37
288742--288846	35	3.0	35	85	1	147	31	4	37	26	1.77
294803--294845	19	2.2	20	87	4	61	48	6	9	34	1.62
297558--297601	16	2.9	16	93	6	74	36	0	20	43	1.52
297992--298090	35	2.8	35	80	4	110	34	5	34	26	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304995--305037	19	2.2	20	87	4	61	51	4	9	34	1.55
308665--310214	804	1.9	804	92	0	2589	32	19	17	30	1.95
313908--313958	23	2.3	22	80	10	59	13	11	17	56	1.66
316268--316310	19	2.2	20	87	4	61	48	6	9	34	1.62
322830--322887	28	2.2	26	81	12	64	8	20	3	67	1.33
323152--323193	10	4.0	11	78	9	52	64	0	16	19	1.30
323342--323450	35	3.1	35	82	2	130	32	3	37	26	1.74
327362--327405	21	2.0	21	87	12	63	15	22	0	61	1.34
333638--333676	20	2.0	19	85	5	51	43	10	17	28	1.82
334930--334959	13	2.4	13	94	5	53	26	30	0	43	1.55
348457--348553	50	1.9	52	85	4	135	18	22	26	31	1.97
349876--349934	13	4.8	13	71	12	52	28	35	1	33	1.68
349869--349980	35	3.2	35	85	1	143	29	35	3	31	1.75
350340--350364	13	1.9	13	100	0	50	80	0	16	4	0.87
359496--359891	195	2.0	198	98	1	771	22	15	22	38	1.92
368233--368263	15	2.1	15	100	0	62	12	54	19	12	1.70
378648--378693	22	2.1	22	95	0	83	32	17	19	30	1.95
379729--379806	35	2.2	35	90	0	120	32	37	1	29	1.66
384773--384807	17	2.1	17	88	0	52	42	0	28	28	1.56
385295--385347	18	2.8	18	79	20	56	67	0	15	16	1.23
385331--385364	16	2.1	15	89	10	50	67	0	20	11	1.21
388158--388234	22	3.3	23	73	26	56	55	3	9	31	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388864--388909	24	1.9	24	86	0	65	28	21	10	39	1.87
393481--393509	15	2.0	15	93	6	51	0	20	3	75	0.94
404921--404949	15	2.0	15	93	6	51	75	3	20	0	0.94
412942--412991	21	2.4	21	100	0	100	24	10	28	38	1.87
425363--425415	19	2.6	21	85	8	65	47	7	13	32	1.70
427459--427503	17	2.6	17	92	0	72	17	20	11	51	1.75
429420--429558	72	1.9	71	84	7	183	22	17	20	39	1.92
432382--432409	2	14.0	2	100	0	56	50	0	0	50	1.00
433519--433561	20	2.2	20	87	4	61	34	9	6	48	1.62
433905--433962	13	4.7	13	75	12	50	29	37	0	32	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15