genome.fa.s7746.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007746.1 Hibiscus syriacus cultivar Beakdansim tig00110009_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3674400

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  6  of  15  ( 1700 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1504464--1504744	137	2.1	137	85	2	377	29	13	16	41	1.85
1512287--1512328	21	2.0	22	85	4	59	38	2	11	47	1.53
1520850--1520919	20	3.5	20	96	0	122	42	14	12	30	1.83
1521758--1521962	104	2.0	103	95	2	367	32	6	7	53	1.56
1522376--1522405	3	10.0	3	100	0	60	66	0	0	33	0.92
1536877--1536907	15	2.1	15	93	0	53	22	3	0	74	0.96
1536878--1537074	108	1.8	108	94	0	349	33	6	8	51	1.57
1537341--1537383	23	1.9	23	85	4	61	46	6	4	41	1.51
1537709--1537784	30	2.5	31	73	26	90	23	7	13	55	1.64
1545477--1545523	20	2.4	19	89	3	67	80	2	2	14	0.89
1545471--1545543	30	2.3	30	83	11	83	76	2	2	17	1.02
1545496--1545574	9	8.7	9	74	10	63	74	5	2	17	1.11
1545505--1545554	21	2.3	22	86	3	66	74	6	2	18	1.12
1545731--1545759	2	14.5	2	100	0	58	51	0	0	48	1.00
1546952--1547035	35	2.5	34	94	3	143	32	9	19	39	1.83
1547056--1547113	15	3.5	15	71	24	53	39	17	20	22	1.92
1547053--1547151	36	2.8	37	84	6	125	40	17	22	20	1.91
1547221--1547405	36	5.3	36	67	17	102	37	13	21	28	1.91
1547319--1547404	37	2.4	35	84	5	100	36	15	23	25	1.94
1547189--1547572	102	3.8	101	83	1	428	38	12	19	29	1.88
1547348--1547669	167	1.9	166	90	0	509	40	12	18	29	1.87
1547475--1547617	65	2.2	65	83	2	180	37	12	19	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1547644--1547698	21	2.6	21	91	0	83	47	10	18	23	1.80
1547765--1547879	36	3.2	37	67	13	103	40	15	17	26	1.90
1547665--1547918	73	3.5	73	84	4	309	40	14	18	25	1.89
1549066--1549418	183	1.9	182	92	0	598	30	20	20	29	1.97
1553427--1553549	27	4.6	26	71	17	76	68	4	5	21	1.30
1554833--1554876	10	4.4	10	80	11	54	11	25	29	34	1.91
1554813--1554876	30	2.2	29	83	10	78	14	25	25	35	1.93
1554615--1555152	269	2.0	268	98	1	1051	21	24	27	26	1.99
1555108--1555145	10	3.8	10	80	13	51	13	23	28	34	1.92
1555467--1555511	22	2.0	23	95	4	83	37	4	31	26	1.76
1585013--1585042	13	2.3	13	100	0	60	30	6	16	46	1.73
1593786--1593821	8	4.6	8	89	3	56	77	0	13	8	0.98
1593758--1593831	27	2.7	27	75	21	73	75	2	12	9	1.14
1595073--1595180	44	2.5	43	81	1	117	31	16	12	38	1.87
1596640--1596702	26	2.4	25	77	15	65	19	3	11	66	1.36
1596998--1597025	2	14.0	2	100	0	56	50	0	0	50	1.00
1597025--1597065	2	20.5	2	100	0	82	51	0	48	0	1.00
1607193--1607236	21	2.1	21	84	16	56	81	0	13	4	0.83
1608444--1608564	44	2.8	43	81	3	136	31	17	16	34	1.92
1610278--1610311	15	2.2	15	89	5	50	17	14	5	61	1.52
1614716--1614756	3	13.7	3	89	0	64	63	0	4	31	1.15
1614716--1614763	12	4.0	12	91	0	51	60	2	8	29	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1624150--1624175	13	2.0	13	100	0	52	38	23	38	0	1.55
1626162--1626203	17	2.4	19	84	15	63	30	2	0	66	1.04
1626657--1626848	96	2.0	96	100	0	384	28	19	15	36	1.93
1634094--1634423	165	2.0	167	98	1	646	30	19	18	31	1.95
1636436--1636490	21	2.6	21	97	0	101	23	23	20	32	1.98
1639632--1639672	21	2.0	21	100	0	82	26	14	24	34	1.94
1667300--1667358	30	1.9	32	82	6	77	38	15	1	44	1.56
1669953--1670018	3	22.0	3	96	0	123	33	0	1	65	1.02
1670312--1670506	50	3.9	49	79	6	178	35	11	6	46	1.66
1670672--1670716	20	2.2	20	92	0	72	26	15	22	35	1.94
1670828--1670879	21	2.5	21	83	0	68	38	21	9	30	1.85
1674098--1674148	23	2.2	23	78	0	57	23	13	17	45	1.84
1676265--1676305	20	2.0	21	90	4	66	39	0	0	60	0.96
1676890--1676943	26	2.1	26	100	0	108	29	24	27	18	1.98
1682506--1682556	26	2.0	26	84	7	68	54	3	0	41	1.19
1682692--1682727	18	2.0	17	89	10	54	58	0	5	36	1.22
1683035--1683096	31	2.0	32	83	3	81	43	24	9	22	1.83
1683412--1683459	23	2.0	24	84	4	62	27	0	4	68	1.07
1683424--1683499	23	3.3	23	66	10	66	31	1	3	63	1.21
1683863--1683918	24	2.3	24	93	0	94	16	19	12	51	1.75
1683917--1683954	2	19.0	2	100	0	76	50	50	0	0	1.00
1683971--1684257	2	144.0	2	99	0	567	50	49	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1684257--1684282	2	13.0	2	100	0	52	50	0	0	50	1.00
1687177--1687227	24	2.1	24	85	0	66	31	19	11	37	1.88
1691154--1691204	24	2.1	24	85	0	66	33	19	11	35	1.88
1699035--1699372	45	7.5	45	89	1	455	29	21	10	38	1.86
1699975--1700027	20	2.6	21	85	11	67	30	22	16	30	1.96
1703512--1703549	19	2.0	19	100	0	76	26	5	15	52	1.64
1703514--1703555	19	2.2	19	91	0	66	26	9	9	54	1.63
1703737--1703784	20	2.4	20	85	0	60	56	14	10	18	1.66
1703753--1703858	40	2.7	40	76	5	115	51	14	11	22	1.73
1703751--1703816	20	3.3	19	76	4	60	56	10	10	22	1.64
1710025--1710079	23	2.4	23	85	11	78	76	5	3	14	1.10
1711311--1711373	22	3.0	22	80	13	71	76	4	1	17	1.04
1711406--1711712	37	8.6	36	79	12	312	45	7	4	42	1.51
1711424--1711563	64	2.2	64	86	5	187	46	7	3	42	1.50
1711471--1711526	27	2.2	26	87	6	78	50	7	1	41	1.40
1711373--1711699	110	3.1	105	79	11	334	46	6	3	42	1.48
1711488--1711699	73	2.9	72	86	6	291	46	6	4	43	1.48
1711726--1711766	2	21.0	2	85	5	57	46	0	4	48	1.23
1712353--1713133	84	9.3	84	84	2	903	24	18	24	33	1.97
1713565--1713589	2	12.5	2	100	0	50	52	0	0	48	1.00
1713953--1714016	23	2.8	23	80	0	83	32	26	23	17	1.96
1714246--1714304	30	2.0	29	83	3	73	33	22	6	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1715471--1715632	64	2.5	63	81	7	184	24	24	17	32	1.97
1719102--1719165	23	2.8	23	79	6	85	34	25	23	17	1.96
1720601--1720658	20	2.6	22	89	10	84	25	22	20	31	1.98
1720646--1720807	64	2.5	63	81	7	193	25	25	17	31	1.97
1721585--1721861	84	3.3	84	86	3	387	24	19	22	33	1.97
1724421--1724455	9	3.8	9	88	7	52	48	0	0	51	1.00
1724441--1724486	23	2.0	24	86	4	67	50	6	2	41	1.40
1724429--1724552	39	3.3	39	74	21	122	49	4	2	43	1.37
1724475--1724565	39	2.3	41	83	7	116	49	5	3	41	1.42
1724438--1724668	102	2.3	99	82	11	288	47	6	3	43	1.44
1724530--1724590	27	2.4	25	86	10	79	45	6	4	42	1.51
1724530--1724590	25	2.3	27	86	10	83	45	6	4	42	1.51
1724552--1724693	37	3.8	37	83	11	148	45	8	3	42	1.51
1725001--1725113	59	1.9	59	83	7	149	30	14	17	38	1.89
1726854--1726946	16	5.8	16	88	0	114	46	31	16	6	1.72
1727385--1727444	30	2.0	30	90	0	93	38	16	20	25	1.93
1727425--1727539	31	3.7	31	75	1	86	36	27	11	24	1.90
1728254--1728280	2	13.5	2	100	0	54	48	0	0	51	1.00
1729111--1729159	2	24.5	2	100	0	98	51	0	0	48	1.00
1730309--1730368	23	2.6	22	80	12	68	18	25	21	35	1.96
1732575--1732658	32	2.6	32	90	0	123	17	23	29	28	1.97
1737983--1738025	2	21.5	2	100	0	86	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1739362--1739450	38	2.4	36	87	7	124	46	15	14	23	1.83
1740355--1740741	54	7.1	54	84	6	442	40	18	9	31	1.83
1740355--1740742	164	2.4	164	84	6	491	40	18	9	31	1.83
1742814--1742870	4	14.8	4	72	20	50	0	24	0	75	0.80
1744756--1744816	33	1.9	31	83	6	77	52	4	13	29	1.61
1750100--1750155	15	3.9	14	75	11	51	46	5	0	48	1.25
1754454--1754484	5	6.4	5	96	3	55	35	22	41	0	1.54
1754684--1754744	30	2.0	30	84	9	79	34	6	14	44	1.72
1754840--1754869	15	2.0	15	100	0	60	26	33	26	13	1.93
1754977--1755018	21	2.0	21	95	0	75	23	21	28	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15