Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007746.1 Hibiscus syriacus cultivar Beakdansim tig00110009_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3674400

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  15  of  15  ( 1700 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3639937--3640022
39
2.2
39
85
0
109
33
18
20
26
1.96
3640629--3640672
22
2.0
21
82
4
52
56
4
6
31
1.46
3641666--3641728
27
2.3
27
83
0
81
41
1
17
39
1.59
3643775--3644359
102
5.5
104
74
15
396
53
11
3
31
1.55
3644361--3644389
12
2.4
12
100
0
58
62
13
0
24
1.32
3643845--3644471
325
1.9
329
86
3
908
51
11
4
32
1.56
3644681--3644735
25
2.2
25
87
3
76
32
21
14
30
1.93
3646363--3646455
44
2.1
44
88
4
134
29
18
7
45
1.76
3648520--3648577
30
1.9
30
82
6
73
36
15
6
41
1.74
3649312--3650362
55
18.9
55
76
13
750
29
19
17
33
1.95
3649750--3649798
24
2.0
24
100
0
98
32
22
8
36
1.84
3650775--3650826
20
2.6
21
84
6
72
19
32
17
30
1.95
3651763--3651799
18
2.1
18
100
0
74
29
21
5
43
1.75
3656817--3657896
55
19.9
55
78
9
922
28
19
17
34
1.95
3656817--3657896
165
6.6
165
78
9
1027
28
19
17
34
1.95
3658311--3658362
20
2.6
20
81
6
61
17
30
15
36
1.91
3658777--3658861
33
2.5
33
87
10
120
25
5
0
68
1.12
3658781--3658861
32
2.5
32
86
11
103
27
4
0
67
1.10
3662820--3662857
17
2.2
18
86
9
53
71
2
5
21
1.19
3664953--3665007
27
2.0
27
89
7
83
32
0
36
30
1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15

The End!