genome.fa.s7746.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007746.1 Hibiscus syriacus cultivar Beakdansim tig00110009_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3674400

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  14  of  15  ( 1700 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3340760--3342839	303	6.9	304	98	0	3967	35	22	21	21	1.96
3343503--3343557	22	2.5	22	90	0	92	38	14	12	34	1.84
3343912--3344023	54	2.1	54	84	0	143	23	21	15	40	1.91
3346217--3346489	93	3.0	91	87	7	382	37	21	12	28	1.90
3355339--3355383	3	15.0	3	90	0	72	62	2	0	35	1.08
3358062--3358099	18	2.1	18	100	0	76	15	0	34	50	1.45
3359096--3359140	4	11.2	4	95	0	81	26	0	22	51	1.49
3361244--3361349	42	2.5	42	81	4	117	28	22	22	26	1.99
3361482--3361551	20	3.5	20	73	7	61	31	24	24	20	1.98
3361486--3361583	42	2.3	42	86	6	128	32	20	21	25	1.97
3361470--3362231	258	3.0	258	92	0	1231	33	18	16	31	1.94
3361749--3361855	42	2.6	41	83	2	142	30	22	21	25	1.99
3361241--3362231	516	1.9	505	89	3	1520	32	18	17	32	1.94
3364546--3364586	3	13.7	3	100	0	82	65	0	0	34	0.93
3364584--3370321	4	1452.8	4	96	3	10603	49	25	0	24	1.51
3370819--3370852	17	1.9	18	88	5	52	47	5	2	44	1.42
3370896--3370945	20	2.5	20	86	0	73	30	26	30	14	1.94
3370698--3371154	225	2.0	226	93	0	772	32	17	17	31	1.94
3371161--3371237	20	3.8	19	71	17	57	32	18	20	28	1.96
3376542--3377049	117	4.4	117	87	2	675	24	22	15	37	1.93
3377326--3377639	73	4.3	74	82	6	361	36	12	20	30	1.89
3377437--3377549	36	3.1	36	68	12	104	38	14	17	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3379064--3379165	14	7.3	14	74	14	86	1	21	0	76	0.88
3379054--3379153	41	2.4	41	84	12	132	1	22	0	77	0.84
3379078--3379166	27	3.4	27	81	14	82	2	20	0	77	0.87
3379054--3379153	42	2.4	41	84	12	132	1	22	0	77	0.84
3379054--3379151	7	14.1	7	78	11	78	1	21	0	77	0.83
3379054--3379160	11	9.5	11	69	23	64	0	21	0	77	0.82
3383296--3383357	21	3.0	20	74	21	56	62	6	8	22	1.45
3389557--3389596	21	1.9	21	89	0	62	35	15	15	35	1.88
3390097--3390534	144	3.0	146	74	7	406	39	13	10	36	1.79
3390145--3390582	145	3.0	143	74	8	402	39	13	10	36	1.79
3392424--3392464	16	2.5	17	80	11	50	39	39	9	12	1.76
3394870--3394995	51	2.5	50	82	7	137	37	17	0	45	1.49
3395627--3395657	15	2.1	15	93	0	53	29	0	22	48	1.51
3401455--3401534	23	3.7	22	83	9	94	18	26	31	23	1.98
3409648--3409688	21	1.9	22	85	5	57	39	26	17	17	1.91
3412031--3412066	19	1.9	19	94	5	65	47	11	22	19	1.80
3412213--3412282	37	1.9	37	82	8	90	50	2	1	45	1.25
3415303--3415340	20	1.9	19	89	5	58	68	2	2	26	1.16
3417577--3417627	26	2.0	26	88	0	75	54	7	15	21	1.66
3418839--3418882	23	1.9	23	85	0	61	15	11	0	72	1.11
3422815--3422870	24	2.4	24	85	8	71	67	14	8	8	1.40
3434244--3434282	21	1.9	21	84	5	53	33	15	12	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3440675--3440717	18	2.4	18	100	0	86	20	34	6	37	1.80
3443469--3444189	362	2.0	359	95	0	1298	34	16	17	31	1.93
3447053--3447095	22	1.9	22	85	4	59	23	0	11	65	1.25
3460865--3460904	15	2.7	16	77	14	50	47	5	15	32	1.66
3460967--3461005	19	1.9	19	85	10	51	58	2	5	33	1.33
3466131--3466168	20	1.9	20	88	0	58	31	31	15	21	1.94
3470332--3470357	12	2.2	12	100	0	52	42	7	34	15	1.75
3474617--3474697	24	3.5	24	70	20	75	22	24	23	29	1.99
3477372--3477409	20	1.9	20	94	0	67	31	34	15	18	1.92
3477432--3477519	46	1.9	46	90	2	142	27	26	20	26	1.99
3480014--3480066	23	2.5	21	77	16	56	52	0	1	45	1.11
3482037--3482166	3	45.0	3	72	7	99	56	6	1	34	1.35
3482118--3482206	37	2.4	35	80	14	92	53	7	3	34	1.46
3490967--3491042	23	3.6	19	85	13	62	31	14	7	46	1.73
3490976--3491055	23	3.5	23	98	0	151	30	16	10	43	1.80
3494271--3494300	5	6.0	5	100	0	60	60	0	20	20	1.37
3494554--3494617	22	2.9	22	78	0	74	12	20	25	42	1.87
3499783--3499816	14	2.4	14	100	0	68	44	23	5	26	1.76
3508452--3508503	3	17.3	3	100	0	104	67	0	0	32	0.91
3511512--3511607	20	4.8	20	83	2	122	39	23	15	20	1.91
3511412--3511610	20	10.0	20	73	10	113	35	23	14	26	1.94
3514824--3514859	18	2.0	18	94	0	63	55	25	0	19	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3520633--3520673	20	2.0	20	85	0	55	46	21	14	17	1.84
3520594--3520703	54	2.0	54	89	0	166	38	18	21	21	1.94
3520714--3520772	20	3.0	20	94	0	109	18	20	23	37	1.94
3520883--3520932	25	2.0	25	92	0	82	26	6	22	46	1.74
3521319--3521355	18	2.1	18	89	0	56	32	5	10	51	1.60
3521311--3521363	24	2.2	24	86	0	70	35	3	13	47	1.61
3521659--3521745	39	2.2	39	97	0	165	47	20	14	17	1.83
3521919--3521993	20	4.1	20	70	19	63	36	21	24	18	1.95
3522098--3522238	61	2.2	63	83	8	171	51	17	0	30	1.51
3523650--3523708	21	2.8	21	75	14	59	28	13	30	27	1.94
3523603--3523702	42	2.4	42	78	9	105	25	16	34	25	1.95
3525861--3525903	20	2.2	20	91	4	70	11	18	25	44	1.84
3525932--3525963	13	2.5	13	100	0	64	78	15	6	0	0.95
3526355--3526403	20	2.5	20	93	0	89	18	18	22	40	1.91
3526355--3526414	20	3.0	20	83	13	79	16	18	25	40	1.91
3526485--3526555	20	3.6	19	78	12	81	23	15	32	28	1.95
3528717--3528756	16	2.6	16	88	4	55	35	17	10	37	1.83
3529772--3529806	2	17.5	2	100	0	70	51	0	0	48	1.00
3543891--3544015	31	4.0	31	85	2	171	39	22	17	20	1.93
3546168--3546216	26	1.9	25	84	12	64	63	0	10	26	1.26
3547626--3547678	20	2.7	20	93	0	88	35	9	15	39	1.79
3549119--3549162	23	1.9	23	95	0	79	25	29	9	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3553849--3553922	21	3.5	21	75	12	62	18	1	12	67	1.29
3555677--3555717	5	8.2	5	88	0	64	21	19	14	43	1.87
3557960--3558107	76	2.0	75	87	4	217	29	3	10	56	1.48
3557987--3558134	75	2.0	76	87	4	219	28	2	10	58	1.46
3557987--3558136	76	2.0	76	88	5	223	28	2	10	58	1.46
3561746--3561793	24	2.0	24	95	0	87	35	12	10	41	1.77
3562476--3562517	17	2.5	17	96	0	75	19	9	7	64	1.46
3565056--3565120	16	4.1	15	86	4	85	81	0	10	7	0.87
3565056--3565120	24	2.8	23	82	15	80	81	0	10	7	0.87
3567424--3567483	31	1.9	32	89	3	95	60	15	18	6	1.56
3569657--3569686	13	2.4	13	94	5	53	43	0	30	26	1.55
3576150--3576183	16	2.1	16	94	0	59	32	38	11	17	1.86
3586357--3586425	26	2.6	27	90	9	115	49	5	5	39	1.51
3586513--3586678	2	85.5	2	76	12	132	48	8	1	42	1.41
3595845--3595952	2	54.0	2	88	0	162	0	55	0	44	0.99
3595845--3595952	32	3.4	32	97	0	198	0	55	0	44	0.99
3599796--3599821	8	3.2	8	100	0	52	11	34	0	53	1.37
3610062--3610116	20	2.8	19	72	22	51	36	5	21	36	1.77
3611476--3611613	64	2.1	64	82	9	163	33	21	17	28	1.96
3612630--3612654	2	12.5	2	100	0	50	52	0	0	48	1.00
3613859--3613967	31	3.5	31	70	7	94	33	19	15	31	1.93
3618483--3618607	31	4.0	32	72	13	98	32	18	18	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3623156--3623283	31	4.1	31	72	11	100	34	17	17	30	1.93
3624180--3624256	20	3.7	20	76	17	68	24	25	19	29	1.98
3625300--3625385	18	4.6	18	78	8	100	24	24	29	22	1.99
3626522--3626548	7	3.9	7	100	0	54	14	29	14	40	1.86
3630593--3630641	2	24.0	2	95	4	89	48	2	0	48	1.12
3632241--3632344	51	2.0	51	98	0	199	42	15	4	37	1.68
3633722--3633782	15	4.1	15	70	8	52	27	1	3	67	1.16
3633754--3633803	23	2.2	24	78	10	59	24	0	6	70	1.10
3637500--3637526	2	13.5	2	100	0	54	51	0	0	48	1.00
3638910--3638944	17	2.1	17	100	0	70	14	17	40	28	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15