Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007776.1 Hibiscus syriacus cultivar Beakdansim tig00110057_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2207776

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1243 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2090012--2090058
3
16.0
3
95
4
87
34
0
0
65
0.93
2091535--2091580
18
2.6
18
96
0
83
23
13
21
41
1.88
2097438--2097499
22
2.8
22
87
0
88
35
6
16
41
1.74
2098977--2099001
3
8.3
3
100
0
50
0
32
0
68
0.90
2099534--2099576
20
2.1
21
86
4
61
58
2
0
39
1.11
2101143--2101190
19
2.5
19
100
0
96
27
27
14
31
1.95
2105473--2105542
31
2.3
31
82
4
90
38
5
20
35
1.76
2113621--2113688
23
3.0
23
84
0
91
17
25
26
30
1.97
2113718--2113751
17
2.1
17
88
5
52
32
23
5
38
1.79
2114951--2115014
23
3.1
19
84
11
65
21
32
28
17
1.96
2114972--2115014
19
2.2
19
87
4
59
23
32
30
13
1.93
2137744--2137801
21
2.7
22
84
5
66
15
22
22
39
1.91
2138628--2138732
37
2.8
37
85
0
138
40
15
14
29
1.86
2139615--2140381
105
7.3
105
91
2
1130
21
18
26
33
1.96
2141099--2141168
22
3.2
22
91
0
122
24
12
25
37
1.91
2141794--2141856
21
3.0
21
76
19
67
1
14
3
80
0.90
2141803--2141856
8
6.4
8
79
12
63
1
14
1
81
0.86
2141803--2141856
17
3.2
16
80
12
63
1
14
1
81
0.86
2141780--2141860
26
3.0
27
82
12
87
2
14
3
79
0.98
2141781--2141860
9
8.9
9
71
15
67
2
13
3
80
0.96
2144838--2144942
37
2.8
37
85
0
138
29
14
15
40
1.86
2145771--2145805
17
2.1
17
94
0
61
25
25
5
42
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2146579--2146616
16
2.4
16
83
12
51
13
5
0
81
0.85
2146600--2146655
24
2.2
24
81
9
67
26
7
1
64
1.29
2146927--2147008
22
3.6
22
72
9
67
13
6
8
71
1.28
2151614--2151653
21
1.9
21
89
0
62
37
17
17
27
1.92
2155536--2155575
21
1.9
21
90
10
64
15
25
25
35
1.94
2155560--2155631
20
3.5
20
77
3
90
27
18
25
29
1.98
2157179--2157244
2
34.0
2
88
11
102
48
1
0
50
1.10
2161198--2161240
17
2.4
18
88
7
70
44
9
9
37
1.69
2164606--2164919
163
1.9
163
98
1
612
35
21
20
22
1.96
2178921--2178988
28
2.4
28
95
2
118
45
2
39
11
1.56
2184598--2184743
73
2.0
73
91
2
240
38
17
1
42
1.58
2186951--2187016
30
2.2
30
97
2
123
40
12
6
40
1.67
2189406--2189445
21
1.9
21
89
0
62
10
25
40
25
1.86
2189428--2189487
19
2.9
20
85
9
68
16
26
35
21
1.95
2193291--2193330
21
1.9
21
85
10
55
35
10
2
52
1.48
2195536--2195601
30
2.2
30
97
2
123
40
12
6
40
1.67
2195844--2196013
70
2.4
70
94
0
295
17
13
15
53
1.73
2196236--2196278
23
2.0
21
86
9
59
23
0
2
74
0.93
2201908--2201949
19
2.2
19
83
8
50
57
0
4
38
1.20
2202579--2202605
2
13.5
2
100
0
54
51
0
0
48
1.00
2203355--2203403
22
2.2
22
85
0
62
65
22
2
10
1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!