genome.fa.s7776.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007776.1 Hibiscus syriacus cultivar Beakdansim tig00110057_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2207776

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  6  of  11  ( 1243 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1152384--1152421	18	2.1	19	95	5	69	78	5	15	0	0.91
1155226--1155488	65	4.0	65	90	0	391	30	13	22	34	1.92
1155226--1155537	130	2.4	130	84	2	349	29	14	22	33	1.93
1156966--1157018	25	2.1	25	86	6	72	49	5	16	28	1.69
1162779--1162846	36	1.9	36	87	3	102	50	2	0	47	1.16
1163510--1163705	97	2.0	97	90	8	312	36	4	7	51	1.50
1163527--1163723	96	2.0	97	86	6	276	39	4	8	47	1.54
1163692--1163747	30	1.9	28	85	7	76	50	1	5	42	1.35
1165343--1165382	17	2.4	18	80	16	50	57	2	5	35	1.34
1169181--1169248	31	2.2	31	84	10	86	73	0	10	16	1.09
1169181--1169234	17	3.4	17	75	12	60	74	0	9	16	1.07
1169412--1169515	3	34.3	3	76	18	92	64	1	4	28	1.25
1169361--1169493	43	2.8	47	76	12	130	61	3	5	30	1.33
1171294--1171374	32	2.5	32	88	5	119	18	19	32	29	1.96
1172760--1172804	21	2.2	20	84	4	54	4	11	4	80	1.01
1180143--1180181	20	2.0	20	84	0	51	23	5	23	48	1.70
1180341--1180380	21	1.9	21	89	0	62	10	25	40	25	1.86
1180363--1180423	20	2.9	21	87	7	79	18	26	34	21	1.96
1189400--1189446	19	2.3	20	85	7	60	61	6	8	23	1.48
1192760--1192827	31	2.2	31	84	5	84	75	1	8	14	1.12
1192782--1192827	13	3.4	14	79	8	51	76	0	8	15	1.02
1192764--1192855	22	4.0	23	75	17	86	72	3	7	16	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1192775--1192852	35	2.2	37	82	11	92	73	2	7	16	1.18
1192775--1192855	9	9.1	9	68	21	55	72	2	7	17	1.18
1192935--1193067	43	2.9	44	77	17	121	60	3	6	30	1.35
1194458--1194936	240	2.0	240	98	0	922	39	10	14	35	1.80
1196029--1196096	35	1.9	35	85	5	93	70	5	5	17	1.28
1196377--1196402	3	8.7	3	100	0	52	65	0	0	34	0.93
1199787--1199819	16	2.1	16	88	5	50	9	9	0	81	0.87
1206713--1206757	21	2.1	21	95	0	81	11	26	20	42	1.85
1210585--1210672	3	30.3	3	93	6	155	65	0	0	34	0.93
1218037--1218237	102	2.0	100	87	3	289	27	16	16	38	1.91
1227206--1227231	2	13.0	2	100	0	52	50	0	0	50	1.00
1227800--1227854	21	2.6	21	97	0	101	32	27	25	14	1.95
1228204--1228238	3	11.7	3	93	0	61	31	0	37	31	1.58
1230541--1230585	19	2.5	17	82	13	54	73	0	8	17	1.08
1230686--1230746	26	2.3	26	97	2	113	75	0	0	24	0.80
1230693--1230747	8	6.6	8	91	8	92	76	0	0	23	0.79
1230910--1230943	17	1.9	18	94	5	61	61	5	5	26	1.42
1231465--1231566	37	2.8	37	87	0	132	31	13	14	40	1.85
1232318--1232941	106	5.9	106	89	1	876	23	18	24	33	1.97
1232868--1233004	63	2.2	63	95	0	247	24	16	27	30	1.97
1232754--1233110	169	2.1	169	92	1	590	22	18	25	33	1.97
1232647--1233216	275	2.1	275	91	0	906	23	18	24	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1232550--1233314	381	2.0	373	91	2	1224	23	18	24	33	1.97
1232923--1233574	106	6.2	106	87	4	903	22	18	24	34	1.96
1232923--1233574	204	3.1	204	86	5	856	22	18	24	34	1.96
1232963--1233543	310	1.9	310	92	0	982	22	18	24	35	1.96
1234505--1234559	22	2.5	22	96	0	101	23	12	25	38	1.90
1235141--1235191	14	3.8	13	75	12	50	1	11	5	80	0.97
1235154--1235201	11	4.6	10	80	10	51	0	12	6	81	0.87
1235143--1235199	20	2.8	20	81	10	62	1	12	7	78	1.01
1238589--1238625	19	1.9	19	89	10	58	67	0	24	8	1.17
1239790--1239834	19	2.5	17	82	13	54	73	0	8	17	1.08
1239916--1239974	18	2.9	20	81	18	61	69	0	3	27	1.04
1239931--1239973	10	4.2	10	82	11	52	72	0	2	25	0.97
1256423--1256484	25	2.5	26	84	5	83	66	3	8	22	1.33
1258101--1258826	123	5.9	122	87	4	876	26	18	15	40	1.90
1258101--1258814	247	2.9	244	86	3	913	25	19	14	40	1.89
1261536--1261574	13	2.9	14	84	7	53	2	15	0	82	0.79
1261516--1261586	8	8.6	8	77	11	72	2	15	0	81	0.80
1261516--1261586	27	2.9	24	76	13	72	2	15	0	81	0.80
1266355--1266416	26	2.5	26	86	5	92	66	3	8	22	1.33
1266396--1266489	45	2.1	45	80	7	102	59	5	12	22	1.53
1269818--1269857	18	2.2	18	90	0	62	50	7	0	42	1.30
1269992--1270072	30	2.8	28	81	7	81	37	6	4	51	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1270061--1270097	19	1.9	19	88	0	56	18	8	0	72	1.08
1280026--1280090	33	2.0	32	93	3	112	35	13	15	35	1.87
1281134--1281365	123	1.9	124	81	2	288	25	21	18	34	1.96
1283351--1283385	2	17.5	2	100	0	70	48	0	0	51	1.00
1283372--1283439	21	3.0	22	79	16	75	44	1	0	54	1.09
1283390--1283438	25	2.0	24	88	11	73	40	0	0	59	0.98
1290096--1290318	36	6.2	36	87	1	313	19	25	21	33	1.97
1297440--1297639	98	2.0	100	87	2	287	31	25	16	27	1.96
1303313--1303345	15	2.2	15	100	0	66	24	21	9	45	1.80
1306556--1306584	14	2.0	15	93	6	51	72	0	0	27	0.85
1306921--1307123	101	2.0	101	95	0	361	39	6	9	44	1.62
1308634--1308664	4	7.5	4	92	7	53	25	0	0	74	0.82
1313155--1313416	95	2.7	95	86	4	337	32	17	17	31	1.94
1314508--1314854	36	9.6	36	70	13	182	27	17	14	40	1.88
1314500--1314839	72	4.7	72	88	2	443	27	17	14	41	1.88
1314876--1315057	36	5.3	34	70	17	110	28	19	12	39	1.88
1314786--1315367	101	5.7	101	78	9	540	28	17	12	41	1.86
1315040--1315099	30	2.0	31	87	9	88	40	18	10	31	1.84
1315120--1315184	33	2.0	33	90	0	103	20	18	15	46	1.84
1314769--1315275	201	2.5	198	80	8	522	29	17	12	40	1.86
1315152--1315238	42	2.1	41	89	6	131	22	17	12	47	1.81
1315153--1315266	36	3.0	36	76	14	120	25	18	12	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1315323--1315468	67	2.2	66	86	6	195	32	19	13	35	1.90
1315430--1315538	37	3.0	36	90	5	175	44	16	11	28	1.82
1317336--1317373	20	1.9	20	88	0	58	15	13	2	68	1.32
1329230--1329273	3	15.0	3	81	13	56	29	0	2	68	1.02
1329230--1329268	17	2.2	18	95	4	71	28	0	0	71	0.86
1333016--1333077	32	2.0	32	93	3	108	12	14	11	61	1.57
1336357--1336390	4	9.0	4	87	12	54	50	26	0	23	1.50
1336353--1336398	22	2.1	21	92	4	74	50	23	2	23	1.61
1337059--1337154	35	2.7	35	80	6	115	34	17	12	35	1.88
1337483--1337551	30	2.3	30	92	2	113	37	8	14	39	1.77
1337703--1337927	120	1.9	120	81	7	278	30	14	12	42	1.83
1337824--1337949	65	2.0	64	90	1	198	32	14	10	42	1.79
1337931--1338009	40	2.0	39	97	2	149	30	22	12	34	1.92
1338605--1338685	28	2.9	28	87	7	103	24	14	14	45	1.83
1338699--1338991	40	6.8	43	76	15	200	24	34	19	21	1.96
1338745--1338998	134	1.9	134	92	0	427	24	35	18	20	1.95
1339011--1339122	43	2.7	40	73	6	109	25	25	18	30	1.98
1339283--1339332	3	17.0	3	88	12	77	30	0	0	70	0.88
1339277--1339332	23	2.4	24	90	3	78	28	1	1	67	1.10
1339283--1339332	23	2.1	23	96	3	91	30	0	0	70	0.88
1342486--1342532	3	15.7	3	100	0	94	34	0	0	65	0.93
1347958--1348011	20	2.7	20	88	0	81	25	16	35	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1350212--1350254	13	3.3	13	87	6	61	44	9	11	34	1.73
1350266--1350307	19	2.1	21	86	8	61	64	14	0	21	1.29
1350709--1350787	21	3.6	22	83	9	90	27	15	30	26	1.96
1353782--1353864	5	17.0	5	69	16	50	72	0	6	21	1.06
1353774--1353843	10	6.7	10	73	23	56	72	0	7	20	1.07
1353730--1353864	9	14.6	9	72	15	80	72	0	7	19	1.12
1353972--1354033	17	3.4	18	78	17	65	77	0	6	16	0.97
1353991--1354033	20	2.2	20	86	0	59	79	0	4	16	0.90
1354087--1354112	2	13.0	2	100	0	52	50	0	0	50	1.00
1354119--1354166	14	3.4	14	72	11	53	64	0	2	33	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11