genome.fa.s7776.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007776.1 Hibiscus syriacus cultivar Beakdansim tig00110057_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2207776

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1243 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430037--430104	29	2.3	29	77	18	70	51	1	1	45	1.19
432646--432679	17	1.9	18	88	5	52	26	5	2	64	1.30
435708--435738	3	10.3	3	100	0	62	67	0	0	32	0.91
446373--446429	28	2.0	28	86	0	78	33	15	14	36	1.88
450286--450339	28	1.9	28	96	0	99	38	27	11	22	1.88
455755--455794	19	2.2	18	91	8	64	77	5	12	5	1.09
456850--456996	32	4.6	32	78	5	154	31	16	19	33	1.94
457378--457745	60	6.0	59	75	11	312	37	19	16	27	1.92
457552--457793	64	3.7	65	81	6	258	39	21	13	25	1.90
458438--458592	63	2.5	62	85	5	204	29	21	17	31	1.96
458438--458612	63	2.7	62	78	11	185	28	22	17	31	1.97
467116--467238	63	1.9	63	88	6	185	30	21	18	29	1.97
468361--468475	40	2.9	40	90	2	178	23	33	17	25	1.96
469732--469800	30	2.3	29	83	11	79	20	13	11	55	1.68
470980--471011	16	2.0	16	100	0	64	31	12	18	37	1.88
475226--475302	29	2.7	29	85	0	100	27	5	22	45	1.73
475921--475961	19	2.1	20	86	4	57	24	4	29	41	1.75
480758--480930	90	1.9	90	93	0	301	45	7	12	35	1.70
490016--490058	10	4.2	10	90	3	59	9	11	18	60	1.57
490034--490069	17	2.2	16	90	5	54	8	5	22	63	1.43
490291--490439	64	2.3	64	79	8	178	27	16	24	31	1.96
491130--491158	13	2.1	14	93	6	51	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491130--491158	7	4.3	7	91	8	51	37	0	0	62	0.96
493867--493910	23	1.9	23	100	0	88	56	15	13	13	1.67
493867--493923	23	2.5	23	91	0	78	52	14	14	19	1.74
509719--509751	3	11.7	3	87	12	52	66	0	0	33	0.92
509933--510521	54	10.9	53	81	7	439	21	24	18	34	1.96
510181--510513	162	2.1	161	90	2	526	19	25	19	35	1.95
510521--510600	37	2.2	37	84	4	99	20	20	16	43	1.88
510912--510984	36	2.0	36	89	2	110	24	16	23	35	1.95
512218--512442	124	1.8	124	89	1	353	27	26	15	31	1.95
515720--515870	72	2.1	72	89	0	230	24	25	12	37	1.90
516554--516661	55	2.0	55	90	0	171	21	25	12	41	1.87
516964--517097	47	2.8	47	85	4	171	36	23	12	26	1.91
521136--521168	3	11.7	3	87	12	52	66	0	0	33	0.92
522129--522171	13	3.4	13	83	3	52	53	0	25	20	1.46
522113--522163	19	2.7	20	72	12	61	54	0	23	21	1.44
523000--523167	89	2.0	85	92	7	286	41	17	3	37	1.67
528625--528681	13	4.5	13	80	4	62	50	1	26	21	1.58
528629--528665	19	1.9	19	89	10	58	51	0	27	21	1.48
528711--528793	39	2.1	39	88	4	123	26	7	16	49	1.72
532831--532938	50	2.2	50	96	0	198	27	10	16	45	1.80
539984--540011	9	3.1	9	100	0	56	10	10	10	67	1.42
545468--545610	64	2.2	65	82	8	168	28	17	23	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
546063--546093	2	15.5	2	93	0	53	51	0	0	48	1.00
547248--547341	42	2.2	43	81	5	111	26	21	25	26	1.99
555367--555399	6	5.7	6	89	3	50	12	3	0	84	0.72
555355--555399	18	2.6	18	86	10	58	11	6	0	82	0.84
570258--570338	41	2.0	41	90	0	126	32	23	17	27	1.97
570203--570489	20	14.4	20	78	10	180	36	24	16	22	1.94
571009--571152	66	2.2	65	93	2	245	50	17	1	30	1.54
572473--572564	21	4.4	21	72	9	62	19	19	35	25	1.95
572493--572591	21	4.7	21	75	13	87	22	18	33	26	1.96
572473--572591	42	2.8	42	78	7	107	21	17	35	26	1.95
572543--572598	21	2.7	21	83	10	78	25	12	35	26	1.91
575282--575356	20	3.8	20	81	0	105	17	16	24	42	1.88
575282--575367	40	2.2	40	91	0	136	16	16	25	41	1.88
575282--575367	20	4.3	20	79	8	95	16	16	25	41	1.88
575361--575407	20	2.3	20	81	0	58	21	14	23	40	1.90
578274--578337	3	21.7	3	85	9	87	32	0	1	65	1.02
579491--579561	25	2.9	25	75	20	62	26	1	5	66	1.22
580291--580330	20	2.0	20	90	9	64	47	2	0	50	1.14
580326--580375	20	2.4	21	83	9	59	28	2	2	68	1.12
583654--583685	15	2.1	15	94	0	55	25	18	9	46	1.79
586884--586913	11	2.7	11	100	0	60	30	0	46	23	1.52
592076--592524	113	4.0	112	85	2	596	37	15	18	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592862--592920	3	19.7	3	86	6	84	33	0	0	66	0.92
595722--595769	21	2.2	22	85	11	71	54	10	6	29	1.59
595730--595769	21	1.9	21	100	0	80	55	10	7	27	1.60
596966--597004	20	2.0	20	90	10	62	35	10	5	48	1.59
599801--599835	3	11.7	3	88	11	54	31	0	2	65	1.07
604225--604790	81	7.0	81	90	0	891	27	23	11	37	1.90
604743--605195	68	6.8	68	85	5	595	30	24	14	30	1.94
604792--605183	196	2.0	195	89	2	599	30	24	13	30	1.94
605564--605736	59	3.0	58	84	5	231	35	19	12	32	1.89
606077--606259	100	1.9	95	82	5	231	28	21	15	33	1.95
613501--613618	61	1.9	61	85	0	164	28	28	13	28	1.94
615051--615096	19	2.4	19	100	0	92	32	30	0	36	1.58
618857--618903	22	2.1	22	96	0	85	23	21	21	34	1.97
619021--619066	19	2.4	19	78	7	58	52	13	6	28	1.65
619178--619276	30	3.3	28	78	10	99	59	7	13	20	1.57
619190--619302	60	1.9	60	85	5	158	58	7	12	22	1.58
619194--619278	30	2.8	30	85	0	125	58	5	11	23	1.55
619202--619297	30	3.2	30	79	8	106	59	7	10	22	1.55
621719--621762	19	2.3	19	100	0	88	15	20	31	31	1.94
630569--630614	19	2.3	20	81	7	58	23	17	6	52	1.68
632055--632208	65	2.4	65	85	4	195	29	20	21	27	1.98
632766--632884	63	1.9	60	86	5	166	45	15	13	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632966--633034	36	1.9	36	85	2	95	30	14	17	37	1.90
634405--634437	2	16.5	2	93	0	57	48	3	0	48	1.17
640311--640344	12	2.8	12	100	0	68	26	17	29	26	1.98
642353--642407	23	2.5	22	79	5	67	29	18	16	36	1.92
643053--643077	12	2.1	12	100	0	50	32	44	16	8	1.76
643452--643481	15	2.0	15	93	0	51	33	10	26	30	1.89
644774--644816	20	2.2	20	87	4	61	37	2	4	55	1.33
647309--647432	30	4.2	30	75	12	105	57	7	15	20	1.62
647309--647420	57	2.0	57	83	3	145	58	7	14	19	1.58
649311--649341	15	2.1	15	100	0	62	19	48	0	32	1.49
653292--653377	43	2.0	44	95	2	156	33	8	12	45	1.72
654489--654536	25	1.9	25	91	0	78	52	0	12	35	1.40
660182--660274	39	2.4	39	98	1	179	32	6	24	36	1.81
660493--660614	58	2.1	59	81	7	142	34	10	14	40	1.81
668297--668341	18	2.5	18	100	0	90	31	22	13	33	1.92
670164--670228	19	3.4	19	83	8	71	40	15	3	41	1.63
698542--698682	75	1.9	75	92	0	237	24	15	27	31	1.96
699089--699141	28	1.9	27	85	11	72	41	24	0	33	1.55
702683--702722	17	2.4	17	100	0	80	50	10	5	35	1.58
708980--709004	2	12.5	2	100	0	50	48	0	0	52	1.00
710928--711009	27	3.0	27	96	0	155	26	10	18	43	1.83
712114--712159	23	2.0	24	86	4	67	23	23	28	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
713152--713183	16	2.0	16	100	0	64	43	18	6	31	1.75
713453--713477	11	2.3	11	100	0	50	40	8	8	44	1.63
713347--713823	38	13.1	36	83	10	451	45	3	6	44	1.46
713842--713892	3	17.3	3	84	11	61	27	1	0	70	0.98
713855--713902	14	3.3	14	85	8	60	20	4	0	75	0.97
714713--714742	2	15.0	2	100	0	60	50	0	0	50	1.00
716051--716076	4	6.5	4	100	0	52	23	0	0	76	0.78
716051--716101	16	3.1	16	78	10	50	27	1	0	70	0.98
716110--716192	8	10.0	8	75	18	64	15	2	2	79	0.94
716108--716193	21	4.1	21	70	14	70	17	2	2	77	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11