genome.fa.s7776.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007776.1 Hibiscus syriacus cultivar Beakdansim tig00110057_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2207776

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  8  of  11  ( 1243 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1515918--1516138	64	3.5	64	86	2	257	27	18	19	34	1.95
1521575--1521630	27	2.0	28	96	3	105	33	3	16	46	1.64
1523034--1523079	20	2.4	19	89	7	67	34	23	17	23	1.96
1524420--1524470	24	2.1	24	100	0	102	45	7	15	31	1.75
1525431--1525472	19	2.2	19	86	0	57	80	2	4	11	0.95
1525581--1525634	22	2.5	23	73	11	60	55	0	1	42	1.10
1526377--1526443	23	2.9	23	93	0	116	11	17	14	55	1.69
1531411--1531443	12	2.6	13	80	9	50	30	15	9	45	1.77
1534168--1534236	23	3.0	23	89	0	102	26	26	27	20	1.99
1546410--1546515	42	2.5	42	85	0	158	22	17	22	36	1.95
1546492--1546534	19	2.3	19	95	0	77	18	20	30	30	1.97
1547309--1547347	5	8.0	5	97	2	71	0	41	20	38	1.53
1547350--1547412	6	10.5	6	98	0	108	0	15	53	30	1.42
1547505--1547869	42	8.7	42	90	3	549	35	23	19	21	1.96
1547803--1547869	19	3.3	19	76	12	71	37	20	20	20	1.95
1547865--1547917	21	2.5	21	87	0	70	16	18	30	33	1.94
1548267--1548314	20	2.4	20	82	6	62	39	14	10	35	1.80
1548404--1548560	50	3.1	49	65	21	124	43	18	14	24	1.87
1548318--1548560	103	2.3	103	89	2	353	43	18	14	24	1.87
1548484--1548639	79	2.0	79	96	2	287	43	17	14	24	1.86
1548561--1548779	103	2.1	103	96	0	402	41	18	15	23	1.89
1548379--1548742	182	2.0	182	93	1	631	42	18	15	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1549050--1549086	14	2.6	14	100	0	74	29	27	18	24	1.98
1549888--1549931	20	2.3	19	81	11	54	34	4	0	61	1.16
1553514--1553547	16	2.1	16	100	0	68	50	14	5	29	1.67
1558417--1558912	43	11.6	41	80	8	460	33	21	22	23	1.97
1558417--1558910	84	5.8	82	81	6	488	33	21	22	23	1.97
1559412--1559466	20	2.8	20	86	10	85	54	5	9	30	1.54
1562152--1562183	6	5.5	6	96	3	57	71	12	0	15	1.14
1562443--1562706	41	6.4	41	82	4	309	36	18	18	26	1.94
1562432--1562665	124	1.9	125	89	0	362	38	17	17	26	1.92
1562443--1562742	124	2.4	122	82	9	333	35	18	19	27	1.95
1567114--1567160	15	3.1	15	100	0	94	34	31	19	14	1.92
1567305--1567351	12	3.9	12	94	0	76	38	23	2	36	1.67
1567660--1567836	64	2.8	63	83	5	196	25	20	21	32	1.98
1567723--1567884	64	2.5	63	85	7	195	27	22	18	31	1.97
1571786--1572261	236	2.0	236	98	0	916	28	20	22	28	1.98
1576881--1576921	17	2.6	16	88	7	57	78	2	2	17	0.98
1588303--1588339	2	18.5	2	100	0	74	51	0	0	48	1.00
1588492--1588538	22	2.1	22	100	0	94	34	19	25	21	1.96
1594129--1594167	18	2.2	18	85	0	51	58	12	0	28	1.34
1596597--1596627	16	1.9	16	100	0	62	25	25	25	22	2.00
1607189--1607242	21	2.6	21	93	0	90	35	25	12	25	1.92
1607977--1608036	23	2.6	23	83	0	75	18	25	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1609082--1609237	21	7.1	20	73	14	96	21	21	21	35	1.96
1609118--1609174	29	2.0	29	92	0	96	19	21	24	35	1.96
1609147--1609245	42	2.4	42	87	0	144	24	22	20	33	1.97
1609085--1609219	71	1.9	71	87	3	200	21	21	21	35	1.96
1609578--1609645	25	2.8	25	95	4	122	39	11	17	30	1.86
1610286--1610357	21	3.4	21	82	0	81	36	18	20	25	1.95
1610300--1610358	21	2.8	21	84	0	82	37	16	22	23	1.94
1616644--1616769	60	2.1	61	82	11	154	32	11	12	43	1.78
1620378--1620489	37	3.0	36	85	7	136	39	7	4	49	1.51
1620637--1620661	8	3.1	8	100	0	50	76	0	0	24	0.80
1620873--1620898	2	13.0	2	100	0	52	50	0	0	50	1.00
1624960--1625000	8	5.2	8	82	5	57	34	0	29	36	1.58
1625083--1625687	128	4.7	128	95	0	1084	20	23	21	34	1.97
1626083--1626189	34	3.1	34	87	0	151	37	3	3	55	1.36
1626710--1626803	21	4.5	21	89	5	127	23	27	30	18	1.97
1626807--1626854	21	2.3	21	88	0	69	22	12	39	25	1.89
1628580--1628691	35	3.2	35	79	16	101	62	3	0	33	1.12
1629524--1629989	227	2.1	224	87	8	660	28	12	18	40	1.87
1635102--1635139	19	2.0	20	85	15	53	63	0	18	18	1.32
1635067--1635436	156	2.4	153	85	5	478	47	4	18	28	1.69
1639547--1639584	12	2.8	14	84	15	53	31	0	0	68	0.90
1642160--1642195	2	18.0	2	94	0	63	50	0	47	2	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1642610--1642654	15	3.0	15	93	0	72	55	2	0	42	1.12
1642588--1642630	21	2.0	21	90	0	68	44	2	0	53	1.13
1642642--1642742	22	4.5	22	71	7	94	37	0	10	51	1.37
1642660--1642697	14	2.6	14	91	4	58	36	0	5	57	1.21
1642675--1642774	32	3.4	32	73	25	121	35	0	11	54	1.36
1642675--1644887	54	40.4	54	69	19	1042	33	0	13	52	1.43
1642745--1642813	22	3.1	22	89	4	70	33	0	13	53	1.39
1642675--1643364	80	8.6	80	76	17	446	34	0	13	52	1.41
1642807--1642934	40	3.2	40	67	30	119	33	0	13	53	1.40
1642936--1642978	22	2.0	22	100	0	86	34	0	13	51	1.42
1642824--1644790	134	14.4	134	70	19	759	33	0	14	52	1.43
1642878--1644823	112	17.7	109	74	14	1055	33	0	14	52	1.43
1642990--1643032	22	2.0	22	100	0	86	34	0	13	51	1.42
1643124--1643166	22	2.0	22	100	0	86	34	0	13	51	1.42
1643204--1643246	22	2.0	22	90	0	68	34	0	16	48	1.46
1643012--1644790	80	21.6	82	76	15	778	33	0	14	52	1.43
1643447--1643503	18	3.4	18	69	18	59	33	0	10	56	1.34
1643728--1643770	22	2.0	22	100	0	86	34	0	13	51	1.42
1643782--1643824	22	2.0	22	100	0	86	34	0	13	51	1.42
1643996--1644038	22	2.0	22	95	0	77	32	0	16	51	1.45
1644328--1644370	22	2.0	22	90	0	68	34	0	13	51	1.42
1644547--1644632	32	2.7	32	92	0	145	31	0	13	54	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1644571--1644627	18	3.4	18	72	18	59	29	0	14	56	1.39
1644603--1644676	22	3.2	23	72	14	62	29	0	16	54	1.43
1644739--1644855	32	3.7	32	83	11	168	32	0	13	53	1.40
1644835--1644877	22	2.0	22	95	0	77	37	0	11	51	1.39
1644902--1644960	31	1.9	31	92	0	100	42	10	6	40	1.65
1647240--1647395	65	2.4	65	87	5	219	26	21	19	32	1.97
1653160--1653265	44	2.4	44	90	3	160	31	20	16	31	1.95
1653759--1653802	13	3.3	13	77	3	52	36	11	9	43	1.72
1655920--1656075	65	2.4	65	81	7	167	25	25	18	30	1.98
1657879--1657911	2	16.5	2	100	0	66	51	0	0	48	1.00
1660012--1660036	13	1.9	13	100	0	50	48	12	0	40	1.40
1660092--1660168	23	3.3	23	98	1	145	41	0	9	49	1.34
1661176--1661323	66	2.2	66	100	0	296	39	16	12	31	1.86
1662052--1662196	73	2.0	72	91	1	236	29	14	20	35	1.92
1662408--1662451	12	3.8	12	78	6	54	9	15	38	36	1.80
1662408--1662457	23	2.1	24	85	10	68	8	14	40	38	1.75
1662425--1662482	18	3.2	18	85	2	62	10	6	39	43	1.66
1662448--1662483	19	1.9	18	94	5	63	11	0	38	50	1.38
1663210--1663260	17	2.7	19	74	25	54	45	1	0	52	1.12
1663180--1663285	43	2.5	42	82	11	112	45	1	1	50	1.23
1663274--1663351	31	2.5	31	89	4	113	52	2	2	42	1.28
1663281--1663327	24	1.9	25	82	4	60	55	4	2	38	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1663208--1663351	16	9.0	15	68	22	71	47	2	2	47	1.28
1663205--1663409	31	6.1	35	68	20	88	45	2	3	47	1.36
1663313--1663473	87	1.8	88	81	6	202	43	6	5	44	1.54
1663442--1663517	36	2.1	36	87	0	107	47	7	1	43	1.40
1663492--1663549	15	3.8	15	73	13	55	50	3	3	43	1.36
1663484--1663636	57	2.8	54	83	5	166	47	7	5	40	1.54
1663689--1663722	15	2.4	14	90	5	50	41	5	8	44	1.60
1663636--1663787	57	2.6	58	81	11	186	40	9	9	40	1.69
1664000--1664065	17	3.8	17	74	20	64	40	3	7	48	1.47
1664000--1664041	21	2.0	21	95	0	75	42	0	7	50	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11