genome.fa.s7805.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007805.1 Hibiscus syriacus cultivar Beakdansim tig00110123_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2708727

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1278 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2562237--2562459	80	2.8	80	95	1	394	34	13	20	30	1.92
2564035--2564076	22	1.9	22	85	0	57	19	4	7	69	1.31
2564114--2564145	14	2.4	13	90	10	55	31	0	0	68	0.90
2564152--2564186	16	2.2	16	95	5	63	0	25	0	74	0.82
2567323--2567382	13	5.0	12	76	13	54	80	5	11	3	1.00
2568477--2568601	32	3.9	32	94	1	205	26	15	25	32	1.95
2569238--2569555	106	3.0	106	91	0	519	35	23	18	22	1.96
2569861--2570056	65	3.0	64	81	3	214	31	20	10	37	1.86
2569859--2570292	130	3.3	129	69	15	341	31	19	11	37	1.88
2569705--2570292	262	2.2	262	88	3	871	30	18	12	38	1.87
2571574--2571610	17	2.2	17	90	4	58	18	8	0	72	1.08
2571658--2571705	3	16.3	3	91	4	80	33	2	0	64	1.05
2580890--2580916	14	1.9	14	100	0	54	48	7	0	44	1.31
2581029--2581076	21	2.1	23	85	14	64	64	4	0	31	1.12
2581270--2581304	14	2.5	14	100	0	70	5	25	54	14	1.62
2582775--2582843	34	2.0	34	83	5	86	40	14	20	24	1.90
2582817--2582976	65	2.5	65	89	2	241	41	10	20	28	1.84
2582789--2583192	36	11.7	35	76	15	319	41	10	20	27	1.85
2582958--2583010	17	3.0	19	63	21	51	47	7	20	24	1.76
2582935--2583192	72	3.6	71	87	3	383	40	10	20	28	1.86
2583067--2583162	19	5.3	19	66	26	73	44	6	19	29	1.75
2582935--2583193	108	2.4	108	92	1	414	40	10	20	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2588680--2588732	21	2.5	21	90	0	79	28	28	22	20	1.99
2588741--2588877	21	6.6	21	72	9	120	21	19	23	35	1.96
2588747--2588868	61	2.0	60	81	9	140	22	18	22	35	1.96
2588827--2588898	21	3.4	21	74	14	85	20	18	20	40	1.92
2588766--2588905	42	3.4	42	91	2	212	23	18	21	36	1.95
2588995--2589019	6	4.2	6	100	0	50	36	48	16	0	1.46
2589503--2589533	5	6.4	5	96	3	55	0	41	22	35	1.54
2589653--2589927	42	6.5	42	89	0	397	38	22	18	20	1.94
2590354--2590413	2	30.0	2	96	0	111	50	1	0	48	1.11
2592184--2592252	2	34.5	2	100	0	138	50	0	49	0	1.00
2594389--2594442	20	2.8	20	94	2	92	37	18	14	29	1.91
2596939--2597001	33	1.9	33	83	6	83	23	7	11	57	1.60
2596950--2597015	34	1.9	34	81	6	80	22	10	13	53	1.71
2600528--2600595	28	2.5	28	87	2	93	14	14	26	44	1.84
2600545--2600607	28	2.2	28	88	5	92	17	15	30	36	1.91
2600753--2600805	2	27.0	2	92	3	90	49	0	1	49	1.12
2601352--2601378	2	13.5	2	100	0	54	51	0	0	48	1.00
2610211--2610251	20	2.2	20	91	8	68	43	14	7	34	1.73
2619718--2619754	19	1.9	19	88	0	56	62	8	8	21	1.49
2626409--2626467	21	2.8	21	82	7	57	28	0	18	52	1.46
2626549--2626577	14	2.1	14	100	0	58	31	20	20	27	1.98
2628678--2628705	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2628992--2629040	20	2.5	20	86	0	71	30	20	8	40	1.81
2636114--2636200	38	2.3	39	90	4	133	49	4	8	37	1.53
2636236--2636288	11	4.8	11	74	6	54	47	1	1	49	1.23
2636923--2636958	2	18.0	2	100	0	72	50	0	0	50	1.00
2640954--2641007	3	17.7	3	84	3	72	62	0	1	35	1.06
2641208--2641675	111	4.2	111	88	3	629	30	16	22	30	1.96
2641274--2641675	220	1.8	222	90	1	646	29	17	22	29	1.97
2641606--2642318	66	10.8	66	95	0	1259	32	17	20	30	1.95
2643484--2643559	23	3.3	21	75	15	62	7	21	0	71	1.11
2643523--2643558	12	2.7	14	83	16	58	13	19	0	66	1.24
2647081--2647134	21	2.5	21	77	19	58	72	0	7	20	1.08
2656864--2656932	3	22.7	3	79	2	75	59	0	1	39	1.06
2664646--2664715	31	2.4	29	79	11	72	57	4	10	28	1.50
2664810--2664990	18	9.7	18	68	22	83	48	4	2	45	1.35
2664841--2665033	100	2.0	95	90	5	305	46	4	4	44	1.43
2665009--2665053	13	3.3	13	87	6	63	48	6	2	42	1.41
2664859--2665116	28	9.5	27	65	24	82	47	4	4	44	1.42
2665026--2665073	24	2.0	25	87	4	71	52	4	4	39	1.40
2665026--2665178	75	2.0	75	87	2	218	48	2	4	44	1.37
2665551--2665609	7	8.4	7	88	0	82	18	0	33	47	1.49
2665945--2665977	2	16.5	2	100	0	66	51	0	0	48	1.00
2666372--2666400	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2666510--2666554	20	2.3	20	92	3	74	44	0	31	24	1.54
2666510--2666564	19	2.9	19	86	7	76	45	0	27	27	1.54
2667027--2667075	23	2.1	23	85	7	64	42	4	0	53	1.20
2667334--2667380	16	3.1	15	84	12	60	44	10	23	21	1.83
2672636--2672676	23	1.9	22	85	14	59	43	14	0	41	1.45
2672758--2672797	21	1.9	21	94	0	71	12	0	32	55	1.38
2672972--2672996	2	12.5	2	100	0	50	52	0	0	48	1.00
2673740--2673778	17	2.3	17	82	13	53	41	0	0	58	0.98
2694973--2695018	20	2.3	20	100	0	92	23	30	34	10	1.89
2696049--2696102	22	2.4	22	82	17	67	51	11	5	31	1.60
2702852--2702896	24	1.9	23	82	13	56	24	2	24	48	1.62
2705332--2705366	4	8.8	4	93	0	61	54	0	22	22	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!