genome.fa.s7805.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007805.1 Hibiscus syriacus cultivar Beakdansim tig00110123_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2708727

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  7  of  11  ( 1278 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1721630--1721894	95	2.7	98	84	6	344	31	16	16	34	1.92
1731357--1731522	90	1.9	88	93	3	280	36	11	7	45	1.68
1734331--1734360	3	10.3	3	92	7	53	70	0	0	30	0.88
1735209--1735246	20	1.9	20	88	0	58	15	15	23	44	1.85
1735736--1736201	183	2.5	184	94	1	810	25	17	17	39	1.91
1737540--1737762	119	1.9	119	81	1	277	37	11	8	42	1.73
1742476--1742533	3	19.3	3	100	0	116	67	0	0	32	0.91
1747516--1747983	55	8.5	55	90	0	652	36	16	16	29	1.92
1758877--1758966	36	2.5	36	85	8	114	70	0	4	25	1.06
1759010--1759047	18	2.1	18	90	9	60	73	0	5	21	1.02
1759716--1759830	25	4.6	24	66	17	72	58	14	0	26	1.43
1759716--1759842	44	3.2	44	67	28	136	59	13	1	25	1.43
1759635--1759845	76	2.9	76	88	5	301	56	12	1	28	1.45
1768231--1768396	85	2.0	85	80	7	194	32	16	19	31	1.94
1768375--1768432	13	4.5	13	84	0	80	32	18	18	29	1.96
1768368--1768432	26	2.5	26	84	0	76	33	16	20	29	1.95
1768913--1768946	17	2.1	16	88	5	50	76	0	8	14	1.01
1772745--1772816	26	2.7	27	83	8	78	66	0	18	15	1.25
1779142--1779175	17	2.1	16	88	5	50	76	0	8	14	1.01
1787031--1787073	20	2.2	19	87	4	59	30	0	37	32	1.58
1787524--1787548	6	4.2	6	100	0	50	36	48	16	0	1.46
1787538--1787900	185	2.0	176	94	5	629	31	28	22	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1798424--1799215	179	4.4	176	78	8	671	33	14	9	42	1.78
1798552--1799206	364	1.8	354	83	7	856	34	14	8	42	1.76
1799471--1799544	37	2.0	37	82	10	89	48	4	1	45	1.29
1805254--1805297	21	2.1	21	87	4	63	59	4	4	31	1.38
1805793--1805831	14	2.8	14	84	0	51	35	28	12	23	1.91
1807985--1808071	32	2.7	31	80	5	93	20	13	28	36	1.91
1809368--1809394	2	13.5	2	100	0	54	48	0	0	51	1.00
1809826--1809871	21	2.2	20	84	3	56	63	0	2	34	1.07
1816820--1816865	17	2.8	16	81	18	51	63	0	0	36	0.95
1816941--1817000	29	2.1	29	84	6	77	53	1	1	43	1.20
1817016--1817050	16	2.2	16	90	5	54	60	0	2	37	1.12
1817879--1817922	3	14.7	3	100	0	88	31	0	0	68	0.90
1818510--1819345	446	1.9	447	87	3	1243	33	16	13	36	1.88
1820135--1820204	31	2.3	31	95	5	124	42	17	14	25	1.86
1825614--1825687	35	2.1	36	92	2	123	33	12	16	37	1.85
1826569--1826745	95	1.9	95	89	0	273	28	16	17	37	1.92
1826713--1826781	33	2.1	33	86	0	93	27	13	17	42	1.86
1827478--1827532	20	2.6	21	88	8	85	45	16	14	23	1.84
1832282--1832320	2	19.5	2	100	0	78	51	0	0	48	1.00
1832288--1832349	22	2.9	21	81	15	58	48	3	0	48	1.17
1833053--1833141	26	3.4	26	90	0	151	23	20	30	25	1.98
1833366--1833414	25	1.9	26	83	4	64	16	6	6	71	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1836930--1836961	14	2.4	14	94	5	57	12	9	0	78	0.97
1839675--1839723	25	1.9	26	87	4	73	14	10	6	69	1.35
1841597--1841639	18	2.5	18	88	7	63	18	2	2	76	1.00
1842005--1842057	23	2.3	23	84	9	72	43	0	3	52	1.19
1843718--1843752	18	1.9	19	88	11	56	37	0	11	51	1.38
1845592--1845923	164	2.0	167	97	2	634	39	19	9	31	1.84
1846913--1846950	15	2.5	15	95	0	67	28	31	23	15	1.96
1846943--1846973	15	2.1	15	93	0	53	35	22	12	29	1.91
1848271--1848308	19	2.0	19	100	0	76	36	10	21	31	1.87
1850417--1850622	102	2.0	103	99	0	405	25	21	9	43	1.83
1851749--1852037	144	2.0	144	100	0	578	22	16	28	31	1.96
1853690--1853730	13	3.2	13	85	0	55	58	0	0	41	0.98
1853695--1853737	13	3.1	14	80	10	52	51	2	0	46	1.13
1855131--1855170	21	1.9	21	84	0	53	50	22	0	27	1.50
1855131--1855198	28	2.4	28	80	11	77	50	25	0	25	1.50
1855297--1855335	21	1.9	20	89	5	60	51	28	0	20	1.48
1855296--1855355	14	4.4	13	79	10	59	48	30	0	21	1.51
1855072--1855413	172	2.0	172	81	5	397	44	21	6	28	1.76
1856740--1856782	12	3.7	12	96	3	79	34	16	25	23	1.95
1856739--1856808	23	3.0	23	81	10	88	34	18	22	24	1.96
1856858--1856918	31	2.0	31	83	0	77	21	9	19	49	1.77
1857361--1857475	29	3.9	29	70	8	81	40	10	2	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1857422--1857478	28	2.1	28	83	3	71	40	7	3	49	1.47
1858376--1858485	5	21.8	5	69	14	66	74	0	4	20	1.04
1858376--1858453	35	2.2	35	82	8	88	75	1	5	17	1.05
1858370--1858487	46	2.6	44	82	11	125	75	0	4	19	1.02
1858653--1858690	17	2.2	18	86	9	53	78	0	7	13	0.94
1858697--1858721	7	3.6	7	100	0	50	88	0	0	12	0.53
1858765--1858814	3	16.7	3	80	15	59	66	0	0	34	0.92
1861644--1861701	14	4.1	14	75	24	50	1	20	0	77	0.86
1861649--1861701	18	2.7	19	83	16	65	0	18	0	81	0.70
1861680--1861793	59	2.0	57	81	10	133	14	24	10	50	1.73
1862782--1862813	15	2.1	15	94	0	55	0	15	0	84	0.63
1862777--1862821	14	3.1	14	81	6	54	0	15	0	84	0.62
1862800--1862913	59	1.9	59	85	5	160	11	23	13	51	1.73
1863896--1863935	8	5.2	8	94	5	66	0	10	0	90	0.47
1863886--1863935	21	2.4	21	87	9	68	2	12	0	86	0.67
1863914--1864027	59	1.9	59	87	1	167	11	22	13	52	1.72
1873553--1873597	23	1.9	23	90	4	72	73	6	0	20	1.05
1873570--1873631	17	3.8	16	72	12	54	75	1	6	16	1.08
1873852--1873889	17	2.4	16	86	8	51	84	2	2	10	0.83
1873955--1874048	3	30.7	3	91	4	152	69	0	0	30	0.89
1881896--1881940	22	2.1	21	91	4	72	42	0	11	46	1.39
1881917--1882038	39	3.2	37	78	16	115	44	4	10	40	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1881943--1882038	39	2.5	39	91	5	151	44	5	10	39	1.61
1883067--1883111	20	2.2	21	84	4	56	24	6	0	68	1.13
1883079--1883126	15	3.2	15	82	8	53	18	4	2	75	1.07
1884136--1884175	15	2.7	15	96	3	73	20	0	10	70	1.16
1886833--1886895	24	2.6	24	79	0	81	36	25	12	25	1.91
1906251--1906317	23	2.9	23	84	4	64	32	25	22	19	1.97
1908487--1908534	22	2.2	22	88	3	80	41	0	12	45	1.42
1908509--1908736	36	6.3	36	76	13	202	45	4	8	41	1.55
1908725--1908781	22	2.5	24	80	16	75	47	0	5	47	1.24
1908749--1908808	29	2.2	26	85	8	84	45	0	6	48	1.29
1908814--1908885	16	4.6	16	76	20	80	33	0	1	65	1.02
1908814--1908900	19	4.8	18	78	17	74	35	0	1	63	1.02
1908825--1908901	3	25.7	3	73	19	54	36	0	1	62	1.04
1908816--1908888	26	2.8	26	81	10	94	32	0	1	65	1.01
1912603--1912644	13	3.5	13	75	24	56	40	9	35	14	1.78
1912603--1912654	22	2.4	22	100	0	104	40	7	36	15	1.76
1916437--1916480	20	2.2	20	83	0	52	27	25	13	34	1.93
1916472--1916530	22	2.7	22	89	7	93	30	27	15	27	1.96
1916835--1916884	20	2.5	20	77	6	57	34	10	24	32	1.88
1916601--1916983	93	4.0	93	86	5	498	28	13	24	34	1.93
1916914--1916960	21	2.2	21	96	0	85	17	14	31	36	1.90
1916601--1916983	192	2.0	188	85	8	522	28	13	24	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1916922--1916967	21	2.2	21	88	0	65	21	13	28	36	1.91
1921040--1921068	8	3.8	8	90	9	51	0	62	0	37	0.96
1921040--1921068	15	1.9	15	100	0	58	0	62	0	37	0.96
1923066--1923130	33	2.0	33	90	6	105	26	29	13	30	1.94
1924113--1924152	21	1.9	21	85	10	55	77	0	22	0	0.77
1929350--1929389	21	1.9	21	89	0	62	10	25	40	25	1.86
1929370--1929432	20	2.9	21	79	9	65	15	25	34	23	1.95
1943240--1943264	9	2.8	9	100	0	50	80	0	12	8	0.92
1944151--1944189	21	1.9	21	89	5	62	25	10	5	58	1.51
1947094--1947184	33	2.8	33	81	6	112	28	24	14	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11