genome.fa.s7805.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007805.1 Hibiscus syriacus cultivar Beakdansim tig00110123_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2708727

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1278 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309076--309108	16	2.0	17	94	5	59	21	36	12	30	1.90
312237--312300	3	21.0	3	87	3	65	62	1	4	31	1.25
318684--318716	12	2.8	12	100	0	66	15	0	48	36	1.45
319000--319084	23	3.8	22	76	6	80	18	23	31	25	1.97
322889--323106	115	1.9	116	83	6	282	27	14	9	49	1.73
325215--325241	14	1.9	14	100	0	54	59	0	3	37	1.15
326897--326967	27	2.7	27	82	8	85	4	29	26	39	1.75
327003--327032	3	10.0	3	100	0	60	66	0	0	33	0.92
332363--332392	15	2.0	15	93	0	51	16	46	23	13	1.82
363093--363161	27	2.7	25	76	8	75	36	30	28	4	1.77
371184--371268	23	3.7	22	87	6	100	21	32	27	18	1.97
371227--371292	23	2.9	22	84	4	69	24	37	24	13	1.91
381317--381349	16	2.0	17	88	5	50	30	9	36	24	1.86
395433--395506	23	3.2	23	74	16	55	45	18	12	22	1.83
396757--396791	2	17.5	2	100	0	70	48	0	0	51	1.00
396849--396879	2	15.5	2	100	0	62	51	0	0	48	1.00
396994--397097	30	3.4	30	78	2	109	61	2	12	23	1.44
399194--400058	431	2.0	431	85	2	1184	26	15	19	37	1.92
402466--402528	29	2.1	31	88	5	94	49	12	0	38	1.41
404628--404811	95	1.9	94	81	5	219	41	14	20	24	1.89
405176--405364	45	4.3	45	87	4	271	41	11	23	23	1.86
407674--407733	31	1.9	31	93	0	102	28	13	15	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416682--416743	30	2.1	30	93	0	106	27	24	16	32	1.96
418367--418422	21	2.7	21	88	0	85	39	25	16	19	1.91
419363--419410	25	2.0	24	91	4	78	29	20	18	31	1.97
421655--421732	28	2.8	28	75	12	88	41	16	8	33	1.80
422030--422137	30	3.6	29	79	9	101	1	10	26	61	1.39
423618--423677	31	2.0	31	83	6	79	48	10	15	26	1.76
430914--430941	2	14.0	2	100	0	56	50	0	0	50	1.00
433568--433621	25	2.1	26	86	3	74	14	16	46	22	1.84
440300--440358	20	3.0	20	84	0	64	32	18	15	33	1.92
440326--440375	21	2.4	21	90	3	75	28	18	20	34	1.95
442977--443031	28	2.0	28	88	0	83	30	14	18	36	1.91
446585--446630	21	2.2	21	84	7	58	23	23	28	23	2.00
449479--449544	30	2.2	31	91	2	107	39	4	24	31	1.75
449656--449680	8	3.1	8	100	0	50	36	0	0	64	0.94
461783--462181	49	8.2	49	85	2	500	29	21	13	35	1.91
461778--462180	146	2.8	147	85	4	503	29	21	13	35	1.91
461795--462181	195	2.0	195	85	3	528	29	21	13	35	1.91
467726--467771	20	2.2	22	84	7	60	32	15	26	26	1.95
468190--468412	45	5.5	42	67	22	145	35	10	24	29	1.89
468181--468423	79	3.1	78	88	2	351	37	10	23	27	1.88
472316--472362	21	2.4	18	80	16	58	38	6	14	40	1.72
474382--474581	95	2.1	95	87	2	287	34	16	21	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474996--475138	34	3.5	42	75	19	149	32	11	26	29	1.91
478222--478295	38	1.9	38	100	0	148	36	14	21	27	1.93
503787--503822	17	2.1	17	100	0	72	13	11	47	27	1.77
518922--518991	22	3.3	21	72	16	63	44	5	1	48	1.35
518953--519125	90	1.9	89	91	1	283	44	7	10	37	1.67
526846--526875	11	2.7	11	94	0	51	26	20	3	50	1.64
527297--527340	19	2.5	18	82	10	56	45	0	0	54	0.99
532191--532456	134	2.0	134	92	0	442	28	13	18	38	1.90
535346--535391	20	2.3	20	85	3	58	39	0	2	58	1.10
537844--538581	54	13.7	54	84	4	886	33	15	17	32	1.92
541247--541320	32	2.3	32	78	0	85	17	29	28	24	1.97
545769--546381	60	10.2	60	87	0	850	37	13	21	28	1.91
547311--547739	214	2.0	215	99	0	851	32	15	26	25	1.95
548477--548570	28	3.4	28	84	0	116	44	6	26	22	1.76
554207--554563	60	5.9	60	89	0	520	35	14	21	28	1.93
557151--557176	8	3.2	8	100	0	52	57	0	0	42	0.98
557151--557250	41	2.6	36	77	13	101	60	0	4	36	1.16
561418--561532	56	2.1	56	100	0	230	28	12	27	31	1.92
564630--564728	49	2.0	50	84	2	128	38	22	9	30	1.85
566130--566333	101	2.0	102	99	0	401	29	14	27	27	1.95
567553--567578	2	13.0	2	100	0	52	50	0	0	50	1.00
572824--572880	26	2.2	26	90	0	87	28	7	3	61	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
572819--572869	15	3.3	15	78	5	57	25	9	1	62	1.36
580371--580461	42	2.2	42	84	7	114	45	10	15	28	1.80
580371--580461	21	4.3	21	78	8	96	45	10	15	28	1.80
580371--580473	21	4.9	21	77	11	79	44	11	15	28	1.81
602908--602961	23	2.5	23	88	11	71	27	16	16	38	1.90
605056--605080	13	1.9	13	100	0	50	32	0	16	52	1.44
610275--610346	20	3.6	20	75	14	67	37	15	16	30	1.90
613276--613325	25	2.0	24	88	3	73	38	6	10	46	1.62
618650--618774	54	2.3	54	87	0	169	29	19	19	32	1.96
625143--625297	54	2.9	54	83	2	197	29	14	18	38	1.90
637160--637510	174	2.0	177	98	1	681	27	18	17	35	1.94
649861--650005	47	3.3	45	74	10	115	40	3	29	26	1.73
650045--650250	100	2.0	102	83	4	258	32	2	31	33	1.73
650060--650292	100	2.3	100	79	6	249	30	2	30	36	1.71
650436--650477	18	2.4	18	84	7	52	69	4	14	11	1.34
650683--650773	20	4.3	21	81	10	98	42	6	3	47	1.46
650683--650907	42	5.1	42	74	15	152	43	4	4	47	1.45
650723--650818	48	1.9	50	87	6	142	44	4	4	46	1.41
650767--650907	22	6.6	22	77	12	136	43	3	4	48	1.42
650880--650948	31	2.2	33	89	5	106	42	2	4	50	1.37
650882--650931	15	3.3	15	77	5	55	48	2	4	46	1.32
650854--650990	50	2.7	52	82	8	165	42	4	6	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
650961--651032	32	2.3	33	80	9	87	38	4	8	48	1.53
651008--651220	22	9.6	22	71	18	133	35	2	8	53	1.45
651060--651171	38	2.9	39	76	12	131	35	0	7	56	1.33
651008--651161	9	17.7	9	69	24	91	35	1	9	54	1.40
651039--651199	13	12.2	13	69	21	95	36	1	8	54	1.41
651138--651230	22	4.1	22	74	20	84	38	3	9	48	1.52
651269--651311	16	2.6	17	78	10	54	37	6	4	51	1.50
651299--651376	2	40.0	2	70	14	56	47	1	3	47	1.28
651297--651371	33	2.2	33	83	2	87	48	1	4	46	1.29
655438--655486	20	2.5	20	86	3	64	30	12	6	51	1.64
658742--658776	15	2.3	15	95	0	61	34	20	5	40	1.76
660558--660624	20	3.2	20	69	22	66	35	19	23	20	1.95
660519--660652	42	3.2	41	86	4	160	33	17	21	26	1.96
663206--663265	22	2.8	21	78	17	70	6	16	0	76	0.99
667464--667627	81	2.0	81	96	0	301	60	8	9	21	1.53
670849--670893	19	2.2	21	84	7	58	2	6	6	84	0.85
670948--670989	22	1.9	22	95	0	75	33	26	11	28	1.92
676618--676681	21	3.0	21	100	0	128	14	25	9	51	1.71
677688--677745	28	2.1	28	87	3	82	51	1	0	46	1.11
691865--691951	35	2.5	34	82	12	106	55	9	8	27	1.60
703183--703361	29	6.2	29	75	10	134	36	4	2	56	1.32
703370--703436	31	2.2	30	91	2	107	35	8	0	55	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
703453--703637	29	6.7	29	69	14	104	56	1	5	36	1.29
703570--703637	30	2.2	30	84	7	84	61	0	4	33	1.16
705639--705678	20	2.0	21	90	5	64	30	27	10	32	1.89
721632--721665	2	17.0	2	100	0	68	50	0	0	50	1.00
721748--722188	144	3.0	142	75	10	381	36	7	15	39	1.76
723142--723202	22	2.8	21	80	9	68	37	26	16	19	1.93
729664--730129	81	5.8	81	81	1	544	36	10	21	30	1.88
729675--730116	160	2.7	161	81	3	521	35	11	22	30	1.89
729664--730128	241	1.9	240	81	1	554	36	10	21	30	1.88
729688--730196	81	6.3	81	78	5	229	37	11	20	30	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11