genome.fa.s7807.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007807.1 Hibiscus syriacus cultivar Beakdansim tig00110126_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2195110

Tables:   1   2   3   4   5   6   7   8   9   

This is table  1  of  9  ( 993 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11198--11223	2	13.0	2	100	0	52	50	0	0	50	1.00
11424--11490	29	2.3	29	77	10	73	49	5	5	38	1.52
12589--12655	29	2.3	29	77	10	73	49	5	5	38	1.52
14165--14194	3	9.7	3	92	7	51	63	0	0	36	0.95
16129--16182	25	2.2	25	86	0	72	55	5	11	27	1.57
16282--16362	42	1.9	43	84	2	110	49	9	19	20	1.77
36279--36304	3	8.7	3	100	0	52	0	30	0	69	0.89
37608--37672	31	2.1	31	85	0	85	38	21	4	35	1.74
37635--37697	26	2.4	26	86	5	92	36	25	4	33	1.77
38815--38864	21	2.5	20	83	3	55	38	10	14	38	1.79
45616--45957	139	2.5	138	88	2	490	26	17	20	35	1.95
46293--46347	22	2.6	23	73	23	57	20	14	18	47	1.83
46930--46977	7	6.7	7	84	11	62	0	16	2	81	0.79
57453--57487	9	3.8	9	92	3	52	88	0	2	8	0.61
57450--57479	13	2.4	12	94	5	51	90	0	3	6	0.56
57446--57487	22	2.0	21	95	4	75	88	0	2	9	0.61
57608--57652	2	22.5	2	88	0	63	53	2	2	42	1.25
58947--58973	12	2.2	12	100	0	54	66	0	0	33	0.92
61091--61122	16	2.0	16	100	0	64	25	18	18	37	1.94
65223--65305	20	3.9	21	76	7	78	18	24	36	21	1.95
72012--72055	20	2.3	20	81	18	58	31	13	22	31	1.93
73858--73882	13	1.9	13	100	0	50	20	8	0	72	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73866--73929	33	1.9	33	84	6	85	32	3	7	56	1.44
77398--77422	13	1.9	13	100	0	50	56	4	0	40	1.18
80713--80751	16	2.4	16	82	0	51	20	25	12	41	1.88
81007--81053	14	3.7	14	71	26	50	44	0	4	51	1.21
81006--81055	23	2.1	24	96	3	93	48	0	4	48	1.20
81528--81572	19	2.3	20	92	3	74	22	35	0	42	1.54
82265--82306	20	2.2	20	91	4	68	40	2	35	21	1.66
82543--82600	7	8.3	7	80	0	53	44	36	0	18	1.50
82543--82597	14	3.9	14	80	0	65	45	36	0	18	1.49
82602--82650	20	2.5	19	83	6	62	46	6	6	40	1.53
82624--82673	25	2.0	25	88	4	73	54	4	2	40	1.31
82767--82863	2	48.5	2	69	19	51	45	5	2	47	1.36
82816--82863	15	3.3	15	85	5	64	41	4	4	50	1.41
82981--83038	18	3.1	19	85	12	84	46	0	5	48	1.24
84029--84075	2	24.0	2	86	4	69	46	2	0	51	1.13
84101--84509	36	11.6	35	75	16	271	44	2	5	48	1.38
84212--84263	27	1.9	27	92	0	86	42	3	5	48	1.45
84227--84508	38	7.8	37	74	14	207	43	2	5	48	1.38
84283--84485	103	1.9	103	82	10	252	45	1	5	47	1.34
84386--84513	37	3.5	38	79	9	140	44	0	4	50	1.28
85018--85075	7	8.4	7	86	1	73	63	34	0	1	1.04
85011--85075	21	3.1	21	88	2	87	61	33	1	3	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90381--90467	16	5.4	16	92	0	138	20	26	13	39	1.90
90723--90769	14	3.7	14	71	26	50	44	0	4	51	1.21
90722--90771	23	2.1	24	96	3	93	48	0	4	48	1.20
94256--94336	23	3.5	24	81	5	67	11	2	41	44	1.53
94277--94427	6	25.3	6	74	6	101	9	1	43	45	1.44
94292--94422	19	7.3	18	72	10	72	9	0	44	45	1.41
94304--94368	17	3.6	17	82	10	85	3	0	47	49	1.17
94304--94469	24	6.7	24	71	15	88	12	1	41	44	1.52
94397--94459	6	10.5	6	86	6	83	17	3	33	46	1.64
95142--95244	16	6.7	15	75	18	65	48	0	0	49	1.14
95152--95263	6	17.0	7	69	24	50	50	0	1	48	1.11
95152--95244	28	3.5	28	73	21	94	48	0	1	50	1.07
95230--95418	31	6.0	29	72	22	123	49	3	4	42	1.40
95297--95358	14	4.4	14	76	15	56	45	1	6	46	1.38
95324--95412	15	5.6	15	69	19	56	50	3	3	42	1.35
95192--95454	131	2.0	133	83	8	333	49	3	4	43	1.38
95401--95442	22	2.0	21	90	9	68	50	9	4	35	1.56
95522--95613	24	4.2	22	77	17	77	43	9	6	40	1.64
95535--95620	22	3.7	23	82	11	88	44	10	6	38	1.66
95609--95679	37	1.9	37	85	5	99	39	9	9	40	1.72
95638--95682	24	1.9	23	86	4	63	37	6	8	46	1.61
95697--95762	7	9.6	7	80	9	64	18	0	33	48	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95868--95941	37	2.1	36	87	5	105	40	10	8	40	1.70
96160--96360	79	2.5	79	84	4	219	42	6	2	47	1.43
96248--96283	15	2.4	15	95	0	63	41	2	5	50	1.40
96329--96431	13	7.1	14	70	19	70	41	5	6	45	1.55
96392--96513	18	7.2	18	71	17	77	45	2	5	46	1.40
96463--96492	13	2.3	13	94	0	51	53	0	3	43	1.17
96480--96537	18	3.2	19	88	7	86	41	0	3	55	1.17
96373--96537	83	2.0	84	86	5	237	44	3	4	47	1.42
98732--98775	20	2.2	20	88	8	63	18	4	6	70	1.27
102082--102451	184	2.0	185	88	5	561	43	3	7	44	1.50
102459--102492	9	3.7	9	88	4	50	23	8	14	52	1.69
103553--103577	10	2.5	10	100	0	50	24	16	12	48	1.79
105111--105141	16	1.9	16	93	0	53	58	9	0	32	1.31
105182--105215	17	2.1	15	89	10	50	32	0	0	67	0.91
105997--106033	12	3.0	12	92	4	56	18	54	16	10	1.71
108187--108266	32	2.5	32	80	6	83	30	18	16	35	1.93
116165--116214	25	2.0	25	100	0	100	44	4	4	48	1.40
116743--116784	21	2.0	21	100	0	84	33	28	19	19	1.96
118614--118656	23	1.9	22	85	4	59	25	0	4	69	1.07
123448--123591	65	2.2	64	84	11	179	25	17	25	31	1.97
126261--126316	21	2.5	23	75	16	64	37	23	16	23	1.93
128331--128368	7	5.4	7	96	0	58	31	28	23	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128358--128409	22	2.2	24	86	10	72	13	23	44	19	1.86
135326--135359	17	2.0	17	94	0	59	20	17	26	35	1.95
135520--135604	5	16.8	5	75	13	68	7	21	50	21	1.72
135513--135579	22	3.0	22	100	0	134	8	22	50	17	1.74
135519--135604	17	6.1	14	73	15	61	6	22	50	20	1.72
135513--135605	44	2.1	44	86	7	127	9	21	48	20	1.78
139740--139779	21	1.9	21	85	10	55	35	10	2	52	1.48
141771--141858	45	1.9	46	86	2	124	28	18	25	28	1.98
143285--143329	24	1.9	24	82	13	58	51	13	4	31	1.61
144266--144316	17	2.9	17	80	13	59	60	0	11	27	1.31
147872--148140	136	2.0	136	96	0	493	23	9	13	53	1.69
151156--151254	47	2.1	47	86	0	135	28	14	18	39	1.89
155651--155947	74	4.0	73	89	4	411	32	11	16	39	1.85
155950--156014	20	3.2	20	95	0	112	33	18	23	24	1.96
155987--156495	240	2.1	240	85	4	682	34	14	17	33	1.90
156821--156973	44	3.5	44	85	0	180	30	22	15	30	1.95
158397--158445	9	5.0	10	75	20	50	22	4	2	71	1.13
158397--158445	19	2.5	21	78	21	61	22	4	2	71	1.13
158491--158537	24	1.9	24	83	12	60	23	10	0	65	1.23
158534--158627	14	6.6	14	70	17	50	9	5	4	80	0.99
158520--158630	57	1.9	57	82	13	140	10	5	4	79	1.04
158518--158595	5	16.2	5	76	10	56	12	5	3	78	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158582--158608	12	2.2	12	100	0	54	7	7	0	85	0.75
158534--158640	19	6.0	17	73	18	76	10	5	4	79	1.04
162367--162599	84	2.8	84	93	0	385	33	25	18	23	1.97
162568--162626	27	2.2	27	93	0	100	37	25	15	22	1.93
162482--162697	111	1.9	111	92	0	360	34	23	18	24	1.96
162593--164023	84	17.1	84	84	1	1795	34	22	18	23	1.96
162398--162794	195	2.0	195	89	0	607	33	24	18	23	1.97
162367--162878	279	1.8	279	87	3	762	34	23	17	24	1.96
165729--165966	14	16.5	14	70	14	103	17	6	2	73	1.15
165756--165814	17	3.6	16	73	15	57	16	10	0	72	1.10

Tables:   1   2   3   4   5   6   7   8   9