genome.fa.s7807.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007807.1 Hibiscus syriacus cultivar Beakdansim tig00110126_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2195110

Tables:   1   2   3   4   5   6   7   8   9   

This is table  8  of  9  ( 993 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1697441--1697491	10	4.8	10	81	18	59	82	13	3	0	0.81
1697441--1697491	21	2.4	21	86	3	66	82	13	3	0	0.81
1697455--1697498	19	2.2	19	88	8	61	81	11	6	0	0.86
1705591--1705642	20	2.6	20	93	0	86	36	15	5	42	1.71
1709796--1709847	20	2.6	20	93	0	86	36	15	5	42	1.71
1715995--1716062	35	1.9	36	90	3	111	30	2	35	30	1.73
1716401--1716443	19	2.2	20	87	4	61	48	6	9	34	1.62
1720503--1720582	35	2.2	37	91	4	128	31	37	3	27	1.74
1720974--1721020	12	4.2	12	92	7	73	23	8	48	19	1.75
1725649--1725697	19	2.6	19	100	0	98	57	8	10	24	1.59
1752870--1752926	30	1.9	30	96	0	105	38	24	17	19	1.93
1753630--1753687	24	2.4	25	94	2	100	70	8	6	13	1.32
1759369--1759425	30	1.9	30	92	7	98	40	22	17	19	1.91
1761487--1761564	39	2.0	39	100	0	156	23	28	15	33	1.95
1763195--1763248	26	2.0	28	86	13	78	31	27	18	22	1.97
1766135--1766185	24	2.2	24	96	3	95	15	3	9	70	1.29
1779545--1779590	20	2.2	21	84	3	58	30	4	15	50	1.63
1780428--1780489	14	4.2	14	82	13	72	80	9	9	0	0.90
1780420--1780478	13	4.5	13	79	10	57	84	8	6	0	0.77
1780421--1780489	16	4.4	16	80	9	70	81	10	8	0	0.89
1780439--1780489	14	3.4	14	91	8	75	78	9	11	0	0.97
1787364--1787445	28	2.9	28	98	0	155	42	12	18	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1790152--1790205	19	2.7	20	91	5	83	46	7	12	33	1.70
1793465--1793508	8	5.2	8	82	17	54	0	25	0	75	0.81
1793780--1793816	18	2.1	18	90	10	58	64	0	10	24	1.25
1794233--1794284	19	2.6	21	90	6	81	46	7	13	32	1.72
1797642--1797688	24	2.0	24	83	8	60	65	12	12	8	1.46
1799179--1799210	16	2.0	16	93	0	55	31	18	3	46	1.65
1806487--1806525	20	1.9	21	84	5	53	33	0	38	28	1.57
1815230--1815284	24	2.3	24	75	9	60	67	10	14	7	1.41
1818334--1818387	28	1.9	28	100	0	108	42	12	18	25	1.86
1824087--1824112	10	2.6	10	100	0	52	0	26	0	73	0.84
1845339--1845382	24	2.0	23	86	13	65	0	15	4	79	0.89
1855174--1855224	20	2.6	20	90	3	77	35	15	7	41	1.76
1858497--1858581	36	2.4	36	93	0	143	31	4	34	29	1.78
1862292--1862340	23	2.1	24	81	11	57	63	0	22	14	1.30
1862965--1863049	36	2.4	36	93	0	143	31	4	34	29	1.78
1864965--1865047	35	2.3	36	79	4	96	30	36	2	31	1.71
1866680--1866764	36	2.4	36	93	0	143	29	34	4	31	1.78
1872044--1872069	12	2.2	12	100	0	52	92	7	0	0	0.39
1872105--1872160	16	3.6	16	80	9	71	85	7	7	0	0.73
1872107--1872160	14	3.7	14	87	7	72	85	7	7	0	0.75
1872107--1872173	30	2.3	30	84	2	82	80	10	8	0	0.90
1872123--1872161	13	2.8	13	92	7	60	79	7	12	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1873604--1873708	54	2.0	53	94	5	187	38	22	20	19	1.94
1878168--1878227	32	1.9	31	96	3	111	30	31	6	31	1.83
1888286--1888368	35	2.3	36	79	4	96	30	36	2	31	1.71
1889320--1889399	35	2.2	37	88	4	119	32	35	3	28	1.75
1893228--1893270	23	1.9	22	90	4	68	69	4	11	13	1.33
1895589--1895618	15	1.9	16	93	6	53	0	26	6	66	1.16
1897434--1897479	20	2.2	21	84	7	67	2	6	10	80	0.98
1897807--1897849	23	1.9	22	90	4	68	69	4	11	13	1.33
1902222--1902273	19	2.6	21	90	6	81	46	7	13	32	1.72
1905554--1905583	5	5.8	5	92	7	51	3	20	0	76	0.92
1906326--1906377	19	2.6	21	90	6	81	46	7	13	32	1.72
1908694--1908723	13	2.4	13	94	5	53	43	0	30	26	1.55
1909945--1909995	20	2.6	20	90	3	77	35	15	5	43	1.71
1910701--1910758	17	3.4	16	71	28	57	74	3	18	3	1.11
1919125--1919175	20	2.6	20	90	3	77	35	15	5	43	1.71
1921086--1921137	19	2.6	19	84	6	68	48	5	13	32	1.66
1921086--1921135	21	2.5	21	87	6	68	50	6	12	32	1.64
1931232--1931283	19	2.6	21	87	6	72	48	3	13	34	1.61
1934505--1934562	11	5.2	11	76	19	50	79	1	18	0	0.82
1934505--1934559	19	2.9	18	80	20	67	80	1	18	0	0.81
1941089--1941135	21	2.3	19	85	10	58	65	0	12	21	1.25
1944443--1944506	26	2.5	26	83	14	80	7	17	4	70	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1945937--1945968	16	2.0	16	93	0	55	46	3	18	31	1.65
1956989--1957099	35	3.2	35	84	2	143	27	35	3	33	1.75
1957703--1957760	16	3.8	14	80	12	62	15	17	0	67	1.24
1957703--1957754	16	3.1	16	86	5	68	15	17	0	67	1.24
1961514--1961615	35	2.9	35	85	1	132	28	33	2	35	1.72
1962214--1962265	16	3.1	16	83	5	59	13	17	0	69	1.19
1964665--1964712	21	2.5	18	87	12	69	81	12	6	0	0.87
1964653--1964701	11	4.7	10	75	9	53	81	14	4	0	0.83
1964665--1964719	21	2.8	18	81	13	65	78	14	7	0	0.96
1973712--1973822	35	3.2	35	81	2	134	27	34	3	34	1.75
1976957--1976989	13	2.4	14	90	5	50	60	3	33	3	1.27
1978753--1978782	13	2.4	13	94	5	53	43	0	30	26	1.55
1979998--1980053	28	2.0	28	89	0	85	28	16	12	42	1.84
1982045--1982145	29	3.5	29	98	0	193	42	2	13	40	1.60
1982041--1982166	58	2.2	56	88	4	191	39	2	13	44	1.57
1982174--1982418	80	3.0	80	87	6	339	36	4	15	43	1.66
1982173--1982383	108	2.0	107	94	0	368	37	3	15	43	1.65
1982174--1982418	28	8.9	28	90	4	383	36	4	15	43	1.66
1986386--1986479	28	3.3	28	90	1	143	40	2	14	42	1.58
1986485--1986785	28	10.8	28	90	4	407	39	3	13	43	1.61
1987293--1987448	77	2.0	77	100	0	312	28	20	20	30	1.98
1987370--1987574	108	1.9	108	97	2	394	29	18	19	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1996590--1996641	19	2.6	21	90	6	81	46	7	13	32	1.72
2000607--2000645	6	6.2	6	85	8	51	0	17	2	79	0.84
2000607--2000645	13	3.1	12	82	10	51	0	17	2	79	0.84
2000854--2000888	16	2.2	15	90	10	52	62	0	25	11	1.28
2002389--2002448	30	2.0	31	83	3	77	26	8	10	55	1.61
2003357--2003407	19	2.6	20	90	3	77	33	15	5	45	1.71
2004126--2004187	21	2.9	21	85	9	72	75	3	19	1	1.02
2004144--2004176	16	2.1	16	88	11	50	81	3	15	0	0.80
2006505--2006564	30	2.0	31	83	3	77	26	8	10	55	1.61
2007464--2007514	20	2.6	20	90	3	77	35	15	5	43	1.71
2014760--2014789	13	2.4	13	94	5	53	43	0	30	26	1.55
2019340--2019385	23	2.0	23	88	12	69	17	13	4	65	1.42
2024050--2024095	23	2.0	23	88	12	69	15	13	4	67	1.38
2027323--2027365	23	1.9	21	81	13	50	34	13	18	32	1.90
2032160--2032278	35	3.4	34	85	5	141	33	34	4	27	1.76
2033902--2033943	16	2.6	16	84	3	57	61	0	19	19	1.34
2034054--2034111	28	2.1	27	81	12	66	10	18	3	67	1.35
2038887--2038984	50	2.0	50	80	8	110	46	15	4	33	1.64
2046019--2046159	36	3.9	36	88	1	203	27	36	4	30	1.78
2046537--2046583	25	2.0	24	84	16	62	74	8	17	0	1.05
2046799--2046847	23	2.1	24	81	11	57	14	22	0	63	1.30
2050586--2050726	36	3.9	36	88	1	203	27	36	4	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2051480--2051518	17	2.3	17	100	0	78	46	17	25	10	1.80
2055996--2056036	22	1.9	21	90	5	64	21	0	34	43	1.53
2064816--2064863	20	2.3	20	82	3	51	10	12	2	75	1.14
2070763--2070792	10	3.0	10	100	0	60	30	10	30	30	1.90
2071819--2071863	23	2.0	23	90	0	72	62	13	13	11	1.55
2075812--2075871	23	2.5	24	78	5	77	68	10	11	10	1.40
2079803--2079844	22	2.0	22	90	4	68	59	14	14	11	1.61
2089786--2089838	23	2.3	23	86	3	70	9	16	11	62	1.54
2089779--2089838	24	2.5	24	83	2	77	8	18	10	63	1.50
2090684--2090869	91	2.0	91	97	0	354	20	22	29	27	1.98

Tables:   1   2   3   4   5   6   7   8   9