genome.fa.s7807.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007807.1 Hibiscus syriacus cultivar Beakdansim tig00110126_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2195110

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 993 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353795--354793	32	33.7	32	68	22	458	53	12	0	33	1.42
353859--353901	22	2.0	22	100	0	86	51	13	0	34	1.42
353861--353909	22	2.2	22	88	3	71	55	14	0	30	1.40
353827--354793	166	5.8	166	84	9	1069	53	12	0	33	1.42
354057--354099	22	2.0	22	100	0	86	51	13	0	34	1.42
354059--354107	22	2.2	22	88	3	71	55	14	0	30	1.40
354181--354234	14	3.6	14	72	18	54	57	5	0	37	1.22
354225--354273	22	2.2	22	85	3	62	55	12	0	32	1.37
354389--354431	22	2.0	22	100	0	86	51	13	0	34	1.42
354391--354439	22	2.2	22	88	3	71	55	14	0	30	1.40
354443--354485	22	2.0	22	100	0	86	51	13	0	34	1.42
354445--354493	22	2.2	22	88	3	71	55	14	0	30	1.40
354501--354649	26	5.3	26	72	21	88	56	13	0	30	1.38
354448--354685	88	2.9	80	86	9	359	55	13	0	31	1.38
354557--354608	18	3.1	18	68	21	58	57	15	0	26	1.38
354667--354715	22	2.2	22	85	3	62	55	12	0	32	1.37
354721--354769	22	2.2	22	85	3	62	55	12	0	32	1.37
354792--354896	15	7.0	15	93	0	165	49	0	0	49	1.07
354792--354948	15	10.7	15	81	11	157	49	1	0	49	1.12
357591--357644	25	2.2	25	100	0	108	53	27	7	11	1.63
361413--362373	220	4.4	220	82	3	1156	26	14	25	33	1.94
361413--362351	429	2.2	433	84	2	1222	26	13	25	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363303--363381	25	3.2	24	77	16	81	5	13	2	78	1.02
363303--363360	7	8.1	7	72	24	50	3	13	1	81	0.91
363324--363390	11	6.1	11	79	10	57	4	16	2	76	1.08
369460--369509	26	2.1	24	85	14	68	44	0	4	52	1.20
400091--400484	46	8.6	46	93	0	662	45	13	21	19	1.85
400307--400647	164	2.1	164	93	0	583	43	13	21	20	1.86
400262--400680	210	2.0	210	91	0	685	44	13	21	20	1.85
400471--400680	46	4.6	46	92	0	330	44	13	20	21	1.85
400099--400530	138	3.1	133	87	5	535	44	13	21	20	1.85
400697--400725	15	1.9	15	100	0	58	68	3	13	13	1.33
404201--404250	24	2.0	25	81	11	59	28	14	6	52	1.65
405639--405665	2	13.5	2	100	0	54	48	0	0	51	1.00
405771--405842	22	3.5	22	72	18	82	51	0	1	47	1.09
405791--405852	17	3.4	17	72	20	61	48	0	3	48	1.17
405787--405854	19	3.5	19	75	25	79	50	0	2	47	1.16
405741--405853	39	2.8	39	94	4	190	51	0	2	45	1.21
405749--405873	39	3.1	39	88	5	144	49	1	4	44	1.30
405882--405906	2	12.5	2	100	0	50	48	0	0	52	1.00
405986--406027	2	21.0	2	100	0	84	50	0	0	50	1.00
405641--406136	227	2.1	235	88	7	744	47	2	6	44	1.40
406014--406100	41	2.1	41	85	8	115	49	2	4	43	1.35
406116--406171	18	3.2	16	77	22	51	37	0	8	53	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409718--409828	55	2.0	55	100	0	222	45	5	30	18	1.71
411330--411370	21	1.9	22	90	5	66	24	19	17	39	1.92
414805--414845	21	1.9	22	90	5	66	24	19	17	39	1.92
415055--415110	20	2.8	20	91	0	94	37	19	8	33	1.83
416468--416516	19	2.3	22	76	20	59	36	12	4	46	1.60
416478--416515	19	1.9	21	89	10	62	44	13	2	39	1.57
418287--418327	21	1.9	22	90	5	66	24	19	17	39	1.92
429902--430515	219	2.8	218	81	2	660	31	19	19	29	1.96
431095--431139	16	2.9	16	77	9	58	37	0	6	55	1.26
442532--442576	23	2.0	23	86	0	63	46	24	6	22	1.75
444992--445038	20	2.3	20	100	0	94	34	29	10	25	1.90
450179--450343	90	1.8	90	93	3	287	35	12	7	45	1.69
466115--466175	20	2.9	20	80	7	59	18	24	32	24	1.97
466181--466250	29	2.4	29	97	0	131	51	15	7	25	1.69
466181--466258	29	2.8	29	92	3	115	48	14	6	30	1.68
469998--470038	22	1.9	21	85	5	55	36	4	2	56	1.34
475223--475338	24	5.0	23	74	21	84	52	4	1	41	1.31
475174--475338	33	5.2	30	72	20	115	55	5	1	37	1.34
475182--475339	12	13.5	12	70	21	63	55	5	1	36	1.35
475223--475381	19	9.3	17	71	17	100	51	3	2	42	1.31
475230--475381	7	21.1	7	72	19	118	51	2	2	43	1.29
475230--475415	2	100.5	2	69	25	72	51	5	2	40	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475174--475332	5	30.6	5	66	24	55	55	5	1	37	1.35
475230--475380	30	4.9	30	71	19	100	50	2	2	43	1.29
475448--475543	5	18.6	5	70	23	58	39	2	4	54	1.32
475451--475498	20	2.5	20	86	10	64	41	2	4	52	1.32
475477--475544	24	2.8	24	76	17	68	38	1	4	55	1.29
475447--475543	31	3.3	30	87	9	130	40	2	4	53	1.32
477751--477792	16	2.6	16	88	0	57	16	7	0	76	1.00
483446--483519	2	37.5	2	78	8	53	37	4	4	54	1.39
483939--483966	6	4.7	6	100	0	56	35	35	14	14	1.86
501270--501306	18	2.1	18	94	0	65	32	16	24	27	1.96
501350--501378	9	3.2	9	100	0	58	41	0	20	37	1.53
509457--509652	17	11.4	17	71	19	101	54	3	2	39	1.29
509457--509652	5	37.4	5	68	24	88	54	3	2	39	1.29
509450--509648	56	3.7	53	75	15	137	54	3	3	39	1.31
509458--509652	12	17.0	11	71	18	114	54	3	2	39	1.29
509568--509654	2	48.5	2	72	24	70	52	1	2	43	1.21
509493--509654	29	5.3	31	73	21	91	53	3	1	41	1.27
509496--509645	7	20.7	7	71	21	105	52	3	2	42	1.29
509998--510023	6	4.3	6	100	0	52	53	0	30	15	1.42
512590--512640	21	2.4	21	96	0	93	21	13	13	50	1.76
512762--512857	49	2.0	49	87	2	140	39	26	14	19	1.90
512779--512873	49	1.9	49	87	4	138	42	27	10	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516124--516148	6	4.2	6	100	0	50	16	0	0	84	0.63
516096--516153	22	2.6	22	75	8	55	15	5	3	75	1.11
516627--516682	21	2.5	22	82	5	69	41	5	17	35	1.73
517614--517720	27	3.9	27	79	12	110	47	10	7	34	1.66
517598--517721	29	4.4	29	78	10	114	47	9	9	33	1.69
517614--517777	29	5.8	29	76	13	128	50	10	6	32	1.61
520447--520960	137	3.8	136	87	1	688	26	15	24	33	1.95
520864--521082	120	1.8	120	89	0	348	23	13	25	37	1.92
530635--530675	14	2.8	16	78	17	52	39	4	0	56	1.21
530635--530670	15	2.3	17	86	13	51	38	2	0	58	1.13
530754--530850	45	2.2	42	82	8	115	64	1	8	25	1.27
531341--531409	22	3.1	22	87	2	84	17	39	20	23	1.92
534326--534358	2	16.5	2	100	0	66	51	0	0	48	1.00
536534--536735	46	4.6	46	84	10	269	19	23	9	46	1.80
536566--536943	72	5.2	72	75	17	348	20	22	9	47	1.79
536561--536737	84	2.1	84	89	4	284	19	23	10	46	1.80
536723--537001	46	6.0	46	89	0	423	22	21	9	45	1.81
536678--537001	92	3.5	88	83	8	328	22	21	9	45	1.80
536664--536872	118	1.8	116	92	6	363	22	22	9	46	1.79
537524--537583	31	1.9	31	83	12	79	23	25	18	33	1.97
538910--538942	9	3.8	9	92	4	50	39	3	0	57	1.14
541032--541062	2	16.0	2	93	6	55	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
546572--546741	84	2.0	84	91	0	277	40	19	22	17	1.91
549522--549723	34	6.0	34	91	2	320	31	22	17	28	1.97
549683--549850	79	2.1	79	88	0	246	30	23	19	26	1.98
549896--550596	111	6.3	111	93	1	1154	30	24	16	27	1.97
552799--552869	2	36.0	2	97	2	135	50	0	0	49	1.00
554777--554819	2	21.5	2	95	0	77	46	0	2	51	1.13
556961--557552	46	12.8	46	91	1	891	20	22	11	45	1.83
557342--557467	20	5.7	20	72	20	83	20	23	11	43	1.85
557977--558047	19	3.5	19	78	19	81	28	22	15	33	1.95
558086--558123	20	1.9	20	88	0	58	21	31	13	34	1.91

Tables:   1   2   3   4   5   6   7   8   9