genome.fa.s7807.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007807.1 Hibiscus syriacus cultivar Beakdansim tig00110126_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2195110

Tables:   1   2   3   4   5   6   7   8   9   

This is table  7  of  9  ( 993 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1321424--1321662	101	2.4	100	78	10	231	22	15	23	38	1.92
1329531--1329611	30	2.7	30	80	0	99	34	11	24	29	1.90
1332611--1335230	875	3.0	876	93	2	4487	24	16	18	39	1.91
1335807--1335844	16	2.2	17	90	9	60	84	2	2	10	0.83
1349918--1349951	17	1.9	18	94	5	61	0	20	0	79	0.73
1349929--1349968	12	3.2	12	82	6	53	2	17	2	77	0.99
1354506--1354547	14	2.9	15	82	13	52	2	19	2	76	1.01
1357317--1357425	35	3.1	36	84	7	136	33	3	36	26	1.74
1369525--1369590	28	2.5	27	83	11	75	71	1	18	9	1.20
1369540--1369590	25	2.0	25	85	14	70	70	0	17	11	1.16
1373972--1374017	22	2.0	22	83	12	56	52	13	2	32	1.52
1377694--1377760	1	67.0	1	81	0	53	0	5	7	86	0.70
1377682--1377755	18	4.3	18	76	22	79	0	8	9	82	0.85
1377696--1377759	33	2.0	33	96	3	121	0	6	7	85	0.73
1377696--1377759	11	5.9	11	81	3	85	0	6	7	85	0.73
1384560--1384602	23	1.9	21	81	13	50	32	18	13	34	1.90
1393100--1393155	7	8.7	6	78	18	51	0	23	0	76	0.78
1393100--1393155	16	3.6	16	75	18	64	0	23	0	76	0.78
1393100--1393155	19	3.0	19	82	10	62	0	23	0	76	0.78
1393543--1393641	35	2.8	35	82	1	117	34	4	36	25	1.75
1408484--1408527	17	2.6	17	89	7	63	29	25	15	29	1.96
1410242--1410303	8	8.0	8	75	13	67	82	11	6	0	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1410244--1410302	7	7.9	7	77	19	57	83	10	6	0	0.82
1410244--1410302	15	3.9	14	75	20	57	83	10	6	0	0.82
1410260--1410300	14	2.8	14	92	7	64	80	9	9	0	0.91
1410277--1410314	20	1.9	20	88	0	58	78	10	10	0	0.95
1414825--1414891	32	2.1	33	81	13	77	59	0	25	14	1.36
1421783--1421834	21	2.6	21	90	6	81	32	13	7	46	1.72
1422561--1422586	5	5.2	5	100	0	52	80	0	19	0	0.71
1422629--1422680	24	2.2	24	100	0	104	44	23	15	17	1.86
1425876--1425926	21	2.6	21	87	9	72	31	13	7	47	1.72
1434075--1434104	13	2.4	13	94	5	53	26	30	0	43	1.55
1439421--1439445	11	2.3	11	100	0	50	40	8	36	16	1.77
1456164--1456214	11	4.4	11	81	18	59	86	9	1	1	0.73
1456164--1456205	12	3.4	12	90	6	66	88	9	2	0	0.61
1456164--1456214	22	2.3	22	86	3	66	86	9	1	1	0.73
1487806--1487847	14	3.0	14	86	6	50	73	2	21	2	1.06
1490809--1490990	90	2.0	91	86	1	258	22	27	21	28	1.99
1497938--1498019	42	2.0	41	87	2	119	24	24	14	36	1.93
1498614--1498639	11	2.4	11	100	0	52	34	7	11	46	1.69
1500985--1501025	17	2.4	17	83	0	55	41	12	14	31	1.83
1511804--1511854	19	2.6	20	90	3	77	43	5	15	35	1.71
1515235--1515280	5	9.8	5	77	13	53	0	21	0	78	0.76
1515232--1515281	11	4.6	11	83	14	59	0	22	0	78	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1515228--1515269	8	5.0	8	81	18	50	0	23	0	76	0.79
1515998--1516048	19	2.6	20	90	3	77	43	5	15	35	1.71
1516958--1517017	30	2.0	31	83	3	77	55	10	8	26	1.61
1518755--1518927	90	1.9	91	89	1	267	22	26	23	27	1.99
1519703--1519744	14	3.0	14	86	6	50	73	2	21	2	1.06
1520951--1520993	23	1.9	21	81	13	50	32	18	11	37	1.87
1522750--1522922	90	1.9	91	87	1	258	22	25	23	28	1.99
1523698--1523739	14	3.0	14	86	6	50	73	2	21	2	1.06
1524909--1524951	23	1.9	21	81	13	50	32	18	11	37	1.87
1526710--1526882	90	1.9	91	87	1	258	22	25	23	28	1.99
1533536--1533567	10	3.1	10	95	4	55	28	31	9	31	1.88
1533608--1533689	42	2.0	41	90	2	128	24	25	13	36	1.92
1539524--1539579	13	4.7	11	74	21	51	0	19	1	78	0.84
1539524--1539579	18	3.1	18	82	17	71	0	19	1	78	0.84
1547177--1547229	18	2.8	19	84	15	67	1	18	3	75	1.05
1550062--1550102	17	2.4	17	83	0	55	41	12	14	31	1.83
1558744--1558772	12	2.4	12	100	0	58	0	17	0	82	0.66
1561542--1561643	35	2.9	34	82	4	114	35	4	33	26	1.78
1564925--1564959	10	3.6	10	88	3	54	82	5	11	0	0.82
1572364--1572410	16	2.8	16	81	12	51	68	0	17	14	1.22
1572596--1572646	19	2.4	22	81	15	63	0	13	5	80	0.89
1572598--1572646	24	2.1	22	85	7	62	0	12	6	81	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1576199--1576227	15	1.9	15	100	0	58	41	3	41	13	1.62
1577916--1577949	13	2.6	13	90	0	59	0	14	5	79	0.91
1577917--1577967	10	4.6	11	85	9	61	0	9	7	82	0.85
1592420--1592527	29	3.6	29	89	3	153	25	27	15	31	1.96
1594315--1594364	14	3.9	13	73	21	52	78	2	20	0	0.86
1594309--1594364	19	3.1	18	82	17	71	78	1	19	0	0.84
1594309--1594364	11	4.7	11	74	21	51	78	1	19	0	0.84
1598077--1598125	5	9.8	5	76	24	50	77	2	20	0	0.87
1598077--1598125	18	2.8	18	85	11	66	77	2	20	0	0.87
1601846--1601895	14	3.9	13	73	21	52	78	2	20	0	0.86
1601840--1601895	19	3.1	18	82	17	71	78	1	19	0	0.84
1601840--1601895	11	4.7	11	74	21	51	78	1	19	0	0.84
1605585--1605636	19	2.9	18	86	13	72	76	3	19	0	0.93
1613054--1613106	19	2.8	18	76	23	56	77	3	18	0	0.92
1613061--1613109	11	4.5	11	82	14	50	77	2	20	0	0.87
1613055--1613109	18	3.1	17	85	15	67	78	1	20	0	0.85
1616667--1616701	12	3.2	11	88	11	54	77	0	22	0	0.78
1616649--1616701	17	3.1	16	82	17	63	77	1	20	0	0.87
1625188--1625216	15	2.0	15	93	6	51	75	3	20	0	0.94
1626413--1626470	24	2.5	23	78	13	57	34	18	17	29	1.94
1627475--1627517	17	2.3	19	76	19	54	46	4	11	37	1.61
1630822--1630849	8	3.5	8	100	0	56	0	21	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1630813--1630868	16	3.5	15	83	13	60	1	17	3	76	1.01
1631589--1631640	19	2.6	21	90	6	81	46	5	13	34	1.67
1632407--1632707	150	2.0	151	98	1	579	49	6	9	33	1.62
1633510--1633536	13	2.1	13	100	0	54	25	14	22	37	1.93
1635049--1635095	23	2.0	24	87	4	69	34	4	4	57	1.38
1637927--1637978	19	2.6	21	90	6	81	46	7	13	32	1.72
1640165--1640251	43	2.0	43	100	0	174	13	35	6	43	1.71
1641289--1641337	8	6.2	8	80	20	59	0	24	0	75	0.80
1641303--1641337	13	2.7	13	83	16	54	0	22	0	77	0.78
1641296--1641337	5	8.2	5	89	10	59	0	21	0	78	0.75
1642075--1642126	19	2.6	21	90	6	81	46	7	13	32	1.72
1661324--1661375	20	2.6	20	93	0	86	42	5	15	36	1.71
1665527--1665578	20	2.6	20	93	0	86	42	5	15	36	1.71
1671252--1671293	19	2.2	19	91	0	66	33	9	7	50	1.62
1671636--1671684	11	4.2	11	78	21	55	34	36	0	28	1.58
1671634--1671701	35	1.9	36	90	3	111	32	36	1	29	1.67
1672145--1672193	24	2.1	24	84	3	64	71	6	18	4	1.23
1673678--1673720	18	2.4	18	100	0	86	65	4	20	9	1.40
1674949--1674991	12	3.6	11	82	14	50	2	16	0	81	0.79
1675377--1675456	35	2.2	37	86	4	110	27	3	37	31	1.74
1675794--1675844	19	2.6	20	87	3	68	45	5	15	33	1.71
1677846--1677888	18	2.4	18	100	0	86	65	4	20	9	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1679116--1679159	13	3.6	12	85	11	54	4	13	0	81	0.83
1679116--1679160	12	3.6	12	80	19	56	4	13	0	82	0.82
1679546--1679625	35	2.2	37	86	4	110	27	3	37	31	1.74
1679964--1680014	19	2.6	20	87	3	68	45	5	15	33	1.71
1680750--1680801	19	2.6	21	90	6	81	46	7	13	32	1.72
1685110--1685145	15	2.6	14	91	8	56	2	13	0	83	0.76
1685531--1685610	35	2.2	37	91	4	128	27	3	37	31	1.74
1685948--1685998	19	2.6	20	87	3	68	45	5	13	35	1.68
1692876--1692932	17	3.5	15	81	9	60	73	5	17	3	1.16
1692885--1692948	25	2.5	26	83	14	80	70	4	17	7	1.29

Tables:   1   2   3   4   5   6   7   8   9