genome.fa.s7807.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007807.1 Hibiscus syriacus cultivar Beakdansim tig00110126_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2195110

Tables:   1   2   3   4   5   6   7   8   9   

This is table  6  of  9  ( 993 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1011921--1011990	20	3.5	20	92	1	106	24	31	24	20	1.98
1024250--1024300	17	2.9	18	75	24	56	74	3	15	5	1.16
1024793--1024818	9	2.9	9	100	0	52	11	0	0	88	0.52
1036496--1036529	2	17.0	2	100	0	68	50	0	0	50	1.00
1040719--1040752	15	2.3	15	100	0	68	23	0	44	32	1.54
1055798--1055833	17	2.1	18	89	5	56	8	5	13	72	1.27
1057253--1057290	19	2.0	19	94	0	67	26	7	26	39	1.83
1066940--1066972	15	2.2	15	94	0	57	30	30	3	36	1.73
1068436--1068503	24	2.8	24	100	0	136	35	13	17	33	1.89
1070295--1070384	42	2.2	41	90	4	137	17	17	17	46	1.84
1073463--1073510	18	2.7	17	87	3	60	35	0	12	52	1.40
1073759--1073884	66	1.9	66	80	3	146	26	26	13	33	1.93
1073775--1073918	66	2.2	66	83	0	171	27	23	14	34	1.94
1073792--1073932	33	4.3	32	81	5	147	26	24	14	35	1.93
1073807--1073985	66	2.7	66	77	9	159	27	22	15	33	1.95
1073825--1073970	33	4.4	34	80	11	115	26	23	16	33	1.96
1081650--1081778	35	3.6	36	77	11	149	37	16	19	26	1.92
1081650--1081793	72	2.0	72	89	2	218	38	17	18	25	1.92
1083484--1083529	19	2.5	19	82	13	60	39	15	23	21	1.92
1083546--1083592	20	2.3	20	85	7	60	10	17	36	36	1.84
1085618--1085644	9	3.0	9	100	0	54	55	11	11	22	1.66
1089131--1089176	22	2.0	22	83	12	56	52	13	2	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1092167--1092208	22	1.9	22	90	0	66	40	16	16	26	1.90
1095983--1096353	55	6.8	55	83	1	422	35	17	16	30	1.92
1095990--1096353	165	2.2	164	84	4	466	34	17	17	31	1.92
1096652--1096706	22	2.6	22	82	5	69	27	21	10	40	1.87
1110359--1110407	20	2.5	20	100	0	98	30	10	24	34	1.89
1112823--1113085	55	4.8	55	87	3	343	37	17	15	30	1.91
1114904--1114946	22	2.0	22	81	9	52	39	4	4	51	1.44
1120375--1120422	23	2.0	25	92	8	82	45	6	0	47	1.27
1120374--1120430	25	2.2	25	77	20	64	43	5	0	50	1.24
1120378--1120429	24	2.2	23	86	10	70	46	5	0	48	1.26
1122450--1122643	41	4.7	41	97	0	352	35	22	11	30	1.89
1122450--1122672	82	2.7	82	89	1	232	37	22	10	29	1.88
1125097--1125154	27	2.1	27	83	0	71	39	13	27	18	1.89
1128122--1128358	121	2.0	121	90	0	375	46	5	18	28	1.71
1131592--1131902	51	6.1	51	75	7	231	43	12	6	38	1.67
1135203--1135252	23	2.2	23	92	0	82	40	10	10	40	1.72
1137592--1137626	14	2.3	15	90	9	54	80	0	20	0	0.72
1137592--1137626	5	7.0	5	90	9	54	80	0	20	0	0.72
1145315--1145357	16	2.6	17	82	14	54	60	4	2	32	1.30
1147848--1148219	52	7.3	51	69	8	186	39	11	8	40	1.72
1147901--1148217	50	6.2	50	69	7	145	39	11	8	40	1.71
1149511--1149582	31	2.3	32	85	2	92	23	33	29	13	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1153624--1153667	21	2.0	21	87	12	63	61	2	18	18	1.45
1153686--1153726	22	1.9	21	90	5	64	26	2	36	34	1.70
1154079--1154128	21	2.5	21	90	6	77	48	6	12	34	1.65
1158216--1158267	19	2.6	21	74	17	56	44	7	15	32	1.75
1162962--1163009	21	2.3	21	96	0	87	33	12	18	35	1.89
1162999--1163045	18	2.7	17	90	6	76	23	12	29	34	1.92
1163489--1163688	46	4.3	46	87	2	258	44	12	18	25	1.84
1163696--1163849	46	3.3	46	88	1	202	42	16	18	22	1.89
1163736--1163878	46	3.1	46	87	5	148	43	16	19	20	1.88
1165648--1165702	26	2.1	26	82	0	65	25	16	18	40	1.91
1165930--1165972	18	2.4	18	85	11	54	44	9	9	37	1.69
1183153--1183301	36	4.1	36	88	0	208	29	4	38	27	1.77
1183196--1183291	25	4.0	23	65	25	56	31	5	36	27	1.79
1183649--1183699	19	2.6	20	87	3	68	45	5	15	33	1.71
1186595--1186644	14	3.3	15	76	18	50	68	0	16	16	1.22
1187266--1187413	36	4.1	36	87	0	197	30	4	37	27	1.75
1187309--1187404	25	4.0	23	65	25	56	31	5	36	27	1.79
1187758--1187808	19	2.6	20	87	3	68	45	5	15	33	1.71
1199464--1199504	22	1.9	22	90	5	66	87	4	7	0	0.65
1205026--1205079	25	2.1	26	86	10	76	12	25	0	61	1.32
1205026--1205065	14	3.1	14	79	17	50	12	25	0	62	1.30
1204912--1205266	177	2.0	178	92	0	586	25	22	9	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1208310--1208349	2	20.5	2	94	5	73	47	0	0	52	1.00
1211601--1211632	17	1.9	16	93	6	55	12	15	0	71	1.14
1216260--1216294	2	18.0	2	88	5	54	48	0	2	48	1.16
1221324--1221370	23	2.1	23	92	4	78	55	14	14	14	1.70
1221364--1221402	21	1.9	19	85	10	51	74	2	23	0	0.94
1222396--1222445	25	2.1	23	85	10	66	60	14	12	14	1.60
1223672--1223714	23	1.9	21	81	13	50	32	18	13	34	1.90
1225398--1225442	23	1.9	24	95	4	83	26	15	17	40	1.90
1225396--1225448	23	2.2	24	83	3	81	30	15	15	39	1.87
1227693--1227747	24	2.3	24	93	0	92	61	14	12	10	1.56
1227707--1227755	24	2.0	24	84	0	62	65	12	14	8	1.47
1230250--1230274	12	2.1	12	100	0	50	36	16	24	24	1.94
1239371--1239411	2	20.5	2	100	0	82	48	0	0	51	1.00
1242481--1242518	18	2.1	19	85	9	53	39	18	5	36	1.73
1244210--1244275	17	3.8	18	82	7	66	45	7	10	36	1.67
1244210--1244275	34	1.9	34	81	6	80	45	7	10	36	1.67
1249988--1250189	105	1.9	105	94	0	359	40	20	22	16	1.91
1250383--1250555	90	1.9	89	91	1	283	38	10	7	43	1.67
1251906--1251942	14	2.4	16	86	8	51	13	13	0	72	1.11
1255270--1255320	23	2.1	23	86	13	68	7	17	3	70	1.27
1255605--1255640	15	2.4	15	86	13	56	63	0	16	19	1.30
1257553--1257602	14	3.9	13	73	21	52	78	2	20	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1257547--1257602	19	3.1	18	82	17	71	78	1	19	0	0.84
1257547--1257602	11	4.7	11	74	21	51	78	1	19	0	0.84
1267705--1267757	20	2.5	22	76	17	67	24	1	5	67	1.22
1268501--1268534	11	3.3	11	92	8	54	79	8	0	11	0.94
1279487--1279542	24	2.3	24	75	6	60	23	26	17	32	1.97
1281975--1282019	21	2.3	19	84	7	54	2	11	4	82	0.91
1282401--1282468	35	1.9	36	90	3	111	23	1	38	36	1.64
1282401--1282480	35	2.3	35	86	2	106	26	1	37	35	1.65
1286476--1286518	23	2.0	22	86	9	61	2	13	2	81	0.89
1286918--1286981	13	5.4	12	77	18	64	26	4	35	32	1.77
1286900--1287018	35	3.4	35	91	2	177	26	4	36	31	1.76
1289812--1289846	13	2.7	13	100	0	70	31	37	22	8	1.85
1290760--1290821	27	2.3	27	81	10	72	61	11	16	11	1.57
1294787--1294848	27	2.2	28	78	13	74	59	11	17	11	1.60
1304052--1304091	22	1.9	22	90	10	66	45	10	20	25	1.81
1305211--1305253	23	1.9	21	81	13	50	34	13	18	32	1.90
1306515--1306579	28	2.3	28	81	7	78	7	16	13	61	1.54
1308836--1308893	13	4.7	13	70	12	50	32	1	39	25	1.66
1308779--1308894	35	3.3	35	87	4	162	32	3	37	25	1.73
1312451--1312483	17	1.9	17	93	0	57	36	0	33	30	1.58
1312774--1312817	12	3.6	12	78	6	52	2	11	9	77	1.08
1313184--1313299	35	3.3	35	87	2	171	31	3	37	26	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1318443--1318484	11	4.1	10	81	12	50	21	35	11	30	1.90
1319862--1319886	13	1.9	13	100	0	50	64	8	16	12	1.49
1320759--1320892	20	6.7	19	73	13	90	36	25	15	22	1.94
1320759--1320892	60	2.2	60	82	6	155	36	25	15	22	1.94
1320800--1320917	40	2.9	39	85	9	141	36	22	18	22	1.95
1321446--1321640	20	9.7	19	76	10	167	19	15	24	40	1.90
1321444--1321624	40	4.5	40	77	12	199	19	16	23	40	1.91
1321415--1321621	60	3.4	61	77	5	179	21	15	23	39	1.92
1321412--1321561	60	2.5	61	81	6	180	21	15	26	37	1.93
1321443--1321642	101	2.0	100	81	9	237	20	16	24	40	1.91

Tables:   1   2   3   4   5   6   7   8   9