genome.fa.s7930.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007930.1 Hibiscus syriacus cultivar Beakdansim tig00110338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2280901

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  4  of  12  ( 1413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511576--511729	19	8.8	19	72	17	118	10	20	21	47	1.80
511581--511670	30	2.8	33	86	10	141	11	21	20	47	1.80
513780--513875	19	5.5	18	79	20	107	42	17	23	15	1.88
513796--513854	30	1.9	32	93	6	104	45	18	22	13	1.84
513780--513892	49	2.2	50	86	12	160	42	17	24	15	1.88
513888--514105	53	4.1	52	87	10	302	14	22	17	45	1.84
513882--514091	72	2.9	71	84	8	255	15	22	17	45	1.85
516369--516393	12	2.1	12	100	0	50	0	28	0	72	0.86
517296--517486	20	9.6	20	86	4	233	20	17	25	36	1.95
517473--517524	20	2.6	20	81	6	61	11	17	26	44	1.83
517924--517962	21	1.9	20	89	5	60	58	0	0	41	0.98
520742--520780	12	3.1	12	82	13	51	28	15	23	33	1.95
520890--520919	15	2.0	15	100	0	60	33	0	13	53	1.40
521705--521734	10	3.0	10	95	0	51	53	20	26	0	1.46
522252--522278	14	1.9	14	100	0	54	40	0	7	51	1.30
523341--523400	14	4.4	14	79	8	52	15	11	15	58	1.64
523359--523397	12	3.1	12	85	7	51	12	15	15	56	1.68
523580--523635	23	2.4	23	87	0	85	10	12	19	57	1.64
524627--524696	20	3.5	19	69	19	61	22	24	21	31	1.98
524568--524710	41	3.5	41	88	0	214	23	21	25	29	1.99
531130--531189	19	2.9	20	78	9	59	16	26	31	25	1.96
537375--537426	20	2.6	20	75	6	52	34	13	26	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537858--537928	30	2.4	30	86	4	92	29	5	23	40	1.78
544751--544829	30	2.6	30	87	0	104	30	6	22	40	1.79
549279--549320	21	2.0	21	90	9	68	35	9	9	45	1.69
549484--549529	21	2.2	20	85	7	65	26	10	17	45	1.81
549191--550901	197	8.5	199	82	6	1778	38	13	13	33	1.85
550473--550528	21	2.7	21	88	0	85	25	12	14	48	1.78
550277--550728	220	2.0	221	87	2	658	36	13	15	34	1.86
550686--550726	21	1.9	22	90	5	66	34	12	9	43	1.75
550495--550901	199	2.0	197	82	5	489	38	14	14	33	1.85
551114--551505	118	3.4	116	70	13	324	31	15	14	39	1.87
551088--551696	226	2.7	225	87	3	843	32	14	13	38	1.86
556742--556776	14	2.6	13	91	8	61	34	22	25	17	1.96
559498--559534	19	1.9	19	88	0	56	27	35	16	21	1.94
568206--568296	46	2.0	46	86	2	130	28	24	17	29	1.97
573238--573284	24	2.0	24	100	0	94	38	12	19	29	1.89
573820--573882	27	2.4	27	92	5	103	11	23	12	52	1.71
576249--576386	20	6.7	21	69	9	61	36	24	17	21	1.94
576353--576602	20	12.5	20	84	5	222	37	24	17	20	1.93
577283--577329	24	2.0	24	87	8	69	25	14	21	38	1.92
579708--579981	33	7.8	34	76	15	240	45	17	22	14	1.85
579722--579981	19	14.7	19	79	17	310	45	17	22	14	1.85
579952--580067	53	2.2	52	86	3	160	18	23	18	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
579971--580087	53	2.2	53	98	1	227	13	23	17	44	1.85
579990--580087	19	5.4	19	84	13	143	14	22	17	45	1.84
580194--580229	14	2.6	14	86	4	56	47	22	0	30	1.52
582201--582257	14	3.7	14	77	20	60	45	22	21	10	1.82
582182--582273	33	2.8	33	93	1	159	46	21	20	10	1.81
582145--582278	19	7.6	19	77	16	119	45	23	19	11	1.82
582274--582402	19	7.3	19	73	17	116	9	17	27	45	1.78
582274--582365	33	2.8	33	91	3	141	8	18	27	45	1.78
582446--582919	93	5.1	93	99	0	930	45	18	12	22	1.83
584626--584715	14	5.7	14	74	23	81	42	23	25	8	1.83
584618--584732	33	3.5	33	95	0	212	45	20	24	9	1.81
584625--584737	19	6.8	18	72	23	88	43	22	24	9	1.83
584733--584791	19	3.4	18	71	22	54	8	18	27	45	1.78
584733--584813	33	2.5	33	91	0	126	7	22	23	46	1.76
584789--584866	41	1.9	41	94	0	138	11	26	16	44	1.82
584790--584865	21	3.7	21	82	3	100	10	26	17	46	1.80
584945--585015	33	2.2	33	89	0	106	47	16	23	11	1.79
585197--585251	22	2.5	22	81	0	74	20	16	40	23	1.91
585397--585590	20	9.6	20	82	5	221	19	19	25	35	1.95
585397--585590	60	3.2	60	83	0	253	19	19	25	35	1.95
585577--585659	21	4.0	21	73	6	78	25	16	24	33	1.96
585557--585655	42	2.4	43	77	11	100	21	18	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587258--587403	76	2.0	72	91	5	238	35	13	15	35	1.87
592650--592691	3	14.7	3	85	9	61	33	0	2	64	1.07
594139--594231	21	4.6	20	77	4	87	39	17	24	18	1.91
594156--594231	21	3.7	21	80	3	100	40	18	25	15	1.90
594139--594231	41	2.3	41	98	0	177	39	17	24	18	1.91
594158--594292	41	3.3	41	82	6	132	38	20	21	19	1.94
594217--594267	20	2.5	20	77	3	57	45	19	15	19	1.86
594853--594997	20	7.7	19	80	11	147	12	21	22	43	1.86
594853--594927	39	1.9	39	86	5	107	9	20	26	44	1.81
596995--597117	42	2.9	42	80	2	122	22	36	17	22	1.95
597051--597117	21	3.2	21	66	6	55	23	35	20	19	1.95
598467--598502	14	2.6	14	95	0	63	30	0	25	44	1.54
598681--598831	19	8.7	19	64	21	80	15	22	20	41	1.89
598685--598811	33	3.9	32	87	8	193	14	22	19	42	1.88
598678--598810	66	2.0	66	97	0	248	16	22	19	41	1.90
601102--601126	12	2.1	12	100	0	50	0	28	0	72	0.86
601301--601354	24	2.2	24	90	0	81	38	20	16	24	1.92
602414--602471	20	2.9	20	94	0	98	37	22	22	17	1.93
602495--602581	14	5.5	14	71	24	66	12	21	20	44	1.85
602490--602600	33	3.4	33	93	2	163	13	23	21	41	1.89
602535--602602	19	3.8	19	72	18	74	14	23	23	38	1.92
604588--604654	19	3.5	19	81	4	80	38	22	23	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
604569--604686	20	6.4	19	74	13	86	42	23	20	13	1.88
604643--604700	14	3.9	14	79	16	71	48	25	17	8	1.75
604627--604705	32	2.4	33	95	2	142	46	24	18	10	1.80
604734--604791	14	3.9	14	79	16	71	10	17	24	48	1.78
604717--604807	32	2.8	33	94	3	166	12	18	21	47	1.81
604792--604846	20	2.8	19	83	8	65	16	23	23	36	1.94
605319--605364	18	2.6	18	89	0	74	13	15	43	28	1.83
607215--607267	20	2.7	20	93	0	88	24	18	28	28	1.98
607195--607309	20	5.7	20	76	5	79	23	18	23	34	1.96
607298--607390	41	2.3	41	96	0	132	17	25	17	39	1.91
607298--607390	20	4.6	20	78	4	96	17	25	17	39	1.91
607826--608029	98	2.1	98	79	12	222	36	10	9	44	1.71
611380--611408	15	1.9	15	100	0	58	27	20	10	41	1.85
619122--619209	20	4.2	20	84	10	97	31	6	4	56	1.46
619122--619203	41	2.0	43	85	9	116	30	7	3	58	1.43
620335--620626	113	2.6	113	87	2	401	38	15	18	27	1.91
620698--620761	20	3.2	20	63	20	53	42	9	23	25	1.84
620625--620856	121	1.9	122	86	3	333	40	14	18	25	1.89
622762--622965	98	2.1	96	78	15	204	37	10	8	43	1.70
631733--631828	29	3.2	29	66	21	72	35	16	3	44	1.64
631723--631862	60	2.3	60	82	2	174	31	18	7	42	1.77
632010--632158	60	2.5	59	81	5	158	46	2	17	34	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632716--632755	20	2.1	20	90	9	66	52	10	20	17	1.72
634827--634866	21	1.9	21	85	10	55	35	17	20	27	1.95
634848--634912	24	2.7	24	95	0	112	43	10	9	36	1.72
635387--635448	29	2.2	27	83	16	74	56	22	6	14	1.61
649048--649099	23	2.3	23	86	0	68	19	26	23	30	1.98
649098--649186	24	3.7	24	89	0	124	20	19	24	35	1.95
652724--652755	14	2.3	14	94	0	55	28	25	43	3	1.69
655882--655920	17	2.4	17	86	4	53	17	5	0	76	0.96
658500--658547	23	2.1	23	92	0	78	10	43	20	25	1.83
670721--670769	25	2.0	25	91	0	80	57	0	6	36	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12