genome.fa.s7930.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007930.1 Hibiscus syriacus cultivar Beakdansim tig00110338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2280901

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  6  of  12  ( 1413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
867861--867912	21	2.4	22	74	6	61	36	19	25	19	1.95
868686--868766	23	3.7	23	80	8	105	24	22	24	28	1.99
874175--874280	45	2.3	45	82	4	115	30	18	20	30	1.97
875697--875741	9	5.2	8	82	12	54	15	4	0	80	0.87
875701--875748	17	3.0	16	80	17	55	14	6	0	79	0.92
875697--875747	26	2.0	25	88	3	75	13	5	0	80	0.89
875699--875753	26	2.2	25	83	3	65	18	5	0	76	0.97
882046--882329	37	8.1	37	81	14	361	45	2	7	44	1.47
882075--882139	31	2.0	33	91	5	107	50	6	6	36	1.52
882154--882217	26	2.5	26	97	0	119	45	1	7	45	1.42
882084--882288	100	2.1	96	89	7	306	47	2	7	41	1.47
882217--882266	26	1.9	26	84	8	66	48	2	8	42	1.44
882367--882426	27	2.2	27	85	8	77	15	6	0	78	0.95
883578--883611	12	2.8	12	90	4	50	23	2	0	73	0.97
886144--886396	131	1.9	134	88	2	386	32	20	18	27	1.96
886319--886484	44	3.8	44	84	0	188	28	19	21	30	1.98
886321--886484	88	1.9	88	85	0	229	28	20	21	30	1.98
886913--886954	21	2.0	20	86	4	57	47	14	19	19	1.82
886889--887018	66	2.0	67	89	4	201	36	14	23	24	1.93
887066--887456	39	10.6	36	75	13	162	38	16	18	26	1.92
887211--887472	39	6.8	39	86	1	341	35	19	19	26	1.95
887451--887670	76	2.9	76	83	9	281	38	16	15	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
887475--887712	76	3.1	74	81	9	284	39	15	14	30	1.88
887425--887727	151	2.0	146	81	7	351	37	16	15	30	1.89
894984--895050	31	2.2	29	81	5	71	61	1	7	29	1.32
898912--898946	17	2.1	17	88	0	52	34	11	17	37	1.85
902501--902554	16	3.4	16	72	10	56	22	25	18	33	1.97
903903--903944	15	2.8	15	85	7	59	42	9	19	28	1.82
904043--904135	21	4.3	21	70	17	66	24	16	25	33	1.96
904065--904150	44	2.0	44	92	0	145	27	17	24	30	1.97
905093--905127	18	1.9	18	94	0	61	28	37	17	17	1.92
906838--906873	18	2.0	18	88	0	54	38	0	16	44	1.48
906978--907016	15	2.6	15	79	0	51	38	12	7	41	1.72
906978--907046	27	2.4	28	83	9	77	40	7	7	44	1.60
906989--907074	30	3.0	28	81	10	86	39	4	8	47	1.54
907025--907074	16	3.2	16	80	11	59	42	2	8	48	1.44
907049--907085	18	2.1	18	89	0	56	35	2	10	51	1.51
907305--907370	34	2.0	33	88	11	100	10	3	34	51	1.52
908390--908423	15	2.3	15	90	5	52	52	2	2	41	1.31
908405--908457	27	2.0	27	92	0	88	50	5	5	37	1.50
908595--908654	32	2.0	29	87	9	84	41	5	3	50	1.41
908658--908704	24	2.0	24	87	8	69	44	6	6	42	1.55
908729--908820	19	4.6	20	72	17	73	41	2	7	48	1.43
908844--908886	22	2.1	19	83	12	50	37	4	9	48	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
908871--908910	15	2.7	15	88	7	55	50	2	5	42	1.37
908876--909035	34	4.7	34	77	9	116	50	2	3	43	1.33
908877--909306	7	58.6	7	69	18	97	46	3	4	46	1.38
908906--909306	2	200.0	2	69	20	216	46	2	4	46	1.37
908965--909210	11	22.3	11	68	20	56	43	2	4	49	1.39
908980--909309	41	8.0	40	69	18	159	45	2	4	47	1.36
913674--913764	44	2.1	44	100	0	182	49	2	13	35	1.54
916112--916143	17	1.9	17	93	6	57	78	0	0	21	0.76
918466--918508	2	21.5	2	100	0	86	51	0	0	48	1.00
920123--920270	75	2.0	75	95	0	269	25	25	13	36	1.92
921726--921750	2	12.5	2	100	0	50	52	0	0	48	1.00
927957--928025	23	3.0	23	91	0	102	31	24	20	23	1.98
928041--928253	103	2.1	103	96	0	390	36	23	14	25	1.92
929069--929112	20	2.2	20	95	0	79	22	27	0	50	1.50
930805--930918	57	2.0	57	100	0	228	17	24	3	54	1.59
933084--933152	23	3.0	23	82	0	93	30	24	23	21	1.99
933168--933380	103	2.1	103	94	0	381	35	23	13	26	1.92
938750--938827	23	3.3	23	82	5	95	34	23	17	24	1.96
939030--939065	18	2.0	18	100	0	72	33	33	22	11	1.89
938927--939292	121	3.0	121	96	0	669	36	24	14	24	1.93
941603--941646	20	2.2	20	95	0	79	25	27	0	47	1.52
946083--946186	12	8.7	12	69	8	50	53	17	8	20	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
946083--946188	24	4.4	24	84	0	131	53	16	9	19	1.70
949554--949584	16	1.9	16	100	0	62	58	19	12	9	1.62
949654--949698	16	2.8	16	93	0	81	55	22	13	8	1.65
950735--950788	14	4.1	14	77	18	62	51	25	14	7	1.68
950728--950781	24	2.2	24	90	0	90	53	24	12	9	1.68
952428--952501	2	37.5	2	97	2	141	50	0	0	50	1.00
954112--954187	38	2.0	40	86	5	111	26	17	21	35	1.95
958835--958868	17	2.0	17	94	0	59	35	11	26	26	1.91
962512--962592	13	6.2	13	76	0	63	28	40	27	3	1.73
962506--962573	26	2.6	26	92	0	109	26	39	29	4	1.75
965023--965064	18	2.3	18	95	0	75	9	30	21	38	1.85
971509--971553	18	2.5	18	96	0	81	15	48	6	28	1.70
975174--975237	29	2.2	30	88	2	94	48	14	12	25	1.78
989411--989447	12	3.1	12	92	7	58	40	18	16	24	1.90
1019478--1019515	17	2.3	16	86	13	51	65	7	0	26	1.19
1022735--1022778	21	2.1	21	86	0	61	18	27	15	38	1.91
1022809--1022854	20	2.3	20	92	3	76	21	17	23	36	1.94
1026324--1026402	19	4.4	19	81	15	105	49	18	18	12	1.79
1026291--1026404	52	2.2	53	90	1	176	44	21	21	13	1.85
1026343--1026437	33	2.9	33	90	0	136	47	18	23	10	1.80
1026437--1026478	19	2.2	19	86	0	57	14	19	26	40	1.89
1026446--1026512	19	3.8	19	75	18	72	10	22	22	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1026619--1026655	14	2.6	14	91	0	65	45	21	0	32	1.52
1026854--1026981	40	3.2	40	85	2	168	22	17	22	37	1.94
1026866--1026986	20	6.1	20	82	5	147	23	19	23	34	1.96
1026909--1027013	40	2.6	40	82	5	115	27	18	23	30	1.97
1030679--1030733	21	2.6	21	94	0	101	29	23	23	23	1.99
1031121--1031160	21	1.9	21	94	0	71	50	7	10	32	1.64
1032684--1032748	29	2.2	29	94	0	112	21	24	12	41	1.87
1034314--1034383	35	2.0	35	86	5	97	30	20	30	20	1.97
1034614--1034674	22	2.8	22	87	0	86	27	21	24	26	1.99
1039991--1040070	41	2.0	41	92	0	133	38	20	20	21	1.93
1040002--1040077	22	3.6	22	68	10	68	38	23	21	17	1.93
1039993--1040235	40	6.0	42	79	10	150	41	20	22	15	1.89
1040034--1040235	20	9.9	20	81	9	212	41	21	23	13	1.89
1040025--1040231	101	2.0	101	93	1	353	41	21	22	14	1.89
1040082--1040231	81	1.8	81	88	4	230	41	21	23	14	1.89
1040211--1040265	28	2.0	28	82	7	67	32	18	29	20	1.96
1041716--1041744	2	14.5	2	100	0	58	51	0	0	48	1.00
1047579--1047635	29	2.0	29	92	0	96	24	29	26	19	1.98
1048818--1048857	20	2.0	21	95	5	73	25	27	22	25	2.00
1049336--1049370	11	3.2	11	91	0	61	31	17	25	25	1.97
1050570--1050629	30	2.0	31	87	9	88	48	0	5	46	1.24
1050880--1050943	21	3.0	21	86	4	101	25	25	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1051319--1051367	25	2.0	23	81	14	55	32	2	18	46	1.60
1057153--1057216	21	3.0	21	88	4	101	23	26	23	26	2.00
1057715--1057749	11	3.2	11	95	0	61	28	20	28	22	1.98
1058441--1058551	46	2.4	46	96	0	204	35	1	18	45	1.60
1058596--1058680	44	1.9	44	90	4	136	38	1	14	45	1.52
1058595--1058690	44	2.2	45	83	5	124	40	1	13	44	1.51
1058900--1058939	21	1.9	21	100	0	80	27	0	15	57	1.38
1059115--1059192	30	2.5	32	83	10	99	44	0	7	47	1.31
1061512--1061650	35	3.9	35	78	15	126	42	10	1	46	1.46
1061588--1061676	23	3.7	23	84	10	115	41	7	1	49	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12