genome.fa.s7930.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007930.1 Hibiscus syriacus cultivar Beakdansim tig00110338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2280901

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  8  of  12  ( 1413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1240703--1240908	104	2.0	104	97	0	385	16	17	20	44	1.87
1241793--1241820	14	2.0	14	100	0	56	14	28	14	42	1.84
1244783--1244829	3	15.3	3	95	4	85	2	65	0	31	1.04
1246702--1246888	25	7.4	25	92	3	288	26	16	20	36	1.94
1252212--1252372	25	6.4	25	91	4	238	25	16	21	37	1.93
1252212--1252372	50	3.2	50	91	5	263	25	16	21	37	1.93
1252212--1252372	75	2.1	75	93	2	270	25	16	21	37	1.93
1265972--1266000	1	29.0	1	100	0	58	100	0	0	0	0.00
1282189--1282231	19	2.3	19	84	8	52	32	11	4	51	1.59
1283745--1283807	25	2.7	23	79	13	58	36	9	0	53	1.33
1291477--1291604	63	2.0	64	96	1	240	39	7	15	37	1.75
1297726--1297765	20	2.0	20	100	0	80	20	20	35	25	1.96
1297790--1297923	65	2.1	65	90	1	207	23	17	26	31	1.97
1303944--1304003	20	3.0	20	82	4	84	30	31	21	16	1.96
1307886--1307951	22	3.0	21	80	8	78	22	16	12	48	1.79
1309793--1309833	20	2.0	20	100	0	82	19	29	19	31	1.96
1315184--1315223	21	1.9	21	89	0	62	10	25	40	25	1.86
1315204--1315266	20	2.9	21	79	9	65	15	25	34	23	1.95
1319074--1319113	21	1.9	21	85	10	55	35	10	2	52	1.48
1337279--1337304	3	8.7	3	100	0	52	65	0	34	0	0.93
1338276--1338309	16	2.1	16	100	0	68	23	14	11	50	1.76
1339247--1339302	29	1.9	29	100	0	112	32	8	21	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1340368--1340429	3	20.0	3	83	6	79	37	0	0	62	0.95
1341885--1342122	120	2.0	119	82	4	293	37	8	9	44	1.67
1342086--1342140	27	2.0	27	86	6	76	47	1	0	50	1.11
1342112--1342202	47	1.9	47	82	4	112	45	2	5	47	1.38
1342637--1342716	3	25.7	3	74	22	60	28	1	0	70	0.96
1342635--1342725	8	11.0	8	71	26	66	27	1	1	70	1.01
1342636--1342696	24	2.6	23	85	14	81	26	0	0	73	0.83
1342636--1342696	13	5.2	12	78	21	67	26	0	0	73	0.83
1342658--1342704	13	3.9	12	83	10	53	27	2	0	70	0.99
1347265--1347308	2	22.0	2	100	0	88	50	0	0	50	1.00
1347613--1347671	17	3.4	18	81	9	70	81	5	13	0	0.85
1347619--1347657	8	4.6	8	81	12	51	87	7	5	0	0.68
1347606--1347665	23	2.7	21	82	10	57	81	5	13	0	0.84
1347620--1347677	14	4.3	14	78	6	57	81	5	13	0	0.86
1347613--1347671	26	2.3	26	82	11	86	81	5	13	0	0.85
1349944--1350167	114	2.0	114	94	0	394	33	15	20	30	1.94
1351277--1351447	76	2.3	75	81	3	182	31	14	22	30	1.94
1352777--1352853	22	3.5	22	90	0	127	35	11	12	40	1.80
1353368--1353697	167	2.0	168	91	4	540	35	13	12	39	1.82
1353700--1354427	76	9.6	76	95	0	1287	24	19	21	34	1.97
1353700--1354429	305	2.4	304	95	0	1318	24	19	21	34	1.97
1354362--1354508	45	3.3	44	90	3	222	24	20	18	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1354642--1354709	3	22.0	3	88	5	100	36	0	0	63	0.95
1356262--1356303	20	2.2	19	86	4	57	33	0	2	64	1.07
1356158--1356395	120	2.0	119	83	4	302	38	7	8	46	1.62
1356359--1356413	27	2.0	27	89	6	85	49	1	0	49	1.11
1356385--1356475	47	1.9	47	82	4	112	46	2	5	46	1.38
1361269--1361305	9	4.0	9	89	3	56	0	16	0	83	0.64
1368167--1368216	26	2.0	25	92	4	82	54	4	6	36	1.44
1368232--1368260	2	14.5	2	100	0	58	48	0	0	51	1.00
1374714--1374819	52	2.1	49	81	13	117	39	4	21	33	1.74
1393796--1393835	21	1.9	21	94	0	71	40	7	0	52	1.30
1393896--1393948	27	2.0	27	88	7	81	62	5	3	28	1.35
1397202--1397231	15	2.0	15	93	0	51	63	0	0	36	0.95
1397842--1397871	15	2.0	15	93	0	51	63	0	0	36	0.95
1396945--1398229	640	2.0	640	100	0	2570	51	10	8	30	1.65
1399003--1399077	30	2.5	30	93	0	123	29	0	37	33	1.58
1399342--1399995	44	14.7	44	69	6	341	29	21	20	28	1.98
1399333--1399969	133	4.8	133	90	3	1001	29	21	20	28	1.98
1406977--1407009	15	2.2	15	100	0	66	33	21	15	30	1.94
1412659--1412744	30	2.9	30	89	1	129	26	0	43	30	1.55
1413336--1413917	139	4.2	139	86	3	798	24	19	21	34	1.96
1413255--1413914	275	2.4	274	85	5	894	23	19	22	34	1.97
1413891--1413929	19	2.1	19	85	0	51	30	10	7	51	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1413997--1414069	34	2.1	34	89	0	110	35	6	6	50	1.56
1414573--1414639	21	3.2	20	80	16	73	29	20	26	22	1.99
1416250--1416297	23	2.0	24	84	4	62	64	0	0	35	0.94
1416415--1416510	30	3.3	30	73	11	74	58	0	0	41	0.98
1423516--1423653	73	1.9	73	90	3	224	27	1	12	58	1.42
1429013--1429113	34	2.8	36	81	13	127	29	13	11	44	1.80
1429662--1430639	105	9.3	105	91	2	1466	22	17	26	33	1.96
1431241--1431563	65	4.8	65	72	11	202	39	11	20	29	1.87
1431242--1431634	65	5.7	67	73	12	180	39	11	19	29	1.87
1431374--1431654	36	8.0	35	77	12	254	40	13	18	26	1.89
1431322--1431635	138	2.3	137	83	2	398	40	13	19	27	1.88
1431410--1431656	101	2.4	103	83	9	297	40	14	18	27	1.89
1431524--1431704	36	5.1	35	77	9	152	40	14	18	26	1.89
1432133--1432168	18	2.0	18	88	0	54	41	30	8	19	1.81
1432583--1432653	22	3.2	22	97	0	133	28	14	22	35	1.93
1433291--1433364	23	3.2	22	72	14	60	1	13	8	77	1.06
1433311--1433380	8	9.1	7	77	20	61	0	15	7	77	0.98
1433305--1433359	16	3.4	17	78	7	53	0	16	9	74	1.06
1436552--1436586	16	2.1	18	89	10	56	65	0	8	25	1.21
1436596--1436647	20	2.7	20	75	3	61	67	1	5	25	1.23
1436695--1436727	2	16.5	2	100	0	66	51	0	0	48	1.00
1437173--1437270	34	2.8	35	83	10	128	29	14	12	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1440076--1440136	29	2.1	30	81	9	72	11	24	16	47	1.79
1450817--1450890	19	3.9	19	86	8	107	44	10	22	21	1.83
1454957--1455012	18	3.1	18	82	12	78	48	10	21	19	1.79
1462502--1462549	24	2.0	24	100	0	96	29	29	8	33	1.86
1462894--1462952	29	2.2	26	76	21	68	25	11	8	54	1.65
1463050--1463112	23	3.0	20	71	15	63	26	4	15	52	1.63
1480508--1480556	22	2.3	22	92	3	82	26	2	4	67	1.19
1481160--1481212	17	3.1	17	81	10	63	66	0	0	33	0.92
1481219--1481252	2	17.5	2	93	6	61	52	0	0	47	1.00
1481841--1481870	15	1.9	16	93	6	53	43	3	0	53	1.17
1481827--1481870	21	2.1	21	83	8	54	43	2	0	54	1.12
1484843--1484900	22	2.7	21	81	2	71	58	18	8	13	1.61
1488801--1488958	60	2.6	59	82	4	183	32	21	4	41	1.73
1489085--1489260	60	2.9	58	80	6	176	41	7	19	31	1.79
1489248--1489398	73	2.0	74	91	2	241	46	5	14	33	1.67
1496159--1497126	81	11.9	81	86	3	1131	35	23	19	21	1.96
1496214--1497126	488	1.9	485	83	3	1188	34	23	19	21	1.96
1501145--1501276	63	2.1	62	80	8	142	30	18	20	31	1.96
1503960--1504040	23	3.6	22	75	14	85	27	24	23	24	2.00
1503963--1504059	44	2.2	44	83	10	119	27	21	23	26	1.99
1505050--1505695	322	2.0	324	97	0	1215	32	19	12	35	1.89
1510138--1510298	65	2.5	65	84	5	229	28	18	22	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1510139--1510339	65	3.1	63	74	14	178	27	19	22	30	1.98
1511013--1511055	22	2.0	22	90	0	68	37	23	18	20	1.94
1511219--1511273	23	2.3	24	84	9	69	49	27	1	21	1.60
1516624--1516682	23	2.7	21	80	10	73	30	27	23	18	1.98
1516903--1516961	30	2.0	30	87	12	86	37	23	1	37	1.65
1517303--1517440	64	2.2	64	81	3	154	26	17	21	35	1.95
1523440--1523500	23	2.7	23	86	0	95	27	26	24	21	1.99
1523723--1523783	31	2.0	30	84	9	79	37	22	1	37	1.65
1525390--1525414	12	2.1	12	100	0	50	32	16	16	36	1.90
1531233--1531394	64	2.5	63	85	6	211	32	19	24	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12