genome.fa.s7936.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007936.1 Hibiscus syriacus cultivar Beakdansim tig00110346_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2869312

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1292 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2584275--2584351	38	2.0	38	92	0	127	29	23	11	35	1.90
2594150--2594275	47	2.8	45	83	5	155	40	7	22	29	1.82
2595843--2595885	6	7.2	6	89	0	59	16	13	34	34	1.88
2602570--2602614	18	2.5	18	96	0	81	44	15	6	33	1.73
2604856--2605001	48	3.0	48	76	11	147	23	21	17	37	1.94
2604859--2605025	24	6.9	24	75	6	115	23	22	16	37	1.93
2605006--2605143	24	5.8	24	75	11	131	24	19	14	41	1.89
2606274--2606422	64	2.3	64	80	10	169	44	3	8	42	1.51
2618009--2618125	60	2.0	60	82	3	146	29	17	25	28	1.97
2625189--2625248	30	2.0	31	83	3	77	28	10	6	55	1.58
2626156--2626192	19	1.9	19	88	0	56	40	10	8	40	1.70
2628386--2628419	16	2.2	15	89	5	50	41	0	8	50	1.34
2636819--2636862	6	7.2	6	80	14	54	79	2	18	0	0.83
2636819--2636862	13	3.6	12	79	14	54	79	2	18	0	0.83
2638626--2638694	29	2.3	32	76	18	76	15	27	1	55	1.50
2643957--2644005	20	2.5	20	89	0	71	12	16	18	53	1.73
2643957--2644015	20	3.0	20	82	0	55	11	15	22	50	1.76
2644001--2644051	23	2.2	23	82	0	66	9	23	19	47	1.79
2656300--2656351	20	2.6	20	93	0	86	11	17	23	48	1.79
2656300--2656358	20	3.0	20	89	0	73	11	16	23	47	1.80
2656345--2656388	23	1.9	23	95	0	79	9	20	20	50	1.75
2656344--2656394	23	2.2	23	85	0	75	9	23	17	49	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2667198--2667228	14	2.2	14	94	0	53	32	35	0	32	1.58
2668980--2669244	44	6.0	44	90	0	395	33	18	6	40	1.77
2669502--2669818	59	5.4	59	82	3	255	29	22	10	37	1.87
2669440--2669818	118	3.2	117	83	4	368	29	22	10	37	1.88
2669542--2669880	177	2.0	168	83	7	421	31	21	10	36	1.87
2669766--2669868	50	2.1	50	88	0	152	31	19	9	39	1.84
2672518--2672561	22	2.0	22	100	0	88	31	40	4	22	1.74
2673860--2673896	2	18.5	2	100	0	74	48	0	0	51	1.00
2674316--2674392	8	9.9	8	68	16	54	55	3	0	40	1.18
2674328--2674391	23	2.8	23	95	0	110	54	4	0	40	1.21
2676808--2676877	18	4.0	17	74	9	61	38	17	7	37	1.77
2676806--2676877	35	2.0	36	83	2	92	37	16	8	37	1.79
2679733--2679858	47	2.8	45	83	5	155	30	21	7	40	1.80
2679963--2680044	40	2.0	40	95	0	146	32	26	17	23	1.96
2686478--2686587	47	2.4	44	84	4	130	32	20	7	40	1.80
2688934--2688970	7	5.3	7	90	0	56	35	0	24	40	1.55
2688934--2688980	14	3.3	14	84	3	58	38	0	23	38	1.55
2703658--2703699	14	3.0	14	86	10	59	0	19	2	78	0.86
2703736--2703775	12	3.3	12	92	0	71	15	35	7	42	1.75
2703989--2704034	6	8.3	6	88	11	64	54	0	32	13	1.39
2705442--2705485	13	2.8	17	70	25	51	4	34	0	61	1.16
2705442--2705503	30	2.1	30	87	0	88	6	32	0	61	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2705509--2705547	14	2.8	14	80	0	51	12	30	0	56	1.37
2705488--2705547	28	2.1	29	87	9	88	13	28	0	58	1.36
2705523--2705564	22	2.0	21	95	4	75	14	38	2	45	1.58
2708164--2708211	2	24.0	2	100	0	96	50	0	0	50	1.00
2709514--2709566	21	2.5	22	78	12	65	26	0	13	60	1.33
2711041--2711129	34	2.5	35	89	5	135	21	34	25	17	1.96
2711242--2711282	20	2.0	21	90	4	66	24	21	26	26	2.00
2711311--2711350	20	1.9	21	85	10	55	37	37	10	15	1.80
2711565--2711634	34	2.1	32	84	5	86	35	15	25	22	1.94
2713916--2713999	33	2.5	34	88	3	125	20	34	25	20	1.96
2713943--2713998	15	3.5	15	71	21	51	19	35	21	23	1.96
2714112--2714152	20	2.0	21	90	4	66	24	21	26	26	2.00
2714435--2714504	34	2.1	32	84	5	86	31	15	28	24	1.96
2715332--2715463	47	2.9	44	82	9	158	31	21	6	40	1.77
2717975--2718015	7	5.9	7	85	0	55	24	0	29	46	1.53
2717975--2718019	21	2.1	21	91	0	72	24	0	26	48	1.51
2717983--2718015	14	2.4	14	100	0	66	21	0	30	48	1.50
2717983--2718019	7	5.3	7	90	0	56	21	0	27	51	1.48
2727976--2728062	45	1.9	45	90	0	138	35	9	24	31	1.87
2735535--2735714	64	2.8	61	79	13	182	27	16	26	29	1.97
2735662--2735712	19	2.7	19	85	8	70	25	15	35	23	1.94
2735556--2735714	65	2.5	65	87	3	214	27	16	25	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2735556--2735763	65	3.2	64	82	8	210	26	17	25	30	1.97
2736092--2736170	30	2.6	31	87	4	115	31	34	2	31	1.71
2740594--2740640	20	2.2	21	78	17	53	44	6	12	36	1.68
2742818--2742868	19	2.7	19	85	8	70	25	15	35	23	1.94
2742710--2742919	65	3.2	66	80	11	195	27	17	24	30	1.97
2764148--2764191	16	2.8	16	96	0	79	68	0	13	18	1.22
2764901--2764945	22	2.0	23	86	4	65	53	11	6	28	1.61
2766277--2766554	150	1.9	150	82	1	351	28	16	16	38	1.90
2766549--2766581	17	1.9	17	93	0	57	21	24	12	42	1.86
2767921--2767958	20	1.9	20	88	0	58	44	13	10	31	1.77
2782861--2782934	28	2.6	29	82	8	89	33	16	24	25	1.95
2782861--2782932	29	2.5	30	84	8	87	33	15	25	26	1.95
2796985--2797044	19	3.2	19	88	6	79	75	1	21	1	0.99
2796984--2797044	27	2.1	29	85	8	81	75	1	21	1	0.98
2807363--2807407	22	2.2	20	88	8	63	28	2	35	33	1.70
2814574--2814603	10	3.0	10	95	0	51	43	10	26	20	1.83
2827028--2827058	15	2.1	14	94	5	53	77	3	19	0	0.90
2837851--2837907	11	5.3	11	82	4	71	1	1	14	82	0.83
2837851--2837907	21	2.7	21	83	2	69	1	1	14	82	0.83
2837880--2837907	12	2.3	12	100	0	56	0	0	7	92	0.37
2842745--2842796	26	2.0	26	96	0	95	42	15	17	25	1.88
2854368--2854410	19	2.2	20	87	4	61	48	6	9	34	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2856640--2856693	23	2.3	24	87	3	83	62	11	16	9	1.52
2856640--2856699	24	2.6	23	81	7	77	63	10	18	8	1.50
2863203--2863306	33	3.1	33	82	9	95	30	36	1	30	1.69
2868850--2868953	33	3.1	33	82	9	95	30	36	1	30	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!