genome.fa.s7936.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007936.1 Hibiscus syriacus cultivar Beakdansim tig00110346_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2869312

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1292 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276278--276373	46	2.1	45	90	1	147	37	12	16	33	1.86
276222--276413	102	1.9	102	87	2	287	38	11	17	33	1.85
276166--276469	158	1.9	158	83	1	394	38	11	17	32	1.85
281145--281231	30	2.8	31	83	10	115	19	27	28	24	1.98
281806--282206	163	2.5	163	94	0	696	26	20	17	34	1.95
285248--285318	32	2.2	32	84	0	88	19	25	29	25	1.99
289366--289396	15	2.1	15	93	0	53	51	6	9	32	1.60
295960--296414	54	8.4	54	78	6	424	31	18	17	32	1.94
302905--303282	54	7.0	54	83	3	474	32	17	18	31	1.94
303334--303368	2	17.5	2	87	0	52	48	2	0	48	1.16
306186--306213	2	14.0	2	100	0	56	50	0	0	50	1.00
306276--306300	2	12.5	2	100	0	50	48	0	0	52	1.00
310720--310791	31	2.4	30	77	11	76	40	5	15	38	1.70
312106--312480	5	75.0	5	100	0	750	40	0	20	40	1.52
318123--319502	572	2.4	579	81	7	1591	35	14	12	37	1.84
319084--320225	571	2.0	572	93	1	1957	33	16	15	34	1.91
326415--326484	34	2.1	32	86	5	95	24	28	15	31	1.96
326890--326991	20	4.9	21	79	13	120	23	17	37	21	1.94
327214--327253	21	1.9	21	89	0	62	50	10	10	30	1.69
328365--328411	20	2.4	19	82	10	51	29	14	4	51	1.62
329747--329825	21	3.7	21	88	6	106	24	20	34	21	1.97
341242--342213	490	2.0	488	87	1	1383	33	15	13	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346194--348751	590	4.4	579	80	8	2585	34	15	13	36	1.86
353094--353144	10	5.0	10	75	11	50	21	5	5	66	1.35
353105--353152	22	2.2	22	100	0	96	27	8	4	60	1.44
353568--353654	37	2.4	37	88	5	140	37	40	11	10	1.76
353834--353906	38	1.9	38	94	2	130	39	35	10	13	1.80
354081--354153	38	1.9	38	94	5	130	39	34	10	15	1.82
353520--354388	263	3.4	260	88	6	1306	36	28	12	22	1.90
354959--354986	2	14.0	2	100	0	56	0	50	0	50	1.00
356446--356497	22	2.4	22	90	0	77	40	3	9	46	1.55
359805--359854	26	2.0	25	92	4	82	54	4	6	36	1.44
360141--360174	3	11.3	3	87	0	50	2	29	29	38	1.72
360138--360174	12	3.1	12	88	0	56	5	29	27	37	1.79
362155--362197	8	5.2	8	78	15	52	65	0	0	34	0.93
362160--362225	12	5.2	12	71	20	53	68	1	0	30	0.99
362681--362766	31	2.8	31	87	7	120	26	2	10	60	1.41
371208--371239	6	5.3	6	100	0	64	15	68	15	0	1.21
371466--371545	38	2.1	39	84	9	103	51	1	1	46	1.17
371935--371972	20	1.9	20	94	0	67	47	10	23	18	1.79
371325--372571	650	1.9	653	87	2	1819	39	11	13	36	1.81
372587--372626	18	2.2	18	86	0	53	27	17	47	7	1.74
372581--372620	12	3.3	12	85	0	53	30	17	42	10	1.82
372791--372910	64	1.9	64	89	3	188	50	13	5	30	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375243--375270	13	2.2	13	100	0	56	57	10	17	14	1.65
375506--375531	11	2.4	11	100	0	52	50	15	7	26	1.71
376931--376963	17	1.9	17	93	0	57	66	0	0	33	0.92
381474--381521	17	3.0	15	77	14	51	56	27	2	14	1.50
387303--387342	21	1.9	21	85	10	55	35	10	2	52	1.48
389338--389397	22	2.8	21	87	5	84	20	25	33	21	1.97
390867--390916	14	3.6	14	83	5	57	24	22	22	32	1.98
399805--399854	21	2.5	20	75	9	50	38	20	14	28	1.91
399805--400003	104	1.9	104	82	0	245	32	19	15	32	1.93
400440--400471	12	2.7	12	95	0	55	9	28	12	50	1.71
403538--403593	29	1.9	29	85	7	78	32	21	5	41	1.76
404847--404891	19	2.5	18	82	10	56	73	4	13	8	1.23
421276--421315	19	2.1	19	90	9	64	50	2	12	35	1.54
424684--424721	19	1.9	19	89	5	58	50	5	13	31	1.63
435303--435507	34	5.4	34	65	26	108	29	23	9	37	1.87
435279--435560	79	3.6	79	94	0	483	28	23	10	37	1.88
435332--435552	45	5.4	42	65	22	123	28	23	11	35	1.90
436058--436132	19	3.7	19	70	23	55	25	25	16	33	1.95
436199--436225	14	1.9	14	100	0	54	29	18	14	37	1.91
442363--442572	79	2.7	79	91	0	341	29	24	11	34	1.91
442504--442635	64	2.1	64	98	0	255	30	25	12	31	1.93
442428--442715	143	2.0	143	93	1	488	30	23	11	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442568--442726	79	2.0	79	93	0	273	28	22	10	37	1.88
446426--446463	20	1.9	20	88	0	58	28	23	15	31	1.96
448989--449030	2	21.0	2	100	0	84	50	0	0	50	1.00
449466--449524	31	1.9	31	86	6	84	18	1	10	69	1.25
449943--450002	16	3.8	16	82	2	68	50	3	8	38	1.49
450052--450140	27	3.4	27	90	6	132	33	12	12	41	1.80
450052--450156	27	4.2	26	86	9	123	31	12	12	43	1.79
450129--450215	38	2.3	38	89	0	138	29	20	12	36	1.90
451784--451859	25	2.9	27	80	13	95	42	0	1	56	1.07
451819--451906	40	2.2	41	84	13	112	42	0	1	56	1.06
451773--451991	64	3.4	64	91	3	357	41	1	1	55	1.19
452038--452093	29	1.9	29	92	7	96	33	0	8	57	1.30
452559--452599	16	2.6	16	96	0	73	24	2	7	65	1.30
455837--455882	17	2.7	18	90	6	62	52	0	0	47	1.00
455826--455877	16	2.8	18	77	22	54	51	0	1	46	1.12
456123--456154	5	6.4	5	92	0	55	62	0	0	37	0.95
456117--456154	20	1.9	20	94	0	67	63	0	0	36	0.95
459863--459901	15	2.6	15	95	0	69	25	2	28	43	1.68
460532--460584	18	2.9	18	88	0	79	28	30	20	20	1.98
466419--466506	31	2.8	32	84	3	115	21	26	26	26	2.00
468829--468895	20	3.3	20	83	8	82	43	19	16	20	1.88
469228--469293	20	3.3	20	78	4	80	31	13	12	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469224--469299	40	1.9	40	89	5	118	30	13	11	44	1.79
469285--469343	20	2.9	19	80	9	55	18	18	20	42	1.90
469231--469312	40	2.0	40	86	4	112	30	15	12	41	1.84
469362--469678	180	1.8	173	84	9	432	25	16	19	38	1.92
469583--469614	14	2.3	14	94	0	55	34	15	25	25	1.95
469623--469706	40	2.1	40	90	0	132	22	16	15	45	1.85
469628--469699	20	3.6	20	73	14	76	22	15	16	45	1.84
469712--469758	20	2.3	20	88	0	67	25	23	17	34	1.96
469792--469847	20	2.7	21	75	8	60	21	12	26	39	1.89
469851--469904	20	2.7	20	88	0	81	22	20	18	38	1.93
470472--470561	20	4.5	20	73	12	69	22	16	17	43	1.88
473142--473172	16	1.9	16	93	0	53	22	3	12	61	1.46
475395--475520	32	4.0	31	82	5	144	19	23	27	29	1.98
475395--475515	64	1.9	64	85	0	170	18	24	28	28	1.98
476544--476625	2	41.0	2	100	0	164	50	0	0	50	1.00
477042--477088	19	2.5	19	92	0	76	19	23	21	36	1.95
479636--479823	93	2.0	93	98	0	367	25	26	21	26	2.00
480484--480527	20	2.3	19	81	11	54	34	4	0	61	1.16
482385--482419	5	7.0	5	93	0	61	0	22	0	77	0.78
486617--486643	2	13.5	2	100	0	54	48	0	0	51	1.00
487025--487056	15	2.0	17	88	11	50	18	0	6	75	1.01
491393--491430	14	2.6	15	83	8	51	7	28	0	63	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492572--492909	3	113.7	3	89	4	488	63	0	36	0	0.95
492930--492978	18	2.7	18	81	6	55	59	0	34	6	1.22
496931--497103	90	1.9	89	95	1	310	39	9	6	43	1.65
503624--503796	90	1.9	89	94	1	301	38	10	6	43	1.66
504804--505248	54	8.3	54	83	5	528	31	19	15	33	1.93
505002--505085	26	3.2	26	65	18	64	33	15	16	34	1.91
504804--505271	162	2.9	162	87	4	646	30	19	15	33	1.93
506562--506790	54	4.2	54	85	1	280	31	20	19	28	1.97
507132--507185	22	2.6	22	77	8	60	29	16	18	35	1.93
512649--512701	22	2.5	22	84	6	65	30	26	13	30	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11