genome.fa.s7936.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007936.1 Hibiscus syriacus cultivar Beakdansim tig00110346_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2869312

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  7  of  11  ( 1292 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1508122--1508152	13	2.4	13	88	0	53	38	3	19	38	1.68
1508141--1508205	29	2.2	30	86	2	87	38	0	10	50	1.37
1508193--1508269	27	2.8	28	77	13	72	31	0	5	63	1.16
1508203--1508271	15	4.4	16	75	12	72	30	0	4	65	1.12
1514536--1514718	74	2.4	74	87	7	271	22	19	27	30	1.98
1515011--1515043	12	2.6	13	85	9	50	42	6	9	42	1.61
1517431--1517504	13	5.3	13	84	15	103	16	47	22	13	1.81
1517427--1517498	31	2.3	31	100	0	144	16	50	22	11	1.77
1517444--1517485	18	2.3	18	100	0	84	16	50	23	9	1.75
1517493--1517526	15	2.3	15	94	0	59	17	35	23	23	1.95
1518829--1518864	18	2.0	18	88	0	54	52	0	16	30	1.44
1520008--1520090	23	3.6	23	82	8	96	24	16	20	38	1.93
1520023--1520097	24	3.2	24	88	1	116	25	17	21	36	1.95
1522288--1522361	13	5.3	13	81	15	94	17	47	21	13	1.82
1522288--1522376	31	3.2	26	84	11	97	17	44	21	15	1.86
1522284--1522355	31	2.3	31	97	0	135	18	50	20	11	1.77
1522324--1522393	8	9.5	8	71	25	57	17	38	22	21	1.93
1522284--1522342	18	3.6	18	78	21	83	18	50	20	10	1.75
1522350--1522383	15	2.3	15	94	0	59	17	35	23	23	1.95
1523687--1523722	18	2.0	18	88	0	54	52	0	16	30	1.44
1524867--1524949	23	3.6	23	82	8	96	24	16	20	38	1.93
1524882--1524956	24	3.2	24	88	1	116	25	17	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1529048--1529092	21	2.2	20	84	4	54	37	2	4	55	1.32
1529652--1529888	117	2.0	117	98	0	456	27	18	13	39	1.89
1531113--1531226	54	2.1	54	91	0	183	23	18	25	32	1.97
1535769--1535895	4	32.2	4	80	9	91	39	1	10	48	1.47
1535988--1536080	12	9.1	10	72	21	61	51	2	8	37	1.45
1535969--1536080	22	4.8	22	80	9	98	50	3	8	37	1.51
1535993--1536069	26	3.0	26	88	3	113	51	2	6	38	1.41
1535993--1536069	12	6.2	12	83	5	100	51	2	6	38	1.41
1536611--1536646	2	18.0	2	100	0	72	50	0	0	50	1.00
1536674--1536723	23	2.1	23	82	17	59	48	0	0	52	1.00
1536820--1536863	13	3.3	13	81	6	52	50	0	6	43	1.29
1537068--1537116	16	3.4	16	68	26	54	38	14	18	28	1.90
1537061--1537119	27	2.2	27	100	0	118	37	15	18	28	1.91
1538288--1538328	22	1.9	22	85	5	57	51	4	24	19	1.66
1538603--1538637	17	2.0	17	88	5	52	54	2	0	42	1.15
1540425--1540579	78	2.0	75	91	7	249	34	10	30	24	1.89
1545091--1545209	57	2.1	57	93	0	202	34	18	10	36	1.86
1545141--1545288	79	1.9	79	95	0	269	35	20	10	33	1.87
1545219--1545655	57	7.7	57	91	0	703	32	18	11	36	1.87
1545091--1545345	136	1.9	136	93	0	438	35	18	10	35	1.86
1545979--1546038	22	2.8	20	78	11	75	23	25	13	38	1.91
1545979--1546051	22	3.6	20	77	14	62	27	23	12	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1546076--1546148	22	3.6	21	77	16	66	24	31	16	27	1.96
1548285--1548319	2	17.5	2	100	0	70	48	0	0	51	1.00
1550030--1550069	2	20.0	2	100	0	80	50	0	0	50	1.00
1550623--1550878	57	4.5	57	91	0	422	33	17	11	36	1.86
1551218--1551273	22	2.7	20	84	15	78	23	28	16	32	1.96
1551384--1551420	19	2.0	18	94	5	65	24	21	16	37	1.93
1558483--1558509	14	1.9	14	100	0	54	29	22	18	29	1.97
1558516--1558574	23	2.8	20	76	16	64	32	18	15	33	1.92
1559067--1559100	12	2.8	12	90	4	50	38	11	5	44	1.65
1563204--1563228	11	2.3	11	100	0	50	44	0	0	56	0.99
1566752--1566783	2	16.0	2	100	0	64	50	0	0	50	1.00
1567181--1567217	19	1.9	19	94	0	65	45	8	18	27	1.77
1568293--1568368	34	2.2	34	97	0	143	52	5	26	15	1.64
1570756--1570793	20	1.9	20	94	0	67	26	15	31	26	1.96
1571120--1571221	30	3.4	30	93	0	177	35	8	25	30	1.86
1574318--1574359	15	2.7	16	82	14	52	4	14	0	80	0.86
1575610--1575660	18	2.6	21	78	18	72	35	15	17	31	1.92
1576085--1576268	54	3.4	53	89	1	242	31	14	17	35	1.91
1577235--1577268	17	2.0	17	94	0	59	26	11	29	32	1.92
1578955--1578992	20	1.9	20	88	0	58	34	0	21	44	1.52
1580239--1580268	2	15.0	2	100	0	60	50	0	0	50	1.00
1580685--1580725	13	3.2	13	89	3	66	58	0	17	24	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1581628--1581675	20	2.4	20	78	0	69	29	16	31	22	1.96
1582182--1582999	411	2.0	411	97	0	1546	37	20	11	30	1.88
1584351--1584777	56	7.7	56	85	3	544	36	10	17	35	1.84
1586484--1586547	29	2.2	30	85	2	85	37	6	23	32	1.80
1587186--1587322	59	2.3	59	83	2	195	28	18	24	28	1.98
1591371--1591802	56	7.8	56	88	2	620	36	9	17	35	1.84
1593359--1593429	20	3.5	21	79	9	67	32	14	23	29	1.94
1593759--1594186	56	7.8	56	90	3	636	34	9	19	36	1.85
1596645--1596765	38	3.3	37	78	7	122	35	14	0	48	1.50
1596996--1597029	15	2.2	16	89	5	52	29	14	17	38	1.90
1607989--1608038	23	2.2	23	85	0	64	42	8	18	32	1.79
1607953--1608201	87	2.9	87	95	0	435	42	10	14	32	1.80
1608067--1608124	23	2.5	23	88	0	89	41	6	17	34	1.76
1608242--1608720	200	2.4	200	81	4	533	31	13	14	40	1.84
1614633--1614682	24	2.1	24	84	0	64	40	22	18	20	1.92
1614674--1614773	23	4.4	23	81	3	114	37	21	20	22	1.95
1614677--1614766	46	2.0	45	86	2	126	36	20	21	22	1.95
1620189--1620261	23	3.2	23	90	0	119	30	26	26	17	1.98
1623511--1623633	44	2.8	44	81	7	135	27	19	14	38	1.91
1623695--1624209	36	14.4	36	83	4	549	28	13	9	47	1.74
1624087--1624140	17	3.4	17	69	23	53	24	11	7	57	1.58
1624087--1624146	31	1.9	31	93	0	102	21	10	8	60	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1624632--1624697	32	2.1	32	94	0	114	42	7	19	30	1.79
1625315--1625346	2	16.5	2	93	6	57	53	0	0	46	1.00
1625480--1625525	20	2.3	20	96	0	83	50	2	13	34	1.53
1627129--1627173	16	2.8	16	93	0	72	42	6	13	37	1.70
1628221--1628264	20	2.2	20	84	8	54	27	6	9	56	1.55
1637216--1637328	6	18.8	6	98	0	217	17	31	0	50	1.47
1640410--1640578	44	3.8	45	89	3	245	31	22	7	39	1.81
1640462--1640531	21	3.2	21	65	21	54	32	20	8	38	1.83
1641218--1641242	12	2.1	12	100	0	50	32	24	16	28	1.96
1641803--1641884	40	2.0	40	95	0	146	34	25	17	23	1.96
1648896--1649021	47	2.8	45	85	5	164	30	22	7	39	1.82
1649126--1649207	40	2.0	40	100	0	164	32	26	17	23	1.96
1661041--1661085	24	2.0	22	83	16	56	42	6	13	37	1.70
1664123--1664186	2	32.0	2	100	0	128	50	0	0	50	1.00
1670433--1670473	6	6.8	6	100	0	82	17	48	0	34	1.47
1671092--1671190	31	3.2	31	91	0	162	24	23	15	37	1.93
1673808--1673862	26	2.1	26	96	0	101	40	20	9	30	1.83
1676317--1676379	30	2.1	30	85	5	83	39	17	19	23	1.92
1676869--1676913	22	2.0	22	82	4	54	60	4	6	28	1.42
1680177--1680244	31	2.2	31	89	0	100	22	26	17	33	1.96
1682185--1682261	31	2.5	31	82	0	100	33	14	27	24	1.94
1688348--1688392	20	2.2	21	84	11	58	73	2	4	20	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1690799--1691374	139	4.2	139	84	0	695	25	15	28	31	1.95
1690781--1691322	277	2.0	277	85	0	742	26	15	27	30	1.96
1691556--1691768	67	3.2	67	81	6	202	37	11	17	33	1.86
1691492--1691801	133	2.3	132	79	4	313	37	11	17	33	1.86
1691592--1691801	66	3.2	67	82	4	239	38	11	16	33	1.85
1692085--1692312	67	3.4	67	79	9	243	38	13	16	32	1.87
1692216--1692517	167	1.8	167	86	5	441	38	12	16	32	1.86
1696532--1696590	29	1.9	30	86	10	84	37	3	10	49	1.54
1696346--1696804	194	2.3	198	81	5	529	37	5	9	47	1.59
1696777--1696825	22	2.2	22	96	0	89	24	4	6	65	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11