genome.fa.s7967.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007967.1 Hibiscus syriacus cultivar Beakdansim tig00110402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2476418

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1301 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172124--172179	21	2.7	20	76	17	60	19	5	3	71	1.21
176252--176296	21	2.1	21	87	0	63	31	26	26	15	1.96
177221--177298	2	39.0	2	97	0	147	50	0	1	48	1.09
178063--178103	13	3.5	13	75	25	54	21	26	26	24	2.00
178051--178116	22	3.0	22	97	0	123	21	27	27	24	1.99
189883--189922	21	1.9	21	84	0	53	5	70	2	22	1.19
191249--191347	14	7.1	14	69	8	51	46	25	2	26	1.64
191505--191543	2	19.5	2	100	0	78	48	0	0	51	1.00
193517--193618	21	4.8	21	74	13	84	23	17	27	31	1.97
199183--199226	2	22.0	2	100	0	88	50	0	0	50	1.00
200640--200675	18	2.0	18	88	0	54	19	19	30	30	1.96
210510--210573	23	2.8	23	80	0	83	31	25	25	18	1.98
213461--213529	23	3.0	23	78	0	75	21	24	24	28	1.99
217092--217134	21	2.0	21	86	0	59	32	30	23	13	1.93
218709--218776	23	3.0	23	89	4	84	22	25	25	27	1.99
220715--220784	21	3.3	21	95	0	131	22	24	22	30	1.99
224024--224354	165	2.0	165	91	2	540	23	14	17	43	1.87
228250--228778	275	1.9	276	88	1	801	24	13	21	40	1.90
230640--230670	4	7.8	4	100	0	62	22	0	0	77	0.77
237058--237123	29	2.2	29	83	5	78	33	7	27	31	1.85
237072--237127	29	2.0	28	89	3	85	33	5	23	37	1.78
242426--242466	20	2.0	20	100	0	82	29	4	24	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244101--244125	2	12.5	2	100	0	50	52	0	0	48	1.00
244125--244230	2	53.0	2	98	0	203	50	0	49	0	1.00
245417--245461	21	2.1	21	83	0	54	31	31	24	13	1.93
247014--247226	103	2.1	103	96	0	390	26	14	23	36	1.93
247242--247294	23	2.3	23	86	0	79	20	24	26	28	1.99
252115--252329	103	2.1	103	94	0	376	26	13	23	35	1.92
252348--252400	23	2.3	23	86	0	79	20	24	26	28	1.99
255096--255145	24	2.1	23	82	10	57	28	14	10	48	1.75
259600--259654	24	2.3	24	100	0	110	38	3	0	58	1.16
259600--259664	24	2.7	24	92	4	96	36	3	1	58	1.23
260259--260296	13	3.0	13	88	3	51	39	0	0	60	0.97
270386--270454	31	2.2	31	90	10	113	47	2	2	46	1.32
270405--270478	18	3.8	20	77	13	82	48	1	1	48	1.18
273077--273109	12	2.8	12	86	4	50	75	0	12	12	1.04
273111--273144	7	4.7	7	85	7	50	52	5	0	41	1.25
273138--273253	26	4.5	26	70	10	85	48	3	0	47	1.24
273141--273199	24	2.5	24	86	5	77	49	3	0	47	1.18
277427--277478	26	2.0	26	85	7	70	44	13	0	42	1.44
277473--277507	4	9.0	4	87	6	54	71	0	0	28	0.86
280669--280706	18	2.1	19	85	5	51	13	5	5	76	1.13
281703--281855	79	1.9	79	87	0	225	34	15	22	26	1.94
299339--299388	21	2.4	21	93	0	82	2	42	18	38	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300585--300635	9	5.6	9	77	13	50	33	0	1	64	1.05
301470--301502	11	3.1	11	86	4	50	45	0	0	54	0.99
301890--301927	20	2.0	20	89	5	60	28	13	34	23	1.92
303395--304455	183	5.8	183	97	0	1978	35	19	9	35	1.84
308691--308736	21	2.2	21	88	0	65	36	8	0	54	1.32
309686--309787	34	2.8	37	81	10	140	45	13	13	27	1.82
310267--310293	13	2.1	13	100	0	54	44	0	0	55	0.99
310338--310385	25	2.0	24	84	12	62	16	10	0	72	1.10
313870--313938	8	9.3	7	75	19	52	76	5	15	1	1.04
313892--313965	16	4.4	17	71	20	66	74	8	16	1	1.12
313863--313955	27	3.5	27	76	16	88	74	7	15	3	1.17
314575--314629	22	2.5	22	96	0	101	38	25	12	23	1.90
315458--315716	36	7.3	36	76	9	246	26	18	13	41	1.87
315458--315727	73	3.8	73	76	10	306	27	18	12	41	1.87
315399--315783	138	2.8	137	83	1	491	29	19	11	38	1.88
315500--315684	102	1.8	102	85	2	264	28	17	12	41	1.86
315676--315852	65	2.7	65	85	4	228	33	21	9	36	1.85
316492--316912	105	4.0	106	89	1	605	33	25	18	22	1.96
317459--317560	34	2.8	37	89	10	167	43	14	14	27	1.85
317457--317594	37	3.8	36	84	10	174	42	13	15	29	1.84
317949--317992	18	2.6	17	85	7	63	25	4	2	68	1.20
318706--318748	2	21.5	2	95	0	77	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320067--320152	43	2.0	43	100	0	172	34	20	11	32	1.89
325611--325651	21	2.0	21	90	0	64	36	7	14	41	1.74
326206--326252	2	23.5	2	100	0	94	51	0	0	48	1.00
327288--328264	330	2.9	331	91	3	1519	29	12	20	37	1.90
328143--328168	12	2.2	12	100	0	52	15	7	26	50	1.71
329045--329139	26	3.5	27	74	14	97	18	29	5	46	1.71
331070--331224	78	2.0	76	89	2	238	41	16	19	22	1.90
331759--331977	113	1.9	113	89	1	341	35	23	24	16	1.95
334084--334135	16	3.3	16	74	12	54	50	0	17	32	1.47
340058--340134	37	2.1	37	85	9	104	46	1	3	48	1.28
342907--342970	22	2.9	22	82	11	69	45	1	0	53	1.10
342892--343002	8	13.6	8	71	16	52	50	1	0	47	1.11
342914--342970	22	2.5	23	85	5	71	45	1	0	52	1.11
342960--343013	23	2.3	23	84	6	65	55	1	1	40	1.21
343024--343129	54	2.0	53	83	10	135	50	0	1	46	1.18
343155--343199	23	2.0	23	86	0	63	53	2	2	42	1.25
343301--343377	27	3.0	26	72	18	72	50	0	1	48	1.09
345765--345789	2	12.5	2	100	0	50	48	0	0	52	1.00
345815--345926	39	2.9	38	74	11	102	37	10	1	50	1.48
345974--346007	18	1.9	18	88	5	52	23	0	0	76	0.79
356536--356588	14	3.9	14	73	14	56	62	3	3	30	1.30
358274--358432	80	2.0	80	94	0	282	33	28	15	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358875--358919	23	1.9	24	90	4	74	66	0	2	31	1.04
365304--365455	75	2.0	75	100	0	304	27	21	20	30	1.98
366759--366810	21	2.5	21	83	0	68	17	19	34	28	1.94
370408--370465	30	1.9	30	92	0	98	29	10	18	41	1.84
377841--377926	24	3.6	24	72	12	77	54	19	13	11	1.70
381036--381072	16	2.2	18	90	9	60	29	5	8	56	1.51
381294--381339	21	2.2	21	88	0	65	41	10	4	43	1.59
382578--382630	21	2.5	22	84	6	65	24	1	32	41	1.66
382606--382652	14	3.4	14	77	11	60	29	0	23	46	1.52
382583--382657	35	2.1	35	85	4	98	26	1	28	44	1.63
383997--384021	4	6.2	4	100	0	50	24	0	24	52	1.48
383914--384119	98	2.1	100	87	1	290	22	6	22	47	1.75
386541--386586	23	2.0	23	91	0	74	39	0	2	58	1.10
386550--386602	23	2.3	23	83	6	63	43	1	1	52	1.23
386956--387010	23	2.5	22	84	3	65	10	21	18	49	1.78
386995--387052	26	2.2	27	84	3	73	10	15	15	58	1.62
387407--387432	13	2.0	13	100	0	52	30	0	15	53	1.42
390206--390256	19	2.7	18	80	17	59	52	1	0	45	1.12
390214--390244	15	2.0	16	93	6	55	54	0	0	45	0.99
390615--390714	42	2.4	42	91	0	155	33	30	12	25	1.92
390655--390687	15	2.2	15	94	0	57	33	27	9	30	1.88
392822--393002	90	2.0	92	89	2	276	22	7	23	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395671--395706	18	2.0	18	94	0	63	19	47	22	11	1.80
395693--395718	8	3.2	8	100	0	52	15	34	26	23	1.94
395658--395693	13	2.8	13	86	0	54	19	47	19	13	1.83
397657--397724	24	2.8	24	89	8	111	27	14	19	38	1.91
397673--397711	12	3.2	12	79	13	53	28	12	23	35	1.91
397843--397937	43	2.2	43	96	0	172	15	11	36	35	1.84
399201--399246	23	2.0	23	86	0	65	41	0	2	56	1.11
399233--399277	23	2.0	23	86	8	65	55	2	0	42	1.12
399335--399404	26	2.7	24	77	14	68	47	0	4	48	1.21
399977--400030	25	2.2	25	96	0	99	25	7	9	57	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11