genome.fa.s7967.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007967.1 Hibiscus syriacus cultivar Beakdansim tig00110402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2476418

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  5  of  11  ( 1301 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
742563--742601	19	2.1	19	85	0	51	43	2	0	53	1.14
743088--743153	26	2.6	26	92	2	107	18	21	22	37	1.94
743998--744058	24	2.6	24	89	5	99	45	3	4	45	1.41
745353--745406	21	2.6	21	96	0	99	20	27	14	37	1.92
745460--745685	111	2.0	112	95	2	409	30	19	8	41	1.82
747327--747409	27	3.1	27	98	0	157	43	12	21	22	1.86
747480--747530	26	2.0	26	100	0	102	35	23	1	39	1.66
748671--748787	41	2.9	41	87	2	155	34	17	18	29	1.95
753359--753411	20	2.7	21	72	21	51	58	9	13	18	1.61
758319--758346	2	14.0	2	100	0	56	50	0	0	50	1.00
759777--759809	16	2.1	16	94	0	57	12	6	15	66	1.42
760817--760867	19	2.6	19	87	6	66	72	1	1	23	1.05
760884--760908	13	1.9	13	100	0	50	48	8	4	40	1.51
760909--760949	12	3.6	12	74	12	50	48	0	2	48	1.14
760888--760983	23	4.4	22	78	11	90	47	2	2	47	1.25
761001--761048	21	2.1	23	81	14	55	50	6	0	43	1.27
763977--764035	24	2.5	24	97	0	109	28	15	16	38	1.89
765335--765363	14	2.0	15	93	6	51	62	10	0	27	1.28
765668--765740	20	3.6	20	74	3	83	39	23	21	15	1.91
765665--765765	41	2.5	41	95	0	184	38	23	18	18	1.93
765665--765769	21	5.1	21	69	4	88	39	24	18	18	1.92
767457--767511	19	2.8	19	91	2	83	36	1	1	60	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
767713--767771	28	2.0	29	83	6	75	49	8	10	32	1.67
779495--779527	16	2.1	16	100	0	66	42	6	18	33	1.75
808955--809091	49	2.8	49	81	3	134	39	15	17	27	1.90
812720--812787	20	3.4	20	87	0	100	23	7	17	51	1.70
812723--812828	40	2.7	40	82	5	117	27	10	13	49	1.74
812757--812835	20	3.9	19	83	3	77	29	13	8	48	1.73
812831--812902	32	2.2	32	85	0	90	31	13	13	40	1.85
812838--812902	17	3.9	17	76	8	62	32	13	13	40	1.85
812831--812882	15	3.3	15	76	10	59	30	15	15	38	1.88
812884--812921	20	1.9	20	88	0	58	28	10	13	47	1.76
813579--813708	60	2.2	60	98	0	251	31	10	26	31	1.89
814981--815071	42	2.2	42	93	0	155	34	30	15	19	1.93
816452--816598	35	4.2	35	88	3	179	34	0	21	42	1.58
823350--823466	29	4.1	29	75	8	114	40	19	20	19	1.92
824262--824293	16	2.0	16	100	0	64	18	12	31	37	1.88
830712--830762	7	7.3	7	86	0	66	47	35	1	15	1.57
831498--831558	31	2.0	31	100	0	122	29	24	19	26	1.99
835992--836044	21	2.5	21	72	6	54	20	24	18	35	1.95
836054--836148	20	4.7	20	75	7	84	34	24	17	23	1.96
836334--836387	22	2.5	22	81	0	72	22	40	18	18	1.91
836732--836818	40	2.2	39	81	6	104	44	24	16	14	1.85
836732--836819	20	4.4	20	81	4	90	44	23	17	14	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
836840--836870	14	2.2	14	94	0	53	51	22	19	6	1.69
836880--836974	32	2.8	33	85	6	120	14	23	21	41	1.90
836946--837014	20	3.5	20	91	0	111	14	20	24	40	1.90
838825--838948	14	8.1	14	69	16	68	44	21	20	13	1.86
838825--838959	33	4.2	33	77	10	154	45	21	20	13	1.85
838816--838939	61	2.0	61	100	0	248	43	20	19	16	1.88
838816--838907	28	3.1	28	71	14	94	41	20	19	18	1.91
838965--839022	18	3.2	18	82	4	71	13	17	22	46	1.83
838971--839022	19	2.8	19	85	2	70	11	19	23	46	1.82
840931--841032	14	5.8	19	71	23	98	16	22	18	42	1.89
840937--841045	33	3.3	33	94	1	182	14	23	19	42	1.88
840992--841045	14	3.5	14	73	22	54	12	24	20	42	1.87
841037--841125	20	4.4	20	92	2	144	15	21	25	37	1.93
843395--843419	12	2.1	12	100	0	50	0	28	0	72	0.86
843594--843647	24	2.2	24	93	0	90	40	20	18	20	1.91
843594--843661	24	2.8	24	84	0	64	38	20	17	23	1.93
844382--844490	20	5.4	20	76	7	87	22	18	27	31	1.97
844357--844492	40	3.4	40	72	5	121	22	18	25	34	1.96
844506--844563	21	2.8	21	92	5	91	41	17	25	15	1.89
850898--850945	23	2.1	23	84	0	60	47	14	12	25	1.79
851976--852002	3	9.0	3	100	0	54	33	0	0	66	0.92
853158--853210	20	2.7	20	82	11	74	30	28	13	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
853158--853206	19	2.5	20	83	12	66	28	30	12	28	1.93
853324--853481	56	3.0	53	80	15	202	31	18	12	38	1.87
853480--853519	20	2.0	20	95	0	71	22	20	15	42	1.88
853485--853528	20	2.2	20	83	0	52	31	18	9	40	1.81
853525--853658	49	2.6	51	77	11	148	32	17	11	38	1.86
853344--853670	180	1.8	181	90	2	532	30	17	12	38	1.88
853572--853669	49	2.0	50	78	9	103	31	17	13	37	1.88
857037--857066	15	2.1	15	93	6	53	63	0	0	36	0.95
857546--857603	29	2.0	29	93	0	98	15	44	24	15	1.85
857551--857615	29	2.2	29	83	0	76	15	46	24	13	1.82
857617--857648	15	2.1	15	100	0	64	31	40	15	12	1.85
859705--859753	21	2.3	22	85	3	64	40	0	2	57	1.10
885707--885768	23	2.9	21	85	7	81	20	35	25	17	1.95
890656--890692	18	2.1	18	94	0	65	35	21	10	32	1.88
891443--892135	43	16.1	43	87	1	895	35	22	22	19	1.96
891443--892391	129	7.5	129	83	5	1128	35	22	22	19	1.96
892154--892391	43	5.5	43	88	2	361	35	23	22	18	1.96
892003--892292	157	1.8	157	91	2	476	38	22	21	17	1.93
891519--892335	215	3.9	200	81	8	798	36	22	23	18	1.95
891911--892378	243	1.9	243	87	0	686	36	22	22	18	1.95
899903--899958	21	2.8	19	76	10	67	32	16	16	35	1.90
904520--904601	23	3.6	23	86	0	110	45	18	24	12	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
904832--904946	38	2.9	39	79	12	130	51	5	6	37	1.49
907226--907251	9	2.9	9	100	0	52	42	11	46	0	1.40
915259--915298	20	2.0	20	90	0	62	20	15	35	30	1.93
917168--917234	3	22.0	3	96	3	125	32	0	0	67	0.91
925503--925533	12	2.6	12	94	0	53	19	6	3	70	1.22
926476--926517	21	2.0	21	85	4	57	38	19	9	33	1.84
934776--934844	21	3.2	21	69	18	70	34	11	18	34	1.87
935874--935951	30	2.5	31	87	4	113	17	17	32	32	1.94
935929--936067	46	3.0	46	75	4	136	21	13	22	42	1.88
938045--938091	20	2.3	21	79	17	55	55	2	4	38	1.31
938730--938772	20	2.2	20	86	0	59	27	18	13	39	1.89
945153--945792	55	11.7	55	75	11	410	26	23	16	33	1.96
945153--945792	164	3.9	164	84	6	730	26	23	16	33	1.96
945187--945629	219	2.0	219	82	6	540	27	23	16	32	1.96
945187--945738	219	2.5	218	77	8	471	26	23	16	33	1.96
946827--946891	10	6.8	10	74	20	50	13	9	0	76	1.00
946813--946887	35	2.1	35	82	4	89	10	12	0	77	1.00
946822--946888	29	2.4	27	90	5	98	11	8	0	79	0.95
946822--946891	35	2.0	36	88	2	106	12	10	0	77	1.00
960099--960221	40	3.0	41	73	11	108	34	16	22	26	1.95
960192--960276	44	1.9	44	88	9	129	32	12	23	30	1.92
960322--960414	46	2.0	46	89	0	141	19	15	25	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
964998--965077	38	2.2	33	80	16	88	48	0	1	50	1.08
965093--965135	12	3.6	12	81	9	52	13	20	44	20	1.86
966496--966542	4	12.2	4	91	8	80	27	0	23	48	1.51
966496--966542	22	2.2	22	92	7	80	27	0	23	48	1.51
970309--970434	62	2.0	62	100	0	252	35	14	14	35	1.86
1005040--1005094	26	2.3	22	80	17	65	40	3	21	34	1.71
1008977--1009032	27	1.9	28	86	13	78	39	0	1	58	1.08
1008982--1009043	30	2.2	27	82	8	70	43	0	1	54	1.09
1009121--1009178	26	2.2	25	81	6	62	50	0	1	48	1.11
1013321--1013416	44	2.2	44	92	0	156	12	26	14	46	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11