genome.fa.s7967.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007967.1 Hibiscus syriacus cultivar Beakdansim tig00110402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2476418

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  8  of  11  ( 1301 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1595266--1595301	2	18.0	2	100	0	72	50	0	0	50	1.00
1595637--1595665	15	1.9	15	100	0	58	37	6	34	20	1.80
1595984--1596922	200	4.7	199	86	2	1202	31	16	14	37	1.89
1595984--1596922	401	2.3	398	87	2	1326	31	16	14	37	1.89
1596945--1596977	15	2.2	15	100	0	66	24	15	24	36	1.93
1597287--1597335	19	2.6	19	96	0	89	55	10	2	32	1.45
1599098--1599197	33	3.0	33	94	0	173	25	45	0	30	1.54
1601655--1602508	182	4.7	181	89	2	1216	27	16	14	40	1.88
1601655--1602508	362	2.3	361	89	3	1286	27	16	14	40	1.88
1606002--1606077	10	7.3	10	73	8	71	31	13	9	46	1.74
1606000--1606077	21	3.7	21	100	0	156	30	12	8	47	1.73
1606012--1606071	11	5.6	11	76	7	70	26	15	10	48	1.76
1606553--1606612	14	4.2	14	89	6	86	60	0	31	8	1.27
1608915--1609182	20	13.2	20	78	10	224	41	22	19	16	1.89
1608917--1609182	60	4.4	60	79	9	263	41	22	19	16	1.90
1609278--1609364	6	14.5	6	100	0	174	33	50	16	0	1.45
1609865--1609939	6	12.5	6	100	0	150	0	16	50	33	1.45
1610035--1610242	42	5.1	41	82	8	223	15	19	21	43	1.88
1610035--1610242	20	10.2	20	74	11	147	15	19	21	43	1.88
1615010--1615048	17	2.3	17	100	0	78	10	35	0	53	1.35
1619547--1619593	21	2.2	21	100	0	94	31	10	19	38	1.86
1619980--1620031	27	1.9	27	81	14	63	57	21	0	21	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1624602--1624677	35	2.2	35	83	9	93	51	7	15	25	1.70
1631300--1631382	23	3.7	22	82	10	98	28	22	22	25	1.99
1632068--1632122	22	2.6	22	82	5	69	25	23	12	38	1.90
1634870--1634924	18	3.2	18	87	10	71	30	14	27	27	1.95
1637915--1637951	2	18.5	2	100	0	74	51	0	0	48	1.00
1637951--1638004	2	27.0	2	100	0	108	50	0	50	0	1.00
1639334--1639366	17	1.9	17	93	0	57	45	0	9	45	1.35
1639447--1639479	17	1.9	17	88	11	50	33	3	0	63	1.10
1645827--1645864	11	3.5	11	100	0	76	55	0	36	7	1.29
1646094--1646140	21	2.2	21	78	14	53	44	4	17	34	1.68
1650692--1650735	19	2.3	19	96	0	79	34	31	9	25	1.87
1652519--1652584	23	3.0	22	82	12	73	21	21	27	30	1.98
1663267--1663314	24	2.1	23	85	11	64	25	22	6	45	1.75
1663850--1663923	20	3.5	22	77	13	77	27	22	16	33	1.95
1669557--1669717	81	2.0	82	91	1	261	31	14	8	45	1.74
1675347--1675377	7	4.4	7	91	0	53	41	12	25	19	1.87
1675876--1676102	45	5.0	45	89	0	328	30	22	7	39	1.82
1677251--1677371	39	3.2	39	61	21	92	33	16	11	38	1.85
1677258--1677409	76	2.0	76	97	2	288	31	14	13	40	1.84
1682497--1682535	3	13.3	3	94	5	71	64	0	0	35	0.94
1689104--1689144	16	2.5	17	73	11	50	58	7	0	34	1.26
1690841--1690904	28	2.2	28	83	5	74	42	4	17	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1691613--1691657	23	2.0	23	86	0	63	26	26	26	20	1.99
1692290--1692327	20	1.9	20	88	0	58	10	31	34	23	1.89
1692856--1692897	19	2.2	19	79	12	50	59	0	35	4	1.19
1694744--1694771	5	5.6	5	100	0	56	21	0	0	78	0.75
1695637--1695702	29	2.3	29	83	0	87	31	24	4	39	1.75
1696252--1696318	31	2.2	31	88	0	98	52	5	14	26	1.65
1699024--1699077	21	2.5	22	87	3	74	25	16	18	38	1.92
1699196--1699223	14	2.0	14	100	0	56	50	21	14	14	1.78
1705524--1705561	19	2.0	20	89	5	60	44	0	2	52	1.14
1705766--1705879	39	2.9	39	83	12	153	47	0	17	35	1.48
1705902--1705926	2	12.5	2	100	0	50	52	0	0	48	1.00
1708651--1708680	15	2.0	15	100	0	60	40	0	0	60	0.97
1708744--1708774	16	1.9	16	93	0	53	51	22	3	22	1.62
1708975--1709018	3	14.7	3	100	0	88	31	0	0	68	0.90
1709204--1709259	29	1.9	29	89	7	87	32	10	21	35	1.88
1709538--1709598	31	1.9	32	83	9	81	45	3	0	50	1.17
1714340--1714391	23	2.3	23	87	6	72	38	5	0	55	1.24
1715603--1715646	17	2.6	17	96	0	79	34	27	13	25	1.93
1715897--1715987	2	45.5	2	100	0	182	50	0	0	49	1.00
1718065--1718100	16	2.2	16	95	0	63	36	0	11	52	1.37
1718254--1718283	14	2.1	14	93	0	51	36	6	0	56	1.26
1721562--1721642	3	27.3	3	97	2	155	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1721877--1721991	60	1.9	60	80	3	133	34	18	11	35	1.86
1725410--1725664	51	4.8	51	80	9	289	28	25	15	29	1.96
1725410--1725658	106	2.3	106	84	4	358	28	25	16	29	1.96
1725675--1725784	37	3.0	37	84	0	148	24	19	16	40	1.91
1727067--1727215	8	18.6	8	75	19	86	11	14	0	73	1.09
1727059--1727194	11	12.1	11	68	18	52	11	14	0	74	1.08
1727149--1727210	10	6.4	10	76	14	51	11	14	0	74	1.08
1727157--1727215	21	2.6	23	79	17	70	11	13	0	74	1.07
1738695--1738748	27	2.0	27	92	0	90	51	18	7	22	1.70
1743768--1743816	13	3.4	14	83	11	64	28	2	0	69	1.00
1743752--1743817	29	2.2	30	84	7	82	28	1	1	68	1.08
1781064--1781114	22	2.3	22	89	0	75	35	5	7	50	1.55
1782056--1782384	164	2.0	165	99	0	651	37	9	15	37	1.80
1782890--1782966	30	2.6	29	85	4	100	38	5	16	38	1.71
1782890--1782966	29	2.6	30	85	4	95	38	5	16	38	1.71
1784040--1784156	36	3.2	35	74	12	110	29	14	8	47	1.74
1784027--1784155	37	3.5	37	79	4	136	30	15	10	43	1.81
1784206--1784276	36	2.0	36	88	0	106	30	21	9	38	1.86
1784078--1784520	138	3.2	138	88	2	637	31	17	11	39	1.86
1784339--1784424	36	2.4	36	88	3	120	29	19	12	38	1.89
1784575--1784701	65	2.0	65	92	6	215	27	20	12	39	1.89
1784574--1784663	34	3.0	28	70	19	81	28	20	12	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1784727--1784832	40	2.5	42	79	10	119	26	31	17	24	1.97
1784704--1785177	138	3.4	138	85	2	608	26	29	17	26	1.97
1788485--1788578	37	2.5	37	84	3	118	22	4	30	42	1.72
1788506--1788589	37	2.3	37	87	4	118	20	3	33	42	1.69
1788559--1788740	27	7.4	27	72	19	157	24	4	25	45	1.73
1788603--1788740	46	3.0	46	93	0	222	23	5	26	45	1.73
1788642--1788716	19	3.5	19	68	25	60	22	2	26	48	1.64
1788561--1788740	73	2.5	74	74	12	201	24	5	25	45	1.73
1790854--1790897	22	2.0	21	91	4	70	45	9	2	43	1.48
1791047--1791076	12	2.5	12	100	0	60	20	0	13	66	1.24
1796209--1796293	34	2.5	34	92	1	143	18	25	35	20	1.95
1796259--1796319	21	3.0	21	88	7	90	14	29	36	19	1.92
1796602--1797515	455	2.0	455	97	0	1738	35	17	15	30	1.92
1800040--1800126	24	3.8	23	70	18	65	31	14	24	29	1.95
1801596--1801634	17	2.2	18	90	4	62	20	15	10	53	1.70
1801851--1801914	31	2.1	31	100	0	128	37	10	15	35	1.83
1805895--1807512	809	2.0	809	100	0	3236	35	24	20	19	1.96
1811120--1811151	16	2.0	16	100	0	64	50	18	6	25	1.70
1811857--1812019	84	2.0	83	96	1	299	37	16	16	29	1.91
1815276--1815308	15	2.1	16	88	5	50	33	12	9	45	1.73
1816784--1816836	12	4.9	11	78	21	51	26	0	1	71	0.96
1816797--1816835	3	13.7	3	84	10	55	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1816797--1816835	8	4.6	9	84	9	55	28	0	0	71	0.86
1817272--1817357	34	2.5	37	80	17	96	19	5	1	73	1.10
1820498--1820585	26	3.4	26	98	0	167	43	17	15	23	1.87
1820978--1821614	110	5.9	110	88	2	878	35	21	17	25	1.95
1821732--1822504	84	9.3	84	77	7	621	30	24	19	25	1.98
1821732--1822504	249	3.1	248	87	3	1038	30	24	19	25	1.98
1821738--1822488	333	2.3	329	79	5	787	31	24	18	25	1.98
1822856--1822909	23	2.3	23	81	18	67	27	0	0	72	0.85
1823343--1823407	34	1.9	33	84	9	87	20	6	1	72	1.14
1823278--1823400	65	1.9	66	80	11	146	21	8	0	69	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11