genome.fa.s7967.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007967.1 Hibiscus syriacus cultivar Beakdansim tig00110402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2476418

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1301 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2311905--2311945	17	2.4	18	84	11	52	26	2	0	70	0.99
2314267--2314307	7	5.9	7	83	11	57	14	17	9	58	1.62
2318501--2318834	114	2.9	114	91	0	533	34	14	19	31	1.92
2321244--2321297	21	2.5	22	87	6	92	35	11	12	40	1.79
2321814--2322138	165	2.0	167	90	2	521	35	13	12	38	1.82
2322141--2322628	76	6.4	76	96	0	886	23	19	21	34	1.96
2322773--2322797	2	12.5	2	100	0	50	48	0	0	52	1.00
2324008--2324037	15	2.0	15	93	0	51	36	3	6	53	1.44
2334260--2334391	43	3.1	43	98	0	255	30	25	9	35	1.87
2335219--2335353	54	2.5	55	82	1	182	28	28	12	30	1.93
2337579--2337608	13	2.3	13	100	0	60	46	6	6	40	1.56
2341032--2341088	27	2.2	26	78	12	62	47	3	8	40	1.52
2348362--2348396	14	2.5	14	95	0	52	34	14	11	40	1.82
2348452--2348524	34	2.2	36	88	11	111	45	1	0	53	1.09
2348636--2348686	23	2.2	23	82	0	57	45	1	1	50	1.24
2348674--2348754	19	4.3	19	72	20	64	48	1	1	49	1.17
2348801--2348851	23	2.2	23	89	0	75	43	1	3	50	1.31
2348841--2348882	22	1.9	22	90	0	66	52	0	0	47	1.00
2348873--2348905	10	3.2	10	91	8	57	48	0	0	51	1.00
2348812--2348893	32	2.6	32	83	9	98	47	0	1	51	1.08
2349719--2349819	42	2.6	38	79	14	116	51	0	0	47	1.07
2349735--2349815	42	1.9	42	87	0	117	51	0	1	46	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2349797--2349836	17	2.4	17	82	0	53	57	2	0	40	1.12
2349878--2349954	27	2.8	26	72	16	75	48	0	1	50	1.09
2349931--2350002	32	2.3	32	79	13	78	54	0	1	44	1.08
2349974--2350041	31	2.2	32	81	7	77	55	4	0	39	1.20
2350676--2350743	3	22.0	3	79	8	66	39	1	1	57	1.17
2352931--2352988	23	2.4	25	88	8	84	27	1	0	70	0.97
2358298--2358370	7	9.3	7	75	19	56	75	0	20	4	0.97
2358301--2358372	24	2.9	24	75	19	67	72	0	22	5	1.05
2358307--2358372	17	4.0	16	81	13	80	72	0	21	6	1.05
2358307--2358372	33	2.0	33	85	5	89	72	0	21	6	1.05
2362730--2362784	22	2.5	22	84	0	83	34	10	10	43	1.75
2363297--2363623	165	2.0	165	90	1	521	36	13	13	36	1.84
2363658--2364086	73	5.9	73	95	0	752	30	17	13	38	1.88
2364256--2364440	76	2.4	76	90	0	280	25	21	19	34	1.96
2364562--2364624	3	20.0	3	80	6	63	39	1	1	57	1.18
2367997--2368034	20	1.9	20	89	10	60	68	7	0	23	1.16
2368183--2368289	29	3.7	29	71	12	92	58	10	14	16	1.62
2368165--2368307	59	2.4	59	80	6	164	62	10	11	16	1.54
2368207--2368289	29	2.8	29	83	5	96	61	9	13	15	1.56
2369711--2369746	10	3.5	10	85	7	54	8	22	41	27	1.82
2369694--2369746	21	2.5	21	87	9	72	11	20	37	30	1.88
2371755--2371803	2	24.5	2	100	0	98	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2374532--2374665	59	2.3	59	80	7	155	60	11	12	15	1.59
2374550--2374656	29	3.7	29	79	3	117	58	11	14	15	1.62
2376255--2376319	21	3.0	22	75	22	66	73	0	0	26	0.83
2376256--2376317	28	2.3	26	84	15	90	74	0	0	25	0.82
2376255--2376309	16	3.7	16	74	18	64	70	0	0	29	0.87
2376596--2376638	9	4.8	9	88	0	50	39	0	60	0	0.97
2376596--2376637	12	3.5	12	86	0	57	38	0	61	0	0.96
2377260--2377355	48	2.0	49	97	2	185	32	20	10	36	1.87
2377538--2377744	105	2.0	105	92	0	342	29	10	15	44	1.79
2380140--2380175	16	2.2	17	90	5	56	44	2	2	50	1.31
2380696--2380731	16	2.2	17	90	5	56	50	2	2	44	1.31
2382310--2382354	20	2.3	20	81	11	58	46	4	4	44	1.43
2382355--2382392	14	2.8	13	84	7	58	52	0	5	42	1.24
2383686--2383737	22	2.3	23	90	6	81	17	0	32	50	1.47
2383698--2383748	22	2.3	22	83	10	59	21	0	27	50	1.48
2383886--2383920	18	1.9	18	88	0	52	31	34	17	17	1.93
2386656--2386693	19	2.0	20	94	5	69	36	15	10	36	1.82
2386686--2386942	2	132.5	2	73	19	199	42	5	1	50	1.33
2386687--2386942	21	11.7	22	74	19	168	42	5	1	50	1.33
2386686--2386942	27	9.9	26	78	15	232	42	5	1	50	1.33
2388255--2389770	5	305.8	5	97	2	2893	59	20	0	19	1.37
2398589--2398628	19	2.1	19	86	9	55	37	2	7	52	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2401256--2401952	346	2.0	347	99	0	1371	38	13	20	28	1.90
2401792--2402119	161	2.0	164	97	2	617	36	11	18	32	1.87
2406354--2406393	19	2.1	19	86	9	55	37	2	7	52	1.43
2406554--2406607	20	2.7	20	97	0	99	27	27	14	29	1.95
2406701--2406759	21	2.8	21	97	0	109	27	25	20	27	1.99
2408702--2408743	22	1.9	22	90	0	66	30	14	11	42	1.81
2413743--2413802	30	1.9	31	87	12	88	51	1	6	40	1.38
2415682--2415730	12	4.4	11	80	10	55	30	0	2	67	1.02
2415712--2415780	24	2.8	25	78	12	79	43	0	1	55	1.08
2415691--2415851	62	2.6	65	88	10	255	41	0	1	56	1.10
2415743--2415838	38	2.5	37	76	15	99	43	0	2	54	1.12
2415770--2415859	24	3.4	25	76	13	83	44	0	1	54	1.07
2415711--2415927	62	3.4	60	81	14	197	41	0	1	56	1.10
2416137--2416186	23	2.3	22	80	16	59	62	2	2	34	1.18
2416358--2416418	31	2.0	31	86	0	86	47	6	4	40	1.51
2418606--2418651	20	2.3	20	81	7	58	39	13	13	34	1.83
2418688--2418729	21	2.0	22	86	9	61	35	14	14	35	1.86
2422520--2422632	54	2.1	54	91	1	181	44	16	7	31	1.75
2428035--2428137	28	3.7	28	96	0	179	22	5	33	37	1.78
2429561--2429600	20	2.0	21	85	5	55	62	15	7	15	1.53
2429565--2429658	47	2.0	46	85	2	125	64	15	5	13	1.45
2429586--2429659	37	2.1	35	87	9	107	66	17	4	12	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2429927--2429960	10	3.4	10	91	0	59	55	11	11	20	1.67
2435012--2435514	2	255.0	2	67	19	213	45	3	3	48	1.34
2435014--2435246	47	4.9	46	73	19	160	47	3	2	46	1.33
2435234--2435292	31	1.9	31	96	0	109	50	3	5	40	1.41
2445748--2446109	181	2.0	181	100	0	724	38	14	19	26	1.91
2446947--2446985	20	2.0	20	84	0	51	23	7	23	46	1.78
2447167--2447204	20	1.9	20	88	0	58	15	26	36	21	1.93
2447144--2447204	21	3.0	20	78	7	61	14	24	37	22	1.92
2464139--2464393	95	2.7	95	90	4	397	30	16	20	32	1.94
2465532--2467923	85	28.1	85	83	2	2674	35	20	18	26	1.95
2465532--2467923	341	7.0	340	83	3	2655	35	20	18	26	1.95
2468738--2468767	13	2.2	13	94	5	51	36	6	0	56	1.26
2473491--2473521	16	1.9	16	93	0	53	67	0	16	16	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!