genome.fa.s7967.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007967.1 Hibiscus syriacus cultivar Beakdansim tig00110402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2476418

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  4  of  11  ( 1301 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509840--509937	41	2.4	39	96	0	124	17	19	25	37	1.93
509865--509954	20	4.4	20	80	2	108	14	22	22	41	1.89
509939--509998	30	2.0	30	93	0	102	25	20	16	38	1.93
509969--510089	41	3.0	40	83	9	131	19	20	22	37	1.95
510000--510068	20	3.5	19	70	16	59	18	21	20	39	1.93
510171--510204	12	3.1	11	91	8	52	29	52	17	0	1.45
510704--510736	6	5.7	6	92	7	59	0	18	48	33	1.48
510830--511046	41	5.2	41	70	16	169	37	24	18	19	1.94
510867--510923	21	2.7	21	91	0	96	33	31	12	22	1.91
510912--510983	20	3.5	20	82	5	81	40	23	20	15	1.91
510975--511046	22	3.4	22	75	11	87	37	23	19	19	1.94
510969--511025	19	2.8	20	76	7	62	40	19	21	19	1.92
510830--511068	84	2.9	82	76	15	272	36	24	17	20	1.95
517533--517650	4	30.0	4	83	6	143	46	25	4	23	1.70
518230--518297	31	2.2	31	81	5	84	38	4	7	50	1.51
520430--520485	22	2.5	22	94	0	94	12	28	30	28	1.93
522290--522319	15	2.1	15	93	6	53	16	26	20	36	1.93
529151--529272	65	1.9	65	93	3	210	29	14	17	38	1.89
532352--532395	23	1.9	23	90	0	70	50	9	13	27	1.72
537777--537868	47	2.0	47	80	4	105	41	25	14	19	1.89
538316--538461	60	2.4	59	81	7	161	30	24	4	39	1.76
538760--538826	4	16.8	4	93	0	116	50	20	0	28	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538830--538854	12	2.1	12	100	0	50	68	0	0	32	0.90
539553--539802	104	2.4	102	85	3	311	30	10	28	30	1.90
539553--539981	35	12.4	35	75	10	276	31	10	27	30	1.91
541053--541165	60	1.9	56	89	7	172	38	14	17	29	1.89
541112--541215	36	2.9	36	90	7	167	42	13	17	26	1.86
541477--541502	7	3.7	7	100	0	52	61	11	0	26	1.30
544802--545253	224	2.0	226	96	3	851	33	9	13	44	1.75
546658--546951	33	8.7	34	73	11	141	29	12	27	30	1.93
546658--546808	68	2.2	68	84	4	187	29	10	28	31	1.90
546658--546951	31	8.8	31	70	18	173	29	12	27	30	1.93
554736--554768	10	3.4	10	87	8	50	51	0	0	48	1.00
567720--567825	52	2.0	52	98	0	203	28	31	17	22	1.97
572633--572694	22	2.8	21	76	9	61	32	8	19	40	1.81
572638--572799	81	2.0	81	96	0	297	37	9	20	33	1.84
575425--575466	11	3.6	11	77	22	50	23	28	21	26	1.99
579729--579776	23	2.1	23	88	0	69	35	12	18	33	1.89
580203--580265	23	2.7	23	92	0	99	38	20	4	36	1.74
579843--580884	425	2.5	429	96	2	1946	38	12	7	41	1.72
580628--580685	23	2.5	23	94	0	98	37	20	5	36	1.75
580835--580878	22	2.0	23	86	4	63	43	0	4	52	1.22
581104--581189	39	2.2	39	93	0	145	18	13	18	48	1.80
581448--581484	18	2.1	18	89	0	56	51	10	5	32	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581918--581980	23	2.7	23	92	0	99	38	20	4	36	1.74
582322--582387	25	2.6	25	80	0	87	42	13	9	34	1.76
584851--585340	182	2.7	182	94	1	851	33	17	14	34	1.91
586834--586908	3	25.0	3	73	0	60	22	34	6	36	1.81
586838--586920	12	6.9	12	83	0	94	20	34	8	36	1.83
586842--586920	36	2.2	36	90	0	122	20	35	8	35	1.84
586862--586923	18	3.4	18	79	0	79	17	35	9	37	1.83
586838--586923	6	14.3	6	77	0	64	19	34	8	37	1.82
588472--588774	148	2.0	148	96	1	554	30	16	15	37	1.90
588620--589498	199	4.4	199	95	2	1556	31	16	15	37	1.90
589617--589664	19	2.6	19	93	3	80	56	10	2	31	1.45
591549--591613	21	3.1	21	79	0	76	16	30	13	38	1.88
593939--593984	20	2.3	20	86	13	69	17	15	10	56	1.67
593821--594196	180	2.1	180	85	3	501	27	16	14	41	1.87
594260--594723	225	2.1	216	90	5	688	39	7	7	44	1.62
598249--598283	2	17.5	2	100	0	70	48	0	0	51	1.00
606193--606241	22	2.4	20	81	15	64	20	20	6	53	1.67
606201--606244	22	2.0	22	100	0	88	22	18	9	50	1.75
608478--608526	24	2.0	24	84	0	62	38	10	2	48	1.48
609380--609441	22	2.9	21	79	13	65	45	0	3	51	1.17
611902--611969	33	2.1	33	97	0	127	30	19	5	44	1.74
614717--614832	60	2.0	60	87	1	171	33	9	17	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617021--617056	16	2.3	15	90	4	54	41	0	5	52	1.24
618712--618739	5	5.6	5	100	0	56	39	0	0	60	0.97
621648--621691	23	1.9	23	100	0	88	22	13	27	36	1.92
636437--636561	60	2.1	60	80	3	135	39	12	13	34	1.83
636855--636953	32	3.0	31	85	8	117	48	6	1	44	1.34
638649--638696	23	2.1	23	84	7	62	47	0	0	52	1.00
638794--639084	152	1.9	152	90	1	467	31	15	10	41	1.82
642903--642979	40	1.9	39	82	12	95	48	2	0	49	1.15
644920--644948	2	14.5	2	100	0	58	51	0	0	48	1.00
647658--647740	2	41.5	2	100	0	166	49	0	0	50	1.00
649090--649116	2	13.5	2	100	0	54	51	0	0	48	1.00
661454--661538	15	5.7	15	85	0	107	28	3	21	47	1.67
661673--661717	23	2.0	23	86	0	63	22	24	20	33	1.97
669254--669586	166	2.0	166	100	0	666	24	22	27	25	2.00
673165--673192	13	2.2	13	100	0	56	7	25	25	42	1.80
675608--675833	120	1.9	121	92	0	382	32	24	16	25	1.96
676106--676252	60	2.4	59	78	6	179	38	14	10	37	1.80
677075--677143	30	2.3	30	87	0	111	39	4	14	42	1.66
679695--679742	12	4.1	12	74	15	55	43	0	4	52	1.20
679769--679804	18	2.0	18	94	0	63	33	2	5	58	1.36
679978--680028	15	3.3	15	76	13	50	27	7	7	56	1.55
680444--680486	22	2.0	22	95	0	77	18	16	16	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681133--681197	3	21.3	3	96	3	121	0	32	0	67	0.91
682155--682255	3	33.7	3	100	0	202	33	0	66	0	0.92
682274--682338	30	2.2	30	82	0	76	38	10	16	33	1.84
684136--684241	40	2.7	40	75	11	135	19	15	16	49	1.80
686479--686522	19	2.3	19	81	11	54	25	4	0	70	1.06
686486--686535	23	2.2	23	85	7	66	26	4	0	70	1.05
688819--688869	27	1.9	26	84	11	68	41	7	15	35	1.76
688820--688876	26	2.2	26	81	12	64	45	7	17	29	1.75
688820--688876	27	2.2	26	81	9	62	45	7	17	29	1.75
689648--689718	35	2.0	35	91	0	115	49	11	11	28	1.73
695387--695419	3	11.0	3	93	0	57	36	0	0	63	0.95
703189--703303	60	1.9	60	83	0	149	40	12	9	38	1.75
707346--707410	28	2.3	29	72	15	66	55	10	0	33	1.35
713121--713419	60	5.0	60	89	0	402	38	19	18	23	1.93
713126--713423	119	2.5	119	86	1	409	38	19	18	23	1.93
714659--714691	17	2.0	17	88	5	50	30	18	6	45	1.73
715288--715361	25	3.0	25	84	2	87	31	22	21	24	1.99
715493--715552	15	4.0	15	86	0	66	38	20	5	36	1.74
720480--720515	11	3.2	11	88	7	54	2	0	16	80	0.83
720480--720516	6	6.3	6	87	6	58	2	0	16	81	0.81
723947--723991	17	2.6	18	77	16	51	53	0	0	46	1.00
732126--732170	23	2.0	23	81	0	54	11	24	8	55	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
736209--736246	2	19.5	2	94	5	69	52	0	0	47	1.00
736530--736571	21	2.0	21	100	0	84	28	14	28	28	1.95
737125--737149	6	4.2	6	100	0	50	32	0	32	36	1.58
737230--737495	19	13.3	19	71	14	187	39	21	19	19	1.92
737245--737474	61	3.8	61	71	14	215	39	22	20	18	1.93
737302--737580	41	6.9	41	83	8	331	38	22	20	18	1.93
737325--737398	21	3.6	21	77	3	96	33	27	18	20	1.96
737264--737577	162	1.9	163	88	5	474	38	22	20	18	1.93
737971--738082	39	2.9	39	74	1	109	34	25	23	16	1.95
742473--742538	24	2.6	25	75	15	64	50	4	0	45	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11