genome.fa.s7967.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007967.1 Hibiscus syriacus cultivar Beakdansim tig00110402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2476418

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1301 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401387--401438	21	2.7	18	72	16	59	50	0	0	50	1.00
401519--401653	72	1.9	73	90	1	218	34	18	23	22	1.96
401901--401973	15	5.1	15	68	9	62	31	30	10	27	1.91
401882--402000	42	2.7	42	89	5	166	32	31	12	23	1.92
403410--403590	90	2.0	92	89	2	276	22	7	23	46	1.77
405711--405933	122	1.8	122	96	0	410	43	10	12	34	1.77
406023--406120	8	13.0	8	71	15	59	45	2	1	51	1.19
406021--406132	22	4.8	22	76	14	100	44	1	0	52	1.17
406065--406125	20	3.3	19	80	10	56	47	1	0	50	1.10
406363--406415	20	2.7	20	75	0	61	13	13	1	71	1.22
406363--406422	9	6.3	9	76	16	59	11	13	1	73	1.18
406441--406494	23	2.4	22	84	3	63	11	20	18	50	1.77
406480--406540	28	2.2	28	87	0	86	9	16	14	59	1.61
406896--406921	13	2.0	13	100	0	52	30	0	15	53	1.42
409481--409571	47	1.9	48	95	2	166	34	18	17	29	1.94
409705--409757	21	2.7	18	71	18	52	49	0	0	50	1.00
409839--409882	21	2.1	21	100	0	88	34	22	29	13	1.93
410236--410266	15	2.1	15	93	0	53	32	32	6	29	1.83
410236--410335	42	2.4	42	93	0	173	33	32	11	24	1.90
414235--414328	47	2.0	48	95	2	172	32	18	18	30	1.94
414458--414510	21	2.7	18	71	18	52	49	0	0	50	1.00
414591--414634	21	2.1	21	100	0	88	34	22	29	13	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414986--415058	15	5.1	15	68	9	62	31	30	10	27	1.91
414986--415085	42	2.4	42	93	0	164	32	31	12	25	1.92
416162--416230	35	2.0	35	100	0	138	27	5	23	43	1.76
423634--423661	8	3.5	8	100	0	56	39	28	21	10	1.87
426613--426955	157	2.2	157	88	1	499	29	17	6	47	1.71
427223--427260	13	2.9	13	81	14	51	42	0	5	52	1.24
427206--427260	11	5.0	11	75	16	51	41	1	3	52	1.29
428663--428712	21	2.4	22	80	12	61	18	10	4	68	1.34
432736--432921	95	2.0	94	88	3	275	33	17	18	30	1.94
434230--434331	33	2.9	36	81	12	113	28	17	11	42	1.85
434230--434343	36	3.2	36	80	10	137	30	18	11	39	1.86
434531--434653	36	3.4	36	90	1	194	29	20	9	40	1.84
434436--434617	101	1.8	100	90	1	292	31	19	8	41	1.81
434400--434816	137	3.1	137	90	1	653	30	18	8	42	1.80
434230--434653	172	2.5	173	91	2	694	29	18	9	41	1.83
434812--434914	37	3.1	32	77	14	93	42	20	9	27	1.83
435465--435512	2	25.0	2	83	8	64	43	0	2	54	1.12
435465--435532	17	4.1	16	81	10	75	42	0	2	54	1.15
435466--435512	13	3.7	13	88	2	69	42	0	2	55	1.12
435465--435523	17	3.3	18	86	9	77	44	0	3	52	1.17
436886--436915	13	2.2	14	94	5	53	20	3	0	76	0.92
436899--436950	24	2.1	24	82	10	61	17	13	0	69	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436975--437018	16	2.8	16	82	6	54	15	18	0	65	1.27
441180--441227	24	2.0	24	95	0	87	47	4	12	35	1.60
441122--441283	84	1.9	84	83	2	209	45	4	17	31	1.70
443311--443347	20	1.9	19	89	10	58	54	2	0	43	1.14
448422--448468	2	23.5	2	100	0	94	48	0	0	51	1.00
449503--449640	67	2.1	67	86	2	188	36	15	17	30	1.91
451343--451393	25	2.0	25	92	0	84	25	41	11	21	1.87
451499--451601	2	53.5	2	77	7	106	52	0	0	47	1.00
451499--451671	44	4.0	44	85	8	248	50	0	0	49	1.00
451608--451679	36	2.0	36	91	0	117	51	0	0	48	1.00
451775--451849	30	2.5	30	89	2	116	22	30	9	37	1.86
454906--454974	30	2.3	30	87	0	102	37	15	15	30	1.90
455516--455540	13	1.9	13	100	0	50	32	0	0	68	0.90
461347--462916	443	3.6	443	94	1	2638	35	12	14	38	1.83
475043--475090	23	2.1	23	88	0	69	35	12	18	33	1.89
475472--475520	23	2.1	22	88	7	71	42	20	2	34	1.64
475944--476069	39	3.2	39	97	0	234	17	13	20	48	1.81
476329--476365	18	2.1	18	89	0	56	51	10	5	32	1.60
476614--476664	25	2.0	25	92	0	84	39	19	7	33	1.81
476929--476980	23	2.3	22	90	6	77	44	19	1	34	1.62
476939--477001	23	2.7	23	90	0	90	38	19	6	36	1.77
477360--477411	23	2.3	22	90	6	77	44	19	1	34	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477370--477432	23	2.7	23	90	0	90	38	19	6	36	1.77
476696--477531	431	1.9	427	98	0	1600	39	12	8	39	1.73
480556--480598	22	1.9	23	85	4	61	46	11	11	30	1.76
480594--481105	183	2.8	183	94	1	875	33	16	13	36	1.88
482303--482377	3	25.0	3	79	0	78	25	34	5	34	1.79
483851--484624	199	3.9	199	98	0	1489	30	15	16	37	1.90
484743--484791	19	2.6	19	93	0	80	57	10	2	30	1.43
486584--486649	33	2.0	33	90	0	105	22	48	0	28	1.51
486683--486747	21	3.1	21	80	6	69	15	29	15	40	1.88
488976--489018	20	2.3	18	82	17	61	18	16	11	53	1.72
488981--489027	20	2.3	20	89	10	78	17	17	10	55	1.69
489148--489193	20	2.3	20	89	10	76	17	17	10	54	1.70
489259--489706	228	2.0	227	94	1	790	39	7	8	45	1.62
490422--490467	12	3.9	12	82	2	58	13	10	45	30	1.77
490487--490543	24	2.3	25	77	17	66	43	0	0	56	0.99
490574--490610	12	3.0	12	92	4	56	10	16	54	18	1.71
490621--490649	6	4.8	6	100	0	58	0	65	17	17	1.27
490667--490691	6	4.2	6	100	0	50	0	64	16	20	1.30
490625--490736	42	2.7	42	100	0	224	13	42	16	27	1.85
490709--490733	6	4.2	6	100	0	50	0	64	16	20	1.30
491462--491509	21	2.3	21	96	0	87	43	14	4	37	1.65
492086--492246	11	14.7	11	65	26	58	52	6	3	37	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492083--492120	20	1.9	20	94	0	67	57	5	0	36	1.21
492103--492248	50	2.9	48	90	4	184	51	7	4	36	1.49
492156--492423	22	11.2	22	67	23	84	47	6	3	41	1.47
492057--492192	70	1.9	69	91	5	218	50	5	5	38	1.49
492156--492253	11	9.4	11	74	14	75	51	7	4	37	1.49
492330--492515	2	91.5	2	68	18	91	48	4	3	43	1.40
492338--492423	13	6.4	13	77	7	91	48	5	3	41	1.44
492349--492515	13	12.9	13	69	21	88	48	4	2	44	1.37
495378--495534	18	8.9	18	76	10	128	31	7	14	47	1.71
495385--495534	35	4.3	35	88	1	194	31	6	15	46	1.71
495357--495534	70	2.5	70	79	3	214	32	7	14	46	1.71
496711--496768	19	2.9	19	78	14	64	50	5	5	39	1.47
496867--496953	45	2.0	45	95	2	158	56	4	13	25	1.57
497344--497535	105	1.8	105	89	4	305	32	22	9	34	1.86
498694--498778	36	2.3	37	82	8	93	14	4	11	69	1.34
498786--498836	20	2.7	18	82	14	59	13	1	5	78	1.02
498806--498850	16	2.8	16	86	3	54	13	2	4	80	0.97
498954--499070	51	2.3	51	93	0	198	20	4	20	54	1.61
499040--499117	32	2.5	32	89	2	113	29	2	23	44	1.66
499141--499224	13	6.5	13	68	21	52	11	1	7	79	0.97
499165--499250	25	3.7	23	77	14	68	17	2	4	75	1.08
499157--499255	8	12.5	8	69	14	53	16	2	4	77	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499185--499253	4	17.2	4	78	14	63	17	1	4	76	1.02
499133--499241	25	4.4	25	77	13	93	14	1	6	77	1.06
501671--501713	2	21.5	2	95	0	77	48	0	0	51	1.00
502615--502664	19	2.6	19	83	3	55	36	30	12	22	1.90
502748--502774	13	2.1	13	100	0	54	22	7	40	29	1.81
502756--502923	66	2.6	65	86	2	223	23	16	23	36	1.94
502913--502986	22	3.5	22	88	3	107	29	12	25	32	1.92
503054--503088	15	2.3	15	100	0	70	31	14	5	48	1.67
509065--509126	21	3.0	20	90	4	88	38	12	1	46	1.52
509418--509447	16	1.9	15	93	6	51	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11