genome.fa.s8010.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008010.1 Hibiscus syriacus cultivar Beakdansim tig00110472_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3152856

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  1  of  14  ( 1680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91--147	12	4.7	12	75	12	53	3	17	1	77	1.00
78--129	25	2.1	26	78	10	63	3	11	3	80	0.97
90--148	25	2.4	24	80	11	66	3	16	1	77	0.98
5710--5745	15	2.4	15	90	9	56	69	0	2	27	1.02
13254--13314	26	2.3	25	81	13	61	65	1	8	24	1.29
13587--13612	10	2.6	10	100	0	52	11	19	19	50	1.77
13624--13656	16	2.1	16	100	0	66	57	24	12	6	1.57
13723--13797	10	7.7	10	69	21	61	57	21	12	9	1.62
13727--13791	16	4.1	16	95	0	121	56	23	12	7	1.61
14543--14598	14	4.3	14	76	17	66	53	23	12	10	1.69
14523--14597	24	3.1	24	86	3	98	56	20	10	13	1.66
17025--17240	5	43.8	5	89	10	331	60	0	0	39	0.97
19524--19581	10	5.6	10	73	15	55	56	20	12	10	1.64
19527--19575	16	3.1	16	93	0	89	57	22	12	8	1.61
20336--20395	14	4.6	14	80	16	74	60	18	11	10	1.58
20346--20399	24	2.2	24	90	0	81	59	20	12	7	1.58
21534--21665	41	3.2	42	81	2	137	37	25	15	22	1.93
21537--21651	20	5.7	20	79	6	106	33	26	16	23	1.95
21838--21881	22	2.0	22	95	0	79	20	45	15	18	1.85
21905--21973	34	2.0	34	100	0	138	52	24	8	14	1.70
22199--22236	20	1.9	20	94	0	67	10	15	21	52	1.72
22373--22427	25	2.2	24	78	15	58	20	9	18	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23544--23591	18	2.7	18	83	0	69	27	41	12	18	1.86
24133--24199	20	3.4	20	81	2	73	38	23	22	14	1.92
24188--24246	14	3.9	14	72	20	55	50	23	15	10	1.74
24172--24251	33	2.4	33	93	0	142	48	22	17	11	1.78
24258--24354	19	5.6	19	69	22	88	13	19	20	46	1.83
24280--24338	14	3.9	14	72	20	55	11	16	22	49	1.78
24263--24354	33	2.8	33	94	0	166	13	18	20	47	1.81
24748--24815	21	3.3	20	74	8	66	25	39	16	19	1.91
24738--24827	40	2.2	42	86	4	130	22	40	15	22	1.91
26384--26439	19	2.9	19	91	0	94	51	14	21	12	1.74
26478--26565	20	4.4	20	80	5	115	15	21	23	38	1.92
26458--26545	40	2.4	36	83	12	108	15	20	21	42	1.89
26779--26870	20	4.6	20	73	2	76	20	18	21	39	1.93
26855--26906	20	2.5	21	87	3	70	21	23	17	38	1.93
27102--27135	12	2.9	12	86	4	52	17	41	5	35	1.74
27690--27743	24	2.2	24	86	0	72	24	16	18	40	1.90
27918--27942	12	2.1	12	100	0	50	72	0	28	0	0.86
30232--30362	19	7.7	19	66	23	94	43	19	22	13	1.87
30232--30358	33	3.8	33	89	4	202	43	19	22	14	1.87
30233--30365	66	2.0	66	97	0	248	42	19	22	15	1.89
30358--30399	19	2.2	19	83	8	50	16	19	23	40	1.91
30507--30543	14	2.6	14	91	0	65	45	24	0	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31883--31991	42	2.6	41	82	5	112	22	18	33	25	1.97
32223--32407	91	2.0	90	91	6	300	47	17	12	22	1.82
34094--34225	19	7.1	19	77	11	130	43	20	22	12	1.86
34221--34287	19	3.5	19	85	2	89	10	16	25	47	1.78
34824--34877	20	2.7	20	82	2	63	20	22	18	38	1.93
34867--34929	20	3.0	21	79	4	74	39	17	20	22	1.92
34931--34979	20	2.5	20	86	6	64	24	18	26	30	1.98
44142--44190	24	2.0	24	96	0	89	12	26	30	30	1.92
46845--46871	13	2.1	13	100	0	54	22	14	14	48	1.81
50498--50540	20	2.2	20	86	0	59	32	11	20	34	1.89
52723--52805	44	1.9	42	90	2	121	50	7	20	21	1.72
58629--58677	22	2.2	23	96	3	91	26	44	16	12	1.82
58715--58766	26	2.0	26	92	0	86	23	36	17	23	1.95
59226--59287	28	2.1	30	94	5	110	30	0	12	56	1.37
59763--59819	17	3.3	17	69	13	53	40	0	8	50	1.33
59768--59819	15	3.1	15	73	23	50	40	0	9	50	1.35
59780--59817	20	2.0	19	90	10	60	34	0	7	57	1.28
62908--62939	10	3.2	10	90	0	55	25	9	9	56	1.61
62950--63037	21	4.3	21	63	13	58	43	0	12	44	1.42
62941--63574	60	10.2	60	70	19	387	41	1	12	44	1.52
63103--63199	14	6.7	14	72	19	65	40	0	12	47	1.41
63065--63179	48	2.3	49	91	2	178	41	0	10	47	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63151--63199	25	2.0	25	95	0	89	36	0	16	46	1.47
63265--63301	11	3.1	12	88	11	58	48	0	10	40	1.38
63272--63392	46	2.5	46	93	5	197	42	0	11	45	1.40
63329--63431	35	3.2	35	62	25	91	42	0	11	44	1.47
63495--63524	10	3.0	10	95	0	51	46	0	13	40	1.43
63521--63565	21	2.1	22	87	4	65	42	0	4	53	1.21
63534--63590	14	4.2	14	78	15	57	40	0	12	47	1.41
63543--63590	25	1.9	25	91	0	78	41	0	14	43	1.45
63657--63742	21	4.2	20	65	18	52	41	0	12	45	1.42
63650--63746	11	8.1	12	69	20	53	43	0	12	44	1.42
62997--63987	321	3.0	320	80	11	1010	40	2	12	44	1.56
63657--63891	48	4.3	59	78	19	271	41	0	10	48	1.38
63763--63905	24	5.9	24	72	19	118	40	0	11	48	1.39
63790--63907	21	5.1	22	74	19	98	40	0	9	50	1.35
63810--63906	14	6.7	14	71	19	56	39	0	11	49	1.39
66117--66147	15	2.1	14	94	5	53	54	6	0	38	1.26
66122--66168	16	3.0	16	84	9	53	59	10	0	29	1.31
66468--66508	22	1.9	22	90	5	66	53	21	0	24	1.46
66613--66652	13	3.0	13	88	3	62	0	37	0	62	0.95
66662--66736	26	2.9	26	91	0	123	9	36	6	48	1.62
67318--67382	29	2.2	29	86	0	85	15	21	41	21	1.90
70888--71195	46	6.8	46	77	9	269	31	16	25	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70768--71247	178	2.7	178	83	5	546	30	16	26	26	1.97
71901--72217	85	3.7	84	77	9	293	25	17	21	35	1.95
72278--72539	86	3.0	86	83	2	355	24	21	23	30	1.99
74079--74271	51	3.8	51	88	3	246	22	23	18	36	1.95
74079--74271	103	1.9	102	85	3	271	22	23	18	36	1.95
75564--75645	1	82.0	1	77	0	83	0	10	0	89	0.50
75564--75645	10	8.4	10	88	6	107	0	10	0	89	0.50
75561--75645	15	5.7	15	84	6	120	0	11	0	88	0.52
91441--91487	17	2.9	17	75	9	53	31	10	17	40	1.83
92372--92423	21	2.4	22	84	9	63	28	23	21	26	1.99
92600--92631	13	2.5	13	100	0	64	15	53	15	15	1.74
92661--92723	24	2.6	26	78	16	73	55	0	0	44	0.99
92679--92718	19	2.1	19	85	0	53	55	0	0	45	0.99
92721--92774	23	2.3	24	87	3	74	29	44	12	12	1.80
92721--92774	12	4.6	12	83	4	65	29	44	12	12	1.80
92985--93024	19	2.0	20	85	4	55	37	17	10	35	1.83
99360--99399	20	2.0	20	85	4	55	42	0	12	45	1.42
100080--100123	13	3.5	13	78	6	54	72	6	9	11	1.27
106851--106922	29	2.5	29	93	0	117	34	30	4	30	1.77
108120--108183	29	2.2	29	88	0	92	48	7	7	35	1.61
108149--108402	108	2.3	109	87	6	345	43	10	9	36	1.72
108368--108431	29	2.2	29	91	0	101	42	12	10	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111321--111370	24	2.1	24	88	0	73	46	4	2	48	1.32
113773--113829	29	2.0	29	86	6	80	33	26	7	33	1.83
117614--117671	25	2.4	23	82	8	71	39	0	3	56	1.16
125780--125837	29	2.0	29	89	0	89	13	36	27	22	1.92
125902--125954	23	2.3	24	87	9	83	28	24	35	11	1.90
125972--126027	29	1.9	29	88	0	85	23	30	33	12	1.92
126086--126142	29	2.0	29	92	0	96	21	29	33	15	1.94
126344--126415	7	9.7	7	74	16	56	22	2	5	69	1.22
127133--127267	20	6.7	20	78	7	112	33	23	17	25	1.96
127130--127267	61	2.3	61	84	0	186	34	23	17	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14