genome.fa.s8010.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008010.1 Hibiscus syriacus cultivar Beakdansim tig00110472_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3152856

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  13  of  14  ( 1680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2631398--2631462	20	3.4	18	85	12	85	36	26	18	18	1.94
2631409--2631462	20	2.7	20	94	0	90	37	24	18	20	1.94
2631507--2631578	20	3.6	20	92	0	108	19	18	25	37	1.94
2631722--2631771	18	2.8	18	91	8	84	42	8	20	30	1.80
2633488--2633594	20	5.4	20	85	3	119	45	23	16	14	1.84
2633980--2634022	22	2.0	22	100	0	86	18	13	41	25	1.88
2634197--2634310	20	5.7	20	82	0	138	25	20	25	28	1.99
2634199--2634334	60	2.3	61	81	10	163	24	20	24	30	1.98
2634882--2634993	35	3.2	35	88	0	161	41	21	0	35	1.59
2638039--2638116	35	2.2	35	84	4	104	34	0	21	43	1.53
2645042--2645079	8	4.3	9	81	18	53	44	0	0	55	0.99
2647809--2648112	41	7.4	41	71	12	139	30	21	18	28	1.97
2647831--2647986	21	7.5	21	70	8	97	26	22	17	33	1.96
2647976--2648107	20	6.6	20	85	6	126	36	21	20	21	1.95
2647976--2648089	41	2.8	41	84	6	160	37	20	21	21	1.94
2648623--2648693	19	3.7	19	86	1	97	49	23	15	11	1.77
2648712--2648766	14	3.6	14	73	21	56	10	23	25	40	1.87
2648694--2648790	33	2.9	33	93	1	158	11	23	22	42	1.86
2648758--2648815	20	2.9	20	80	10	64	13	24	18	43	1.87
2650957--2651023	21	3.2	21	66	6	55	23	35	19	20	1.95
2650905--2651023	42	2.8	42	81	5	107	22	36	17	23	1.95
2651833--2651857	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2652044--2652090	24	2.0	24	91	0	76	34	17	19	29	1.94
2652048--2652099	24	2.2	24	82	0	59	36	19	17	26	1.94
2652950--2653000	20	2.5	20	74	0	57	37	19	15	27	1.92
2653213--2653300	20	4.4	20	75	5	97	40	23	19	15	1.90
2653332--2653385	14	3.5	14	77	22	63	11	20	20	48	1.80
2653314--2653384	33	2.2	33	84	0	88	19	19	21	39	1.93
2653512--2653549	14	2.7	14	87	0	58	47	15	0	36	1.46
2654121--2654146	13	2.0	13	100	0	52	30	23	7	38	1.83
2655390--2655457	20	3.5	19	78	6	73	38	22	23	16	1.93
2655446--2655536	14	5.9	14	74	20	83	48	23	17	10	1.79
2655430--2655552	33	3.8	33	94	4	214	47	22	17	12	1.81
2655430--2655552	65	1.9	66	93	5	214	47	22	17	12	1.81
2655548--2655643	19	5.6	19	69	25	79	14	18	19	46	1.83
2655553--2655643	32	2.8	32	91	1	146	14	17	19	48	1.81
2655628--2655682	20	2.8	19	83	8	65	18	21	23	36	1.95
2657507--2657570	20	3.2	20	84	0	74	45	21	17	15	1.85
2657813--2657856	22	2.0	22	95	0	79	18	15	45	20	1.85
2658024--2658119	20	4.6	22	73	12	78	22	16	22	37	1.94
2658024--2658121	41	2.4	41	85	0	142	22	16	22	38	1.92
2658958--2658988	14	2.2	14	94	0	53	16	12	12	58	1.64
2658963--2659008	24	1.9	24	95	0	83	17	10	13	58	1.62
2659171--2659208	20	1.9	20	88	0	58	21	10	7	60	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2659208--2659276	24	3.0	23	87	4	93	10	13	18	57	1.63
2659171--2659303	47	2.9	45	73	8	126	13	13	15	57	1.65
2669732--2669756	2	12.5	2	100	0	50	0	48	0	52	1.00
2679598--2679832	36	6.5	37	83	7	218	37	23	20	19	1.94
2679591--2679832	108	2.2	109	83	4	310	36	23	19	19	1.95
2679598--2679789	72	2.7	70	84	4	258	36	25	19	18	1.94
2680194--2681380	104	11.4	104	85	5	1288	32	19	25	22	1.97
2680191--2681330	158	7.3	157	83	6	1297	32	19	25	22	1.97
2680191--2681380	364	3.3	363	89	3	1723	32	19	25	22	1.97
2681623--2681658	3	12.7	3	88	11	58	33	0	0	66	0.92
2687706--2687790	35	2.5	35	81	14	88	41	27	4	27	1.76
2687788--2687839	20	2.6	20	93	0	86	28	19	9	42	1.82
2687807--2687872	32	2.1	32	91	5	107	30	18	7	43	1.77
2687788--2687889	52	2.0	52	86	3	143	29	19	8	42	1.81
2689645--2689962	20	15.6	20	79	7	174	38	19	22	19	1.93
2689790--2689960	40	4.2	40	83	7	218	36	16	25	21	1.94
2689810--2689962	83	1.8	83	88	0	234	35	17	25	20	1.95
2689769--2689960	103	1.9	103	95	0	348	36	17	25	21	1.94
2690054--2690094	5	7.6	5	97	2	55	19	53	26	0	1.45
2690054--2690091	12	3.5	11	92	7	60	18	55	26	0	1.43
2690281--2690346	20	3.3	20	82	0	87	22	28	18	30	1.97
2690281--2690369	40	2.1	42	87	6	128	21	26	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2690383--2690436	20	2.7	20	94	0	90	11	18	18	51	1.74
2690423--2690473	19	2.6	20	87	3	68	15	15	23	45	1.85
2694814--2694851	20	1.9	20	88	0	58	34	23	0	42	1.55
2696646--2696716	30	2.4	30	92	0	115	11	40	21	26	1.87
2697159--2697230	26	3.0	24	71	21	69	27	5	4	62	1.36
2697256--2697340	35	2.5	33	78	14	91	25	8	10	55	1.62
2700878--2700994	51	2.3	50	74	12	112	23	26	34	16	1.95
2704423--2704488	30	2.3	27	82	7	78	42	1	0	56	1.08
2704428--2704480	25	2.0	28	86	13	78	37	1	0	60	1.08
2704428--2704480	26	2.0	26	89	7	81	37	1	0	60	1.08
2707178--2707230	21	2.5	21	87	6	72	66	9	0	24	1.21
2730625--2730676	24	2.2	24	86	6	70	19	21	34	25	1.96
2735694--2735806	59	1.9	59	89	3	174	27	23	15	33	1.95
2738577--2738603	2	13.5	2	100	0	54	48	0	0	51	1.00
2740158--2740213	20	2.8	20	78	10	69	35	19	5	39	1.75
2742273--2742529	127	2.0	126	93	1	435	42	5	11	40	1.64
2752216--2756411	120	35.0	120	92	1	6775	34	19	13	31	1.91
2764232--2764259	2	14.0	2	100	0	56	50	0	0	50	1.00
2769302--2769392	28	3.2	29	75	20	86	50	2	2	45	1.26
2771298--2771343	24	1.9	24	82	8	58	21	13	4	60	1.49
2774699--2774729	2	15.5	2	100	0	62	48	0	0	51	1.00
2776412--2776501	46	1.9	47	93	2	155	27	11	23	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2786153--2786209	18	3.2	18	80	19	57	71	1	19	7	1.17
2786161--2786193	16	1.9	18	88	11	52	72	0	18	9	1.10
2786143--2786247	19	5.7	19	70	15	69	70	0	21	6	1.16
2786238--2786294	20	2.8	20	81	10	62	77	0	14	8	0.99
2786153--2786284	62	2.1	62	80	12	139	72	0	19	6	1.11
2787603--2788333	51	13.9	51	89	5	847	29	15	25	28	1.96
2790106--2790182	2	38.5	2	100	0	154	49	0	0	50	1.00
2793298--2793332	18	2.0	18	88	5	54	68	0	0	31	0.90
2795783--2795837	26	2.1	27	83	10	69	49	1	1	47	1.23
2802704--2802728	7	3.6	7	100	0	50	0	52	0	48	1.00
2818236--2818266	16	1.9	16	93	0	53	35	22	22	19	1.96
2820417--2820467	22	2.3	22	83	12	61	37	1	7	52	1.42
2828525--2830229	84	20.6	82	77	7	1524	29	25	20	24	1.99
2828529--2830254	249	6.9	249	86	4	1981	29	25	20	24	1.99
2828537--2830229	165	10.2	166	81	6	1564	29	25	20	24	1.99
2861837--2861959	44	2.8	43	80	9	124	25	20	27	26	1.99
2867775--2867866	45	2.0	46	91	2	150	27	15	25	32	1.95
2869375--2869444	34	2.1	33	89	2	104	30	28	4	37	1.76
2876543--2876610	35	1.9	35	88	5	102	45	20	0	33	1.52
2876616--2876682	35	1.9	35	90	0	107	35	1	20	41	1.62
2881621--2881663	17	2.4	18	84	7	52	58	0	0	41	0.98
2883918--2883993	21	3.6	21	90	0	116	22	22	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2883899--2884005	42	2.6	42	83	1	126	23	22	20	33	1.97
2884049--2884179	21	6.3	21	71	14	92	24	20	21	33	1.97
2884074--2884170	42	2.3	42	96	0	185	20	19	23	36	1.95
2884904--2884975	21	3.4	21	70	14	67	40	22	16	20	1.91
2884900--2884994	42	2.3	42	96	0	172	37	24	16	21	1.93
2884925--2885015	21	4.3	21	75	10	96	34	26	17	21	1.96
2889719--2889760	22	2.0	21	85	4	57	47	0	0	52	1.00
2894853--2894886	17	1.9	18	88	5	52	52	0	26	20	1.46
2896224--2896274	16	3.3	15	76	13	50	58	5	3	31	1.40
2896774--2896806	17	2.0	17	88	5	50	36	3	3	57	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14