genome.fa.s8010.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008010.1 Hibiscus syriacus cultivar Beakdansim tig00110472_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3152856

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2898048--2898102	26	2.1	26	100	0	110	18	18	12	50	1.77
2898507--2898547	18	2.3	18	91	4	66	29	4	2	63	1.28
2900706--2900754	26	1.9	26	84	12	66	28	0	22	48	1.50
2921514--2921578	28	2.3	28	89	5	96	33	4	0	61	1.16
2923863--2923894	2	16.0	2	100	0	64	50	0	0	50	1.00
2928894--2928950	20	2.8	20	89	0	96	24	28	12	35	1.91
2930245--2930352	54	2.0	54	83	0	135	36	5	16	41	1.72
2934144--2934180	2	18.5	2	100	0	74	51	0	0	48	1.00
2949849--2949888	21	1.9	21	89	0	62	25	40	25	10	1.86
2951843--2951876	17	2.0	17	94	0	59	17	0	26	55	1.42
2955909--2956049	29	4.9	29	94	1	230	17	38	26	17	1.92
2956286--2956354	26	2.5	27	90	6	104	18	24	37	18	1.94
2956289--2956332	13	3.4	13	75	12	54	18	22	38	20	1.93
2956282--2956416	29	4.6	29	76	11	150	19	26	37	17	1.93
2956282--2956369	26	3.3	26	82	14	94	19	26	37	17	1.93
2956926--2956969	21	2.1	21	91	0	70	29	0	15	54	1.42
2957469--2957528	17	3.3	17	72	17	57	38	0	11	50	1.39
2960528--2960569	13	3.3	13	83	6	59	16	21	42	19	1.89
2960506--2960536	7	4.4	7	91	0	53	29	29	29	12	1.94
2960528--2960569	12	3.3	12	86	6	57	16	21	42	19	1.89
2960548--2960601	18	3.0	18	91	0	90	16	16	46	20	1.84
2967690--2967744	29	1.9	28	81	3	65	38	23	9	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2967781--2967822	13	3.3	13	86	6	68	16	21	45	16	1.86
2967801--2967836	18	2.0	18	100	0	72	16	16	50	16	1.79
2967785--2967821	12	2.9	13	88	8	58	18	18	45	16	1.85
2967839--2967884	10	4.6	10	84	10	67	34	28	21	15	1.94
2967839--2967885	11	4.6	11	82	17	66	34	27	21	17	1.95
2967847--2967885	19	2.0	20	95	5	71	35	25	20	17	1.95
2969277--2969999	60	13.3	49	78	17	647	40	0	12	46	1.44
2969368--2969494	49	2.6	45	100	0	146	39	0	12	48	1.41
2969277--2970029	109	6.9	109	88	4	1124	40	0	12	46	1.44
2969438--2969600	35	5.2	34	61	27	92	41	0	12	46	1.46
2969435--2970003	60	10.2	60	79	14	682	40	0	13	46	1.44
2969607--2969709	35	3.2	35	65	25	100	41	0	12	45	1.42
2969499--2970029	110	4.9	109	93	0	884	40	0	12	46	1.42
2969812--2969845	14	2.4	14	90	0	50	44	0	14	41	1.45
2969826--2969929	35	3.2	35	65	26	93	41	0	12	46	1.42
2969971--2970018	14	3.6	14	78	16	66	37	0	16	45	1.48
2969922--2970019	25	4.0	25	75	6	101	39	0	13	46	1.43
2972146--2972179	15	2.2	16	94	5	61	55	5	0	38	1.24
2972232--2972331	30	3.4	30	88	4	141	46	14	0	40	1.44
2972236--2972290	15	3.6	16	70	20	55	43	14	0	41	1.45
2972468--2972503	17	2.1	17	100	0	72	41	41	0	16	1.48
2972695--2972747	27	2.0	27	100	0	106	41	22	15	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2973020--2973048	12	2.4	12	100	0	58	20	34	34	10	1.87
2975304--2975349	24	1.9	24	82	8	58	43	30	10	15	1.81
2978024--2978215	35	5.5	35	78	7	178	34	19	21	23	1.96
2979428--2979514	34	2.5	33	80	10	86	40	1	2	56	1.19
2979655--2979708	17	3.2	17	72	0	54	31	0	3	64	1.11
2981223--2981267	21	2.1	21	83	0	54	24	37	13	24	1.91
2981276--2981367	21	4.4	21	86	5	114	19	30	27	22	1.98
2981869--2981966	34	2.9	34	89	0	142	55	4	4	36	1.38
2982367--2982609	127	1.9	127	91	1	398	34	18	23	24	1.96
2982680--2982717	8	4.9	8	80	6	51	39	26	0	34	1.57
2994679--2994755	32	2.4	31	85	6	100	48	1	0	50	1.09
2994736--2994769	18	1.9	18	94	5	61	58	0	0	41	0.98
2994710--2994795	29	3.0	28	78	14	86	51	2	0	46	1.13
3009523--3009564	17	2.3	19	88	8	61	42	0	0	57	0.99
3012953--3012986	16	2.1	16	89	10	52	35	14	0	50	1.44
3016339--3016379	21	2.0	21	100	0	82	53	14	9	21	1.70
3022604--3022660	16	3.6	16	88	2	80	42	12	15	29	1.84
3023188--3023213	6	4.3	6	100	0	52	34	34	0	30	1.58
3027691--3027871	77	2.4	76	85	2	231	29	11	24	34	1.90
3029391--3029885	247	2.0	245	96	3	915	33	17	21	27	1.96
3036369--3036458	38	2.4	38	92	7	157	37	40	11	11	1.76
3041103--3041215	57	2.0	57	92	0	190	25	20	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3045572--3045994	54	7.8	54	90	1	605	32	19	20	27	1.97
3048908--3049027	59	2.0	59	86	0	168	28	7	15	48	1.72
3050453--3050564	43	2.6	42	83	5	127	32	19	25	22	1.98
3050503--3050755	85	3.0	85	87	4	350	22	20	26	30	1.98
3050503--3050786	128	2.2	128	85	2	383	24	19	26	30	1.98
3050503--3050781	43	6.5	43	87	3	359	24	19	26	29	1.98
3060155--3060179	12	2.1	12	100	0	50	16	28	24	32	1.96
3061898--3061954	23	2.4	23	80	13	71	40	0	1	57	1.09
3061932--3061996	32	2.0	34	84	6	89	44	1	1	52	1.19
3062116--3062162	22	2.1	23	84	4	60	51	2	0	46	1.13
3062089--3062168	32	2.4	34	80	12	96	48	1	1	48	1.17
3062401--3062481	42	1.9	42	94	0	144	48	11	16	24	1.78
3064745--3064955	108	2.0	108	94	0	368	35	12	3	48	1.58
3067391--3067472	29	2.8	29	94	1	137	32	14	9	42	1.79
3072161--3072242	29	2.8	29	94	1	137	32	14	9	42	1.79
3073557--3073593	19	1.9	19	88	0	56	32	27	16	24	1.96
3073640--3073711	20	3.6	20	88	0	99	25	29	19	26	1.99
3073877--3073927	22	2.3	22	96	0	93	23	43	13	19	1.87
3074313--3074367	19	2.8	20	80	2	67	10	16	23	49	1.77
3075612--3075654	20	2.1	21	87	8	63	48	6	11	32	1.66
3076187--3076342	31	5.0	31	96	1	269	19	19	23	37	1.94
3079669--3079713	21	2.1	21	87	0	63	31	28	24	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3080151--3080193	20	2.1	21	87	8	63	48	6	11	32	1.66
3080726--3080868	31	4.6	31	93	3	234	20	19	22	37	1.94
3083311--3083379	20	3.5	20	87	0	102	36	24	23	15	1.94
3083445--3083525	33	2.5	33	83	4	101	14	17	19	48	1.82
3083508--3083556	20	2.5	20	89	0	71	18	22	20	38	1.93
3084062--3084169	21	5.1	21	71	4	83	18	36	19	25	1.95
3084062--3084171	42	2.6	42	74	8	116	18	37	19	25	1.94
3085404--3085711	42	7.3	42	93	0	535	35	23	19	21	1.96
3092674--3092731	20	2.7	20	81	10	62	24	24	20	31	1.98
3103597--3103623	2	13.5	2	100	0	54	51	0	0	48	1.00
3104529--3104562	16	2.1	16	88	0	50	47	0	2	50	1.16
3117881--3117943	25	2.5	25	100	0	126	26	11	14	47	1.77
3118629--3118666	20	1.9	20	88	0	58	42	10	0	47	1.38
3122183--3122228	15	2.9	15	84	9	56	34	4	0	60	1.16
3125814--3125853	20	2.1	20	86	9	57	45	0	2	52	1.14
3125850--3125885	17	2.1	17	89	0	54	30	0	0	69	0.89
3126406--3126461	21	2.7	21	81	8	69	23	25	17	33	1.96
3126691--3126779	20	4.4	20	87	2	126	35	24	21	17	1.95
3126751--3126844	33	2.8	33	90	3	134	42	20	23	13	1.88
3126856--3126936	33	2.4	33	89	2	117	13	24	20	40	1.89
3127073--3127153	33	2.4	33	89	2	117	13	24	20	40	1.89
3126827--3127261	217	2.0	217	97	0	827	34	20	13	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3127255--3127291	14	2.6	14	86	0	56	48	21	0	29	1.50
3128663--3128755	42	2.2	42	80	3	107	22	17	39	20	1.92
3129235--3129303	20	3.5	20	91	0	102	36	23	20	20	1.95
3129348--3129551	20	10.5	20	86	6	285	20	19	20	40	1.91
3129327--3129551	94	2.4	91	84	10	258	19	19	20	41	1.91
3131426--3131485	20	3.0	20	82	0	66	43	21	16	18	1.88
3131902--3131963	22	3.0	22	71	26	71	17	14	38	29	1.89
3139032--3139273	122	2.0	123	97	0	459	38	19	7	35	1.78
3149060--3149124	33	2.0	33	100	0	130	24	21	35	18	1.96
3151438--3151503	30	2.2	30	84	7	82	50	0	3	46	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!