genome.fa.s8025.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008025.1 Hibiscus syriacus cultivar Beakdansim tig00110500_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2744542

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1393 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2527515--2527700	102	1.8	104	86	2	277	48	2	5	43	1.39
2527531--2527693	28	6.2	27	71	13	117	47	2	6	43	1.43
2527691--2527730	19	2.1	19	100	0	80	47	0	5	47	1.24
2527924--2527989	31	2.2	31	86	2	89	27	28	24	19	1.99
2529124--2529161	18	2.1	18	95	0	67	18	10	0	71	1.14
2542907--2542959	18	2.9	18	91	0	88	33	33	18	13	1.90
2543216--2543267	2	26.0	2	100	0	104	50	0	0	50	1.00
2543579--2543718	63	2.2	63	85	8	178	28	20	18	32	1.96
2543621--2544101	160	3.0	160	97	0	899	28	17	19	34	1.95
2550094--2550152	18	3.3	18	80	0	64	35	32	15	16	1.90
2550700--2550838	63	2.2	64	86	8	187	30	20	17	30	1.96
2551100--2551128	14	2.1	14	100	0	58	51	6	13	27	1.66
2551834--2551865	2	16.0	2	100	0	64	50	0	0	50	1.00
2554584--2554629	21	2.1	22	84	11	60	39	10	10	39	1.76
2554894--2557447	262	9.8	261	86	2	3422	32	17	12	37	1.87
2554894--2557447	782	3.3	779	87	3	3555	32	17	12	37	1.87
2554894--2557443	518	4.9	518	89	2	3588	32	17	12	37	1.87
2559136--2559292	81	1.9	81	85	2	217	25	22	12	38	1.90
2559242--2559428	68	2.7	67	85	3	266	28	24	14	32	1.95
2559645--2560109	59	7.9	58	90	2	662	35	17	11	35	1.87
2560439--2560485	22	2.2	21	85	7	60	29	25	14	29	1.95
2560529--2560602	20	3.6	20	87	7	103	27	29	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2560452--2560672	115	1.9	115	93	0	379	24	25	17	32	1.96
2573844--2573882	21	1.9	20	89	5	60	20	0	38	41	1.53
2578979--2579017	21	1.9	20	89	5	60	20	0	38	41	1.53
2583705--2583746	21	2.0	21	95	0	75	23	21	21	33	1.97
2586933--2586986	24	2.3	24	87	9	76	53	1	3	40	1.29
2590699--2590746	24	2.0	23	88	11	71	54	0	4	41	1.20
2597618--2597707	45	2.0	45	84	4	119	35	24	18	21	1.96
2598382--2598436	28	2.0	28	92	0	92	47	3	43	5	1.44
2601635--2601669	18	1.9	18	88	0	52	28	17	0	54	1.43
2602974--2603063	45	2.0	45	84	4	119	35	24	18	21	1.96
2603738--2603792	28	2.0	28	96	0	101	47	1	45	5	1.36
2605357--2605414	29	2.0	29	83	3	73	51	3	1	43	1.28
2611594--2611655	23	2.9	21	85	7	81	20	35	25	17	1.95
2614443--2614481	20	2.1	19	85	9	53	23	33	25	17	1.96
2617112--2617137	2	13.0	2	100	0	52	50	0	0	50	1.00
2619174--2619231	24	2.4	24	82	0	71	31	12	20	36	1.89
2623451--2623476	9	2.9	9	100	0	52	42	0	0	57	0.98
2628982--2629029	21	2.2	22	88	3	71	22	0	0	77	0.78
2628982--2629024	17	2.5	18	88	7	63	23	0	0	76	0.78
2628984--2629030	11	4.2	11	82	17	53	21	0	0	78	0.75
2629998--2630022	9	2.8	9	100	0	50	12	0	0	88	0.53
2630259--2630285	13	2.1	13	100	0	54	37	29	7	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2634516--2634585	11	6.5	11	71	12	56	25	0	1	72	0.92
2637000--2637049	23	2.2	23	85	0	73	30	26	28	16	1.96
2637758--2637831	20	3.8	20	71	25	61	22	29	14	32	1.94
2648685--2648722	2	19.5	2	94	5	69	50	0	0	50	1.00
2656844--2657024	89	2.0	89	90	4	285	40	7	21	30	1.80
2656844--2657024	45	4.1	45	92	2	278	40	7	21	30	1.80
2659919--2659944	2	13.0	2	100	0	52	50	0	0	50	1.00
2664027--2664207	45	4.0	44	90	5	258	40	7	20	30	1.81
2666776--2666833	23	2.6	22	86	5	73	75	3	0	20	0.94
2666775--2666833	5	12.0	5	71	10	50	74	3	0	22	0.96
2668673--2668711	3	13.7	3	84	10	55	69	0	0	30	0.89
2673455--2673885	161	2.7	159	82	5	519	37	17	18	27	1.93
2686305--2686459	77	2.0	76	93	1	265	29	26	9	34	1.88
2692368--2692409	20	2.0	21	86	4	59	23	16	23	35	1.95
2692732--2692977	121	2.1	118	84	6	318	41	10	19	28	1.85
2700823--2700911	26	3.4	26	100	0	178	34	26	17	20	1.95
2704219--2704309	20	4.9	20	68	20	72	34	5	15	45	1.69
2704218--2704367	53	2.9	52	94	3	257	33	6	12	48	1.64
2704324--2704363	20	2.0	20	90	0	62	40	5	7	47	1.54
2708935--2709025	20	4.9	20	68	20	72	34	5	15	45	1.69
2708934--2709083	53	2.9	52	94	3	257	34	6	12	48	1.65
2709040--2709079	20	2.0	20	95	0	71	42	5	7	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2716422--2716471	26	1.9	26	92	8	84	26	12	16	46	1.81
2720631--2720662	16	2.0	16	100	0	64	25	18	6	50	1.70
2720737--2720820	20	4.3	19	89	5	116	21	21	9	47	1.79
2720747--2720833	20	4.3	20	89	2	113	25	20	6	47	1.75
2720796--2720839	20	2.2	20	83	0	52	31	25	2	40	1.68
2735489--2735615	66	1.9	66	85	0	173	37	22	18	22	1.94
2736278--2736847	279	2.0	282	96	2	1049	28	15	17	38	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!