genome.fa.s8025.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008025.1 Hibiscus syriacus cultivar Beakdansim tig00110500_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2744542

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  5  of  12  ( 1393 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
970067--970209	74	1.9	74	91	0	232	37	20	20	21	1.94
970211--970252	19	2.2	19	86	0	57	14	16	28	40	1.88
970220--970256	19	1.9	19	94	0	65	8	16	27	48	1.74
970261--970337	20	3.9	20	85	8	104	25	18	19	36	1.94
970320--970366	20	2.3	20	85	0	58	17	12	23	46	1.82
970252--970346	40	2.4	40	75	10	106	23	17	20	38	1.93
970333--970375	20	2.2	20	100	0	86	13	9	23	53	1.69
970859--970962	21	5.0	21	75	8	95	20	38	19	22	1.94
970853--970964	42	2.7	42	80	2	127	19	39	18	22	1.93
972338--972401	30	2.1	30	97	0	119	31	3	10	54	1.51
972499--972722	20	11.9	20	81	11	240	21	20	22	34	1.97
972461--972714	40	7.0	34	74	14	195	20	21	22	35	1.96
972519--972620	53	1.9	54	95	2	188	19	20	24	35	1.96
972592--972694	54	1.9	54	89	0	161	19	21	23	35	1.96
972456--972714	74	3.5	74	89	2	387	20	21	22	35	1.96
974935--974971	14	2.6	14	91	4	56	5	21	21	51	1.68
975156--975209	24	2.2	24	93	0	90	40	20	18	20	1.91
976030--976157	20	6.3	20	85	5	134	22	21	26	28	1.99
976063--976178	21	5.6	21	83	6	105	21	22	25	30	1.99
976043--976178	61	2.2	61	85	6	150	22	22	26	29	1.99
976030--976211	82	2.2	82	83	5	217	23	21	24	30	1.99
976187--976240	21	2.6	20	82	8	63	33	20	18	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
977243--977370	59	2.2	59	82	0	148	32	20	16	30	1.94
978955--979012	31	1.9	31	96	3	109	37	34	3	24	1.72
981607--981631	11	2.3	11	100	0	50	32	16	0	52	1.44
981697--981758	31	2.0	31	96	3	117	38	35	3	22	1.71
986634--986914	131	2.1	131	83	3	352	33	20	17	28	1.95
990008--990046	20	2.0	20	85	10	53	12	0	17	69	1.19
990608--990662	23	2.4	23	84	0	74	14	20	16	49	1.80
995095--995133	20	2.0	20	84	0	51	69	12	0	17	1.19
1000784--1000842	12	4.8	12	77	22	68	83	0	16	0	0.66
1000781--1000845	18	3.5	18	78	13	78	81	0	18	0	0.69
1000781--1000845	20	3.5	17	75	17	67	81	0	18	0	0.69
1001882--1002267	83	4.7	83	90	4	624	27	13	22	36	1.92
1001882--1002262	159	2.3	161	94	3	667	27	14	22	36	1.92
1002997--1003843	114	7.5	114	89	5	1111	37	13	19	29	1.90
1003581--1003635	16	3.2	17	73	17	60	47	9	23	20	1.78
1003610--1003827	116	1.9	115	87	8	320	35	13	20	29	1.91
1003974--1004083	3	37.0	3	82	5	134	36	3	0	59	1.21
1006257--1006315	29	2.0	29	100	0	118	49	13	13	23	1.78
1006261--1006340	23	3.2	23	87	10	97	47	11	15	26	1.78
1015379--1015415	19	1.9	19	100	0	74	21	2	0	75	0.92
1015453--1015519	3	22.7	3	78	14	68	28	1	0	70	0.96
1015462--1015521	20	3.0	20	87	7	77	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1015445--1015522	17	4.6	16	77	17	70	28	1	0	70	0.95
1016681--1016713	17	1.9	17	88	11	50	60	0	0	39	0.97
1020009--1020063	24	2.2	25	87	3	76	63	14	1	20	1.39
1027101--1027206	31	3.4	30	77	11	106	31	16	17	34	1.92
1031635--1031740	21	5.0	21	83	4	115	31	24	14	30	1.94
1032765--1032797	17	2.0	17	88	5	50	36	18	6	39	1.75
1033208--1033259	20	2.6	20	78	6	52	28	28	15	26	1.96
1036453--1036485	17	2.0	17	88	5	50	36	18	6	39	1.75
1036901--1036982	20	4.0	21	73	19	75	30	26	13	29	1.94
1041059--1041158	32	3.1	32	77	5	103	20	9	27	44	1.81
1041625--1041754	52	2.5	51	93	3	224	29	6	4	60	1.41
1042880--1042925	23	2.0	23	100	0	92	34	13	21	30	1.91
1048505--1048535	14	2.2	14	94	0	53	19	25	12	41	1.87
1049585--1050261	46	14.5	46	86	3	868	41	12	19	25	1.87
1050014--1050124	57	1.9	57	88	0	168	38	11	19	29	1.88
1049922--1050206	149	1.9	149	86	1	410	41	12	19	26	1.87
1049875--1050261	195	2.0	196	85	0	533	41	12	19	26	1.86
1062769--1062824	24	2.4	24	85	8	71	50	19	3	26	1.64
1066683--1066749	20	3.5	20	68	11	59	53	1	2	41	1.25
1068211--1068269	24	2.5	24	94	0	100	6	32	23	37	1.81
1068444--1068591	37	4.1	37	71	14	130	45	4	8	41	1.55
1068422--1068587	72	2.3	74	80	7	187	44	4	7	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1068566--1068644	29	2.7	29	88	3	106	41	6	5	46	1.51
1068709--1068785	3	25.7	3	82	10	86	27	2	1	68	1.10
1068699--1068785	12	7.6	11	78	13	72	26	2	1	70	1.07
1069963--1069992	13	2.2	14	94	5	53	23	0	0	76	0.78
1071975--1072018	18	2.4	19	85	11	65	11	13	9	65	1.46
1075328--1076172	165	5.1	164	82	4	853	30	24	20	24	1.99
1075328--1076164	249	3.4	247	83	4	1013	29	24	20	24	1.99
1075328--1076148	414	2.0	415	92	1	1367	29	24	20	24	1.99
1076747--1076979	37	6.3	36	80	8	254	45	3	6	43	1.49
1076747--1076979	75	3.1	73	82	8	274	45	3	6	43	1.49
1076947--1077042	29	3.2	28	82	10	111	42	5	4	47	1.45
1076954--1077033	30	2.7	29	88	5	108	41	6	5	47	1.50
1077105--1077190	3	28.7	3	83	9	104	27	2	2	67	1.15
1078379--1078412	13	2.5	13	95	4	59	23	0	0	76	0.79
1078373--1078412	18	2.2	18	90	4	62	25	0	0	75	0.81
1079819--1079890	28	2.5	28	80	13	83	19	22	6	51	1.70
1080051--1080298	63	4.0	64	79	6	181	40	12	10	36	1.77
1080083--1080298	63	3.5	62	79	7	217	40	12	11	36	1.78
1085527--1085846	162	2.0	159	93	3	545	25	19	16	38	1.92
1085833--1085869	18	2.0	19	89	5	58	29	18	5	45	1.72
1087002--1087041	21	1.9	21	94	0	71	72	0	15	12	1.12
1087003--1087041	11	3.6	11	79	6	53	74	0	12	12	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1092558--1092602	19	2.3	20	92	3	74	17	15	22	44	1.86
1093396--1093430	8	4.2	8	96	3	61	62	0	14	22	1.31
1100093--1100158	29	2.3	29	86	5	89	37	6	19	36	1.77
1101072--1101222	40	3.8	40	93	0	248	33	29	15	21	1.94
1101509--1101578	31	2.3	31	82	7	81	38	20	5	35	1.76
1103072--1103101	15	1.9	16	93	6	53	56	0	0	43	0.99
1104548--1104596	20	2.5	19	80	9	55	32	14	22	30	1.93
1115557--1115581	11	2.3	11	100	0	50	16	36	8	40	1.77
1134160--1136821	4	672.5	4	97	2	5110	25	0	25	49	1.50
1137995--1138033	4	9.8	4	94	0	69	28	0	46	25	1.53
1145313--1145343	15	2.1	15	93	0	53	48	3	12	35	1.58
1145928--1145963	17	2.1	17	94	0	63	27	8	25	38	1.84
1147194--1147224	2	15.5	2	100	0	62	51	0	0	48	1.00
1152608--1152645	20	1.9	20	88	0	58	26	26	21	26	1.99
1156823--1157267	219	2.0	221	90	4	698	28	13	17	41	1.86
1156833--1157307	225	2.2	219	83	8	556	28	13	18	40	1.88
1170981--1171026	22	2.0	23	87	4	67	56	28	4	10	1.53
1171740--1172095	135	2.6	135	84	3	466	33	20	16	29	1.95
1173463--1173513	20	2.5	22	90	9	81	5	7	0	86	0.71
1173468--1173504	12	3.2	12	92	7	60	5	5	0	89	0.60
1182963--1183063	46	2.2	47	80	8	109	42	20	6	29	1.78
1187958--1187992	13	2.7	13	95	0	61	51	0	37	11	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1198097--1198145	21	2.3	21	100	0	98	55	14	14	16	1.70
1199358--1199449	38	2.4	38	88	1	130	36	18	17	27	1.93
1199379--1199473	38	2.7	35	80	15	99	35	18	17	27	1.94
1199506--1199588	20	4.2	20	73	11	80	26	20	21	31	1.98
1207857--1210107	749	3.0	749	99	0	4457	37	11	19	31	1.88
1211089--1211190	24	4.2	24	70	5	71	23	8	16	50	1.73
1211124--1211195	24	3.0	24	79	0	81	22	8	18	51	1.72
1211978--1212013	18	2.1	17	89	5	54	30	2	5	61	1.33
1212486--1212525	21	1.9	21	100	0	80	45	10	5	40	1.60
1213568--1213623	22	2.6	22	86	10	73	42	16	14	26	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12