genome.fa.s8025.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008025.1 Hibiscus syriacus cultivar Beakdansim tig00110500_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2744542

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  2  of  12  ( 1393 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317541--317603	10	5.7	11	81	12	60	80	0	12	6	0.88
318931--319193	82	3.2	82	85	1	348	35	20	18	26	1.95
318975--319261	82	3.5	81	80	5	301	37	17	19	24	1.94
319626--319651	13	2.0	13	100	0	52	46	7	7	38	1.61
323724--323825	21	4.8	21	91	3	136	45	19	17	17	1.86
328251--328276	11	2.4	11	100	0	52	92	0	7	0	0.39
328264--328304	15	2.8	15	75	17	50	80	0	7	12	0.90
330405--330510	37	2.9	37	83	6	119	34	19	18	26	1.95
330400--330510	36	3.1	36	83	6	118	35	19	18	27	1.95
330630--330731	42	2.5	41	80	1	114	26	21	20	31	1.98
330581--330985	201	2.0	201	93	0	695	32	16	20	30	1.95
331043--331222	42	4.3	41	77	2	180	26	20	22	31	1.98
330831--331440	295	2.1	296	92	0	1024	31	16	20	30	1.95
331043--331226	83	2.2	83	94	0	323	26	20	21	30	1.98
331339--331451	42	2.7	42	79	2	120	24	23	23	29	1.99
331126--331549	213	2.0	213	92	0	715	33	14	21	30	1.93
337775--337803	8	3.6	8	100	0	58	10	0	0	89	0.48
339963--340066	31	3.4	31	97	0	190	42	23	17	17	1.89
345118--345486	194	1.9	193	82	4	465	39	13	15	31	1.86
346611--347378	225	3.4	224	90	2	1125	33	15	13	37	1.86
348042--348074	17	1.9	17	88	11	50	60	3	0	36	1.12
348031--348084	23	2.3	23	75	12	58	51	3	1	42	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348862--348898	13	2.6	15	79	16	51	37	0	2	59	1.12
348892--348931	14	2.9	14	82	17	57	22	5	2	70	1.19
352191--352221	15	2.1	15	93	0	53	32	19	9	38	1.84
359527--359602	29	2.8	27	83	15	86	77	0	17	5	0.94
359527--359610	9	9.0	9	80	7	78	78	0	16	4	0.91
361243--361287	24	1.9	23	82	13	56	48	6	26	17	1.72
361098--361763	113	5.8	113	83	6	686	37	13	19	28	1.91
361563--361851	124	2.4	121	85	7	358	42	15	19	22	1.88
361993--362044	3	17.7	3	88	11	81	32	0	0	67	0.91
362509--362535	12	2.2	12	100	0	54	81	7	11	0	0.87
364145--364737	225	2.6	224	84	5	700	34	13	12	39	1.83
364486--364681	109	1.8	109	82	5	254	34	12	12	39	1.82
364864--364902	17	2.3	17	86	8	53	33	17	0	48	1.48
368427--368603	31	5.7	30	78	7	149	29	29	26	14	1.95
368437--368603	62	2.7	62	84	5	212	29	30	25	14	1.95
368420--368603	93	2.0	93	82	4	228	28	29	26	15	1.96
370627--370665	18	2.2	18	90	0	60	10	33	33	23	1.88
370643--370732	39	2.3	39	78	3	101	8	33	36	21	1.84
370644--370744	13	7.8	13	71	4	60	8	32	36	21	1.85
370743--370780	19	2.0	19	89	0	58	18	28	28	23	1.98
371539--371603	30	2.3	28	80	15	71	46	6	13	33	1.69
374791--374845	18	3.1	18	86	2	76	12	21	14	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381058--381115	19	3.2	18	80	7	55	44	13	0	41	1.44
381083--381127	19	2.4	19	92	0	72	48	20	2	28	1.61
381506--381550	23	2.0	23	82	8	56	44	0	2	53	1.13
383134--383462	45	7.3	45	89	1	509	30	20	6	41	1.78
387576--387697	59	2.1	58	80	11	133	44	14	4	36	1.67
387690--388041	39	8.8	39	80	7	384	42	14	6	36	1.72
387820--387911	47	1.9	48	91	2	150	40	15	7	36	1.76
387705--388041	126	2.8	118	81	8	401	41	14	6	37	1.73
387703--388028	165	2.0	165	84	3	433	42	14	7	36	1.74
387986--388345	97	3.8	97	84	4	453	41	13	6	37	1.72
388388--388749	57	6.4	58	77	13	181	45	12	5	36	1.66
388549--388768	115	1.9	114	87	6	320	43	14	8	34	1.75
388549--388768	58	3.8	58	88	5	313	43	14	8	34	1.75
388924--389076	45	3.4	43	82	10	173	39	18	9	32	1.82
391281--391483	95	2.1	96	79	4	223	38	10	23	27	1.88
391833--392202	45	8.2	45	87	1	510	45	12	21	20	1.84
398335--398534	95	2.1	96	86	4	280	41	11	21	26	1.87
398887--399212	45	7.2	45	91	0	499	43	11	23	22	1.85
404765--404897	24	5.5	24	86	1	160	51	16	11	20	1.74
404796--404880	12	7.2	11	71	15	62	50	16	14	18	1.78
410134--410179	23	2.0	23	100	0	92	34	4	13	47	1.62
410972--411029	24	2.4	25	83	13	77	53	1	5	39	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410972--411033	25	2.5	26	82	17	80	53	1	4	40	1.32
415459--415513	3	18.3	3	100	0	110	32	0	0	67	0.91
430097--430470	187	2.0	188	98	1	734	37	19	9	33	1.84
433493--433532	12	3.3	12	92	0	62	5	50	17	27	1.67
433702--433743	22	1.9	22	90	0	66	47	2	2	47	1.28
433810--433879	8	9.1	8	73	20	51	54	2	8	34	1.46
433775--433833	22	2.9	20	77	22	61	52	3	6	37	1.45
433818--433907	22	3.6	22	70	28	65	55	3	6	34	1.42
433815--433917	52	2.0	53	88	5	156	54	2	5	36	1.40
435439--435465	2	13.5	2	100	0	54	51	0	0	48	1.00
435486--435583	8	13.1	8	79	14	120	53	2	10	34	1.47
435484--435583	22	4.5	21	87	8	137	53	2	10	35	1.46
435484--435583	44	2.2	44	96	1	182	53	2	10	35	1.46
435486--435580	15	6.4	15	78	10	106	52	2	10	34	1.48
435598--435917	13	22.3	15	65	24	88	38	9	1	50	1.46
435598--435687	22	4.2	22	67	21	66	37	10	1	51	1.43
435604--435922	144	2.2	144	87	4	450	37	9	1	50	1.46
435743--436066	22	14.9	22	67	22	136	36	8	2	51	1.47
435802--435981	40	4.2	42	69	22	108	40	8	2	48	1.47
435802--435887	38	2.3	38	82	8	104	43	5	1	50	1.34
435743--435924	14	12.6	15	67	27	85	36	8	1	53	1.41
435821--436016	94	2.1	93	87	2	277	38	8	2	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435866--436015	30	4.8	30	66	18	92	37	8	2	51	1.47
436028--436072	24	1.9	23	90	4	72	40	8	0	51	1.33
436100--436154	7	7.7	7	75	16	51	56	1	1	40	1.21
436174--436252	24	3.3	24	77	10	90	39	7	3	49	1.49
436169--436268	51	2.0	47	83	11	121	41	6	4	49	1.46
436169--436284	49	2.4	47	80	8	110	38	6	4	50	1.49
436864--436897	2	17.0	2	87	0	50	44	0	5	50	1.26
436858--436920	14	4.4	14	76	9	56	44	1	9	44	1.46
436373--437431	531	2.0	525	88	6	1593	33	12	6	48	1.65
437456--437618	14	11.3	14	69	19	70	53	1	8	36	1.39
437370--437553	20	8.8	20	84	7	136	52	0	5	42	1.24
437370--437459	2	45.0	2	100	0	180	50	0	0	50	1.00
437446--437618	96	1.8	93	85	8	242	53	1	8	36	1.38
437512--437619	21	4.6	21	70	25	58	55	1	5	37	1.34
437381--437618	22	11.6	20	79	13	99	52	0	5	40	1.31
437613--437677	21	3.2	20	72	18	64	44	4	1	49	1.32
445085--445157	27	2.7	27	75	8	69	41	6	12	39	1.69
445803--445900	19	5.4	18	76	15	87	80	6	12	1	0.94
445815--445902	19	4.9	18	78	12	92	82	5	10	1	0.87
445808--445903	35	2.7	35	84	9	124	82	5	11	1	0.88
445813--445902	47	2.0	45	84	8	119	83	5	10	1	0.86
445813--445873	1	61.0	1	75	0	50	86	4	8	0	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445811--445905	10	9.3	11	72	16	55	82	5	11	1	0.89
445804--445903	15	5.8	18	70	21	72	82	5	12	1	0.88
446643--446699	16	3.5	15	76	21	53	7	14	0	78	0.94
446643--446703	18	3.5	17	73	20	54	6	14	0	78	0.94
446658--446695	8	4.6	8	90	3	58	10	13	0	76	1.02
447703--447830	36	3.6	35	76	9	116	32	18	11	37	1.87
448104--448493	131	3.0	129	83	2	413	28	30	15	25	1.96
450891--450940	3	17.0	3	79	4	57	36	0	2	62	1.07
453120--453299	43	4.2	42	87	1	261	26	21	23	28	1.99
453129--453296	85	2.0	86	91	1	275	25	19	24	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12