genome.fa.s8025.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008025.1 Hibiscus syriacus cultivar Beakdansim tig00110500_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2744542

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  8  of  12  ( 1393 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1646955--1647312	158	2.3	158	84	2	450	47	6	15	29	1.71
1647694--1647743	26	1.9	26	88	8	75	54	2	2	42	1.23
1649277--1649321	22	2.0	22	87	12	65	28	8	17	44	1.79
1655557--1655629	34	2.1	34	92	0	119	52	6	4	36	1.48
1667695--1667758	35	1.9	33	87	9	94	31	14	7	46	1.72
1667832--1667908	36	2.3	34	80	10	86	38	5	9	46	1.58
1667691--1668420	142	5.1	144	85	3	886	36	16	9	37	1.81
1692187--1692415	118	2.0	114	96	3	422	38	24	7	29	1.83
1701114--1701153	18	2.4	17	88	12	57	0	10	17	72	1.11
1705241--1705272	1	32.0	1	93	0	55	0	3	0	96	0.20
1708704--1708741	6	6.3	6	87	0	58	2	44	2	50	1.30
1710557--1710625	23	3.0	23	80	0	66	27	23	26	23	2.00
1711902--1711933	11	2.9	11	100	0	64	56	0	37	6	1.25
1711901--1711937	11	3.3	12	88	11	53	59	0	35	5	1.20
1712973--1713016	19	2.3	19	92	0	70	34	13	11	40	1.81
1716837--1717045	65	3.2	63	82	8	235	27	16	24	31	1.97
1716949--1716995	19	2.5	19	83	10	62	25	17	31	25	1.97
1717215--1717254	20	2.0	21	85	14	57	45	7	5	42	1.54
1718518--1718572	20	2.8	20	80	5	67	21	18	27	32	1.96
1724351--1724514	65	2.5	64	84	1	220	28	15	26	29	1.96
1724465--1724511	19	2.5	19	83	10	62	25	17	31	25	1.97
1724731--1724770	20	2.0	21	85	14	57	45	7	5	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1731267--1731737	180	2.6	180	88	2	658	42	14	15	27	1.86
1731658--1731704	20	2.4	19	82	10	67	53	10	17	19	1.72
1731667--1731709	20	2.3	19	88	11	63	51	11	16	20	1.75
1733928--1733992	21	3.1	21	90	0	94	41	9	30	18	1.82
1734026--1734091	33	2.0	33	90	0	105	28	0	48	22	1.51
1735882--1735930	19	2.6	19	96	0	89	32	2	10	55	1.45
1736043--1737801	200	8.9	200	94	2	3143	36	15	17	31	1.91
1736813--1737387	179	3.1	179	88	7	819	36	15	17	30	1.91
1736613--1737787	379	3.0	380	91	5	1958	36	15	17	31	1.91
1736043--1737801	579	3.0	579	94	3	2930	36	15	17	31	1.91
1740237--1740997	183	4.2	183	96	0	1378	35	14	16	34	1.89
1743725--1743769	22	2.0	22	83	8	56	42	11	8	37	1.72
1743786--1743835	23	2.2	23	92	0	82	34	6	22	38	1.78
1744137--1744181	22	2.0	22	83	8	56	42	11	8	37	1.72
1744199--1744248	23	2.2	23	92	0	82	34	6	22	38	1.78
1743528--1745201	414	4.0	414	96	2	2953	42	7	10	39	1.68
1744613--1744662	23	2.2	23	92	0	82	34	6	22	38	1.78
1745027--1745099	23	3.2	23	90	0	110	35	5	20	38	1.76
1751950--1752019	31	2.3	31	97	0	131	38	2	37	21	1.68
1752460--1752507	19	2.6	18	75	12	51	66	6	2	25	1.26
1754075--1754127	2	26.5	2	100	0	106	50	0	0	49	1.00
1758305--1758331	4	6.8	4	100	0	54	25	0	0	74	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1760609--1760672	32	2.0	32	85	14	87	43	4	14	37	1.66
1761343--1761405	29	2.2	29	82	5	83	60	1	11	26	1.40
1762209--1762262	25	2.2	25	96	0	99	40	29	16	12	1.86
1764600--1764668	23	3.0	23	82	0	93	33	24	24	17	1.96
1770759--1770865	31	3.5	31	73	7	110	33	30	22	13	1.92
1777843--1777883	18	2.3	18	100	0	82	17	21	43	17	1.87
1782011--1782088	19	4.2	17	76	15	75	16	2	3	76	1.04
1782011--1782083	36	2.0	36	81	5	85	16	2	4	76	1.05
1795333--1795422	34	2.6	34	89	0	135	40	24	12	23	1.89
1797587--1797721	5	27.6	5	74	18	90	17	1	2	77	0.97
1797587--1797721	18	7.7	17	74	15	89	17	1	2	77	0.97
1797599--1797702	27	3.7	26	81	12	100	15	0	3	79	0.92
1797600--1797721	28	4.7	26	73	22	80	18	0	3	77	0.95
1802130--1802187	19	3.1	19	84	0	71	46	6	18	27	1.75
1802140--1802212	19	3.8	19	80	3	67	45	8	20	26	1.79
1809443--1809532	44	2.0	44	100	0	180	45	11	8	34	1.71
1809686--1809738	21	2.5	21	81	6	72	20	26	18	33	1.96
1809666--1809862	81	2.4	81	83	2	243	28	22	17	31	1.97
1809815--1809859	20	2.2	20	84	7	56	33	22	20	24	1.97
1809728--1809859	40	3.3	38	69	14	104	31	21	18	28	1.96
1810069--1810121	27	1.9	27	84	3	70	39	32	7	20	1.81
1810371--1810455	19	4.7	19	69	20	65	47	23	18	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1810451--1810582	19	7.1	19	80	11	130	13	22	19	43	1.86
1810456--1810557	52	1.9	53	88	2	152	12	22	21	43	1.86
1812385--1812417	17	1.9	17	88	11	50	24	15	15	45	1.84
1812269--1812454	92	2.0	90	87	7	266	22	11	17	48	1.79
1812728--1812794	21	3.2	21	66	6	55	23	35	20	19	1.95
1812676--1812794	42	2.8	42	81	5	107	22	36	18	22	1.95
1814141--1814176	14	2.6	14	95	0	63	30	0	25	44	1.54
1814283--1814398	19	6.6	19	73	20	101	43	21	21	13	1.87
1814283--1814381	33	3.0	32	91	4	162	43	20	22	14	1.87
1814395--1814513	33	3.6	32	84	8	168	14	21	19	44	1.86
1816807--1816844	12	3.1	12	88	3	58	0	23	0	76	0.79
1817019--1817072	24	2.2	24	90	0	81	40	20	16	22	1.91
1817890--1817981	20	4.6	20	73	2	76	39	21	18	20	1.93
1818195--1818262	20	3.4	20	70	8	66	41	23	19	16	1.90
1818289--1818356	19	3.9	18	83	12	81	13	20	17	48	1.80
1818293--1818366	19	4.5	16	83	16	66	13	20	18	47	1.82
1819912--1820003	41	2.2	42	88	5	134	22	16	40	20	1.91
1819938--1820003	21	3.1	21	70	10	62	24	15	40	19	1.90
1819913--1820003	42	2.2	41	88	5	130	23	16	39	20	1.92
1820392--1820437	20	2.3	20	92	0	74	15	23	26	34	1.94
1820972--1821019	18	2.7	18	93	0	87	14	12	45	27	1.81
1822338--1822396	20	3.0	20	87	0	73	44	22	18	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1822650--1822693	22	2.0	22	100	0	88	18	13	45	22	1.84
1822886--1822972	20	4.3	20	85	0	102	26	14	29	28	1.95
1822983--1823035	21	2.5	20	76	8	61	35	18	24	20	1.95
1823201--1823850	183	3.6	182	87	2	876	47	11	13	26	1.78
1823680--1824016	161	2.1	162	84	2	428	45	10	13	29	1.77
1825029--1825164	36	3.8	36	90	1	211	15	29	32	22	1.95
1825529--1825841	155	2.0	152	90	5	466	39	28	6	25	1.80
1826241--1826276	14	2.5	15	90	4	56	66	0	11	22	1.22
1826576--1826618	18	2.4	18	84	0	59	69	0	9	20	1.15
1828151--1828179	9	3.2	9	100	0	58	31	10	0	58	1.31
1828769--1828807	18	2.2	18	85	0	51	7	25	30	35	1.84
1830386--1830469	23	3.7	23	82	3	91	20	23	30	25	1.98
1834130--1834181	21	2.5	21	96	0	95	23	15	9	51	1.72
1834143--1834188	21	2.2	21	88	0	65	19	15	13	52	1.75
1837334--1837938	270	2.2	269	88	4	889	26	17	22	34	1.95
1837911--1838152	123	2.0	123	80	1	279	26	12	21	39	1.89
1845306--1845370	14	4.9	13	72	12	53	76	1	3	18	0.99
1845566--1845608	18	2.4	18	92	0	68	72	0	6	20	1.08
1847098--1847177	24	3.4	24	81	10	94	31	22	23	22	1.99
1847143--1847200	23	2.5	23	80	5	64	34	22	17	25	1.96
1848362--1848395	17	1.9	17	88	5	50	38	14	26	20	1.91
1853989--1854039	23	2.2	23	85	0	66	29	19	27	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1855516--1855563	19	2.6	19	83	9	55	25	22	20	31	1.98
1857486--1857525	21	1.9	21	89	0	62	55	7	7	30	1.56
1861236--1861316	24	3.5	24	70	20	75	22	24	23	29	1.99
1862590--1862633	21	2.1	21	82	0	52	9	43	15	31	1.79
1863843--1863891	19	2.6	19	84	9	57	24	28	20	26	1.99
1866332--1866375	5	8.8	5	92	0	61	18	0	13	68	1.22
1871369--1871426	20	2.6	22	84	10	66	31	20	22	25	1.98
1872980--1873040	23	2.6	24	74	5	63	19	26	26	27	1.99
1875319--1875380	20	2.9	22	79	16	67	32	19	20	27	1.97
1880211--1880268	20	2.6	22	84	10	66	31	20	22	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12