genome.fa.s8041.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008041.1 Hibiscus syriacus cultivar Beakdansim tig00110528_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4970990

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  1  of  21  ( 2430 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16--71	23	2.4	24	82	8	62	46	5	1	46	1.36
191--220	15	1.9	16	93	6	53	40	13	23	23	1.90
15335--15928	55	10.9	55	78	11	433	28	20	20	30	1.97
15360--15928	110	5.2	110	82	7	603	28	20	20	30	1.97
15363--15928	219	2.6	211	81	8	602	28	20	19	31	1.97
15759--15910	48	3.0	48	78	15	189	27	24	20	27	1.99
15807--15946	55	2.5	55	83	4	158	30	22	18	29	1.97
15485--15950	158	2.9	157	81	7	388	29	21	19	29	1.98
15999--16070	36	2.0	36	91	0	117	20	19	20	38	1.93
16159--16264	37	2.9	37	94	0	176	22	19	18	38	1.93
18047--18224	97	1.8	99	86	4	263	32	18	16	33	1.93
22284--22336	22	2.5	22	96	3	99	30	16	9	43	1.80
23208--23237	2	15.5	2	93	6	53	50	0	0	50	1.00
27559--27637	24	3.2	24	89	8	106	37	22	17	21	1.94
27828--27860	16	2.0	17	88	5	50	42	9	9	39	1.68
36405--36434	13	2.3	13	94	0	51	40	6	13	40	1.71
37673--37753	26	3.2	26	94	3	139	34	29	14	20	1.93
38630--38698	31	2.3	31	84	2	95	33	18	10	37	1.85
39300--39324	11	2.3	11	100	0	50	32	16	0	52	1.44
43420--43541	64	1.9	64	81	6	149	34	19	19	26	1.96
43849--43884	12	3.0	12	87	0	54	30	8	25	36	1.85
49896--49927	12	2.7	12	95	0	55	34	3	25	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49908--49960	23	2.2	26	86	10	76	39	5	22	32	1.78
52901--53022	64	1.9	64	83	3	156	34	20	19	25	1.96
53334--53367	12	2.8	12	81	0	50	32	5	23	38	1.79
59789--59893	40	2.6	40	84	0	147	35	27	17	20	1.94
59875--59924	26	2.0	25	96	4	91	32	32	16	20	1.94
62671--62699	2	14.5	2	100	0	58	51	0	0	48	1.00
64273--64472	104	1.9	106	82	4	253	30	18	19	32	1.95
67997--68034	18	2.1	19	90	5	60	52	2	0	44	1.14
68070--68310	16	14.4	16	67	20	84	48	3	0	48	1.18
68085--68158	33	2.2	35	83	9	91	50	4	0	45	1.20
68070--68143	2	38.5	2	78	15	59	47	4	0	48	1.20
68137--68185	15	3.4	14	82	2	53	46	6	0	46	1.27
68070--68203	14	8.6	14	68	21	56	47	4	0	48	1.22
68093--68309	68	3.1	72	77	15	213	49	3	0	47	1.19
68269--68316	2	24.5	2	87	4	62	52	0	0	47	1.00
70767--70884	35	3.3	35	78	9	123	36	19	12	31	1.89
72494--72534	20	2.0	21	90	4	66	53	4	9	31	1.55
73145--73213	30	2.3	30	100	0	138	30	14	27	27	1.95
81937--82533	55	10.9	55	84	2	702	33	19	17	29	1.95
81937--82533	218	2.7	218	86	5	760	33	19	17	29	1.95
83041--83097	20	2.8	21	84	10	73	24	24	19	31	1.98
89252--89754	55	9.3	55	84	5	645	32	19	18	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96464--96966	55	9.3	55	84	5	645	32	19	18	29	1.96
108166--108214	24	2.1	22	81	7	53	63	16	14	6	1.49
112211--112260	20	2.4	21	80	3	57	32	24	14	30	1.94
115933--115961	11	2.5	12	94	5	51	41	0	31	27	1.56
123116--123193	37	2.1	37	95	0	138	43	16	25	14	1.85
131776--131816	16	2.8	15	79	13	50	58	0	17	24	1.38
133848--133913	3	22.0	3	81	6	80	39	1	0	59	1.07
139403--139434	15	2.1	15	94	0	55	25	18	9	46	1.79
149273--149321	20	2.3	20	86	10	62	16	16	26	40	1.89
154159--154199	14	3.0	14	83	16	59	80	0	17	2	0.82
161586--161632	24	2.0	24	87	8	69	29	2	10	57	1.44
168855--168897	20	2.1	21	87	8	63	18	13	0	67	1.23
168854--168903	20	2.5	20	75	15	59	18	18	0	64	1.30
179575--179722	74	2.0	74	100	0	296	37	16	18	27	1.92
180141--180188	6	7.3	6	82	17	60	2	18	0	79	0.84
180161--180191	16	1.9	16	93	0	53	3	22	0	74	0.96
183261--183288	14	2.0	14	100	0	56	7	7	28	57	1.52
191123--191156	6	5.7	6	92	0	50	20	0	8	70	1.13
192943--192982	17	2.2	17	86	8	53	45	5	0	50	1.23
197326--197364	21	1.9	20	84	5	51	30	25	15	28	1.96
204256--204659	200	2.0	204	98	1	780	30	14	19	34	1.92
212390--212423	17	1.9	18	88	5	52	32	23	5	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212363--212540	94	1.9	94	81	4	216	27	20	13	38	1.90
217530--217569	20	2.0	20	90	0	62	20	25	35	20	1.96
221683--221707	6	4.2	6	100	0	50	16	32	16	36	1.90
227811--227863	26	2.0	26	96	0	97	18	16	16	47	1.83
237329--238291	473	2.0	473	99	0	1901	34	16	20	29	1.94
238810--238931	40	3.0	40	98	0	235	40	15	15	28	1.88
240489--240553	33	2.0	33	93	0	112	33	21	13	30	1.92
246905--246931	14	1.9	14	100	0	54	18	44	0	37	1.50
257434--257512	26	3.0	27	80	7	101	26	27	17	27	1.98
257667--257780	27	4.0	27	75	16	104	31	18	26	23	1.97
257667--257790	60	2.1	60	87	3	178	31	17	26	24	1.97
260830--261198	131	2.8	131	84	0	452	40	16	11	32	1.84
263250--263299	3	16.7	3	100	0	100	68	0	0	32	0.90
271635--272000	128	2.8	128	84	1	480	41	15	10	31	1.81
271635--271976	131	2.6	131	85	1	474	41	16	10	32	1.82
273630--273683	18	3.0	18	100	0	108	22	5	5	66	1.34
275450--275488	17	2.2	18	86	4	53	20	10	2	66	1.33
275535--275578	22	2.0	22	86	0	61	22	6	0	70	1.11
275626--275719	38	2.5	37	80	10	102	14	10	1	73	1.15
283421--284009	270	2.2	270	90	1	923	35	23	16	24	1.95
284512--284670	85	1.9	87	84	5	216	31	1	13	53	1.50
285119--285161	18	2.4	18	80	0	50	23	6	0	69	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285209--285256	12	4.2	12	78	10	55	20	10	0	68	1.18
287811--287850	20	2.0	20	100	0	80	50	25	10	15	1.74
292247--292291	22	2.0	22	86	0	63	53	15	11	20	1.72
292877--292902	3	8.7	3	100	0	52	69	0	0	30	0.89
293776--294161	37	9.4	41	72	16	112	46	5	2	44	1.41
293779--293865	41	2.1	41	80	6	95	49	4	3	42	1.40
293828--293963	31	4.2	31	78	11	130	46	5	3	44	1.43
293891--294236	37	9.2	37	80	9	342	44	6	3	45	1.46
293806--294198	38	10.6	37	79	11	339	44	5	3	46	1.44
293891--294236	75	4.6	75	83	6	373	44	6	3	45	1.46
294084--294108	11	2.3	11	100	0	50	44	8	8	40	1.63
294231--294305	2	38.0	2	91	2	125	49	1	1	48	1.18
294968--295607	84	7.7	83	79	7	633	24	19	25	30	1.98
294947--295606	252	2.7	247	87	3	907	24	19	25	30	1.98
295712--296473	110	7.0	110	90	2	1121	25	17	23	34	1.96
300203--300268	16	4.1	16	76	16	57	72	0	3	24	0.98
300216--300309	5	18.4	5	72	12	50	70	3	5	21	1.22
300204--300246	8	5.4	8	84	15	54	74	0	0	25	0.82
300296--300329	13	2.7	13	86	4	52	73	0	8	17	1.08
301504--301552	4	13.5	4	79	16	54	73	0	2	24	0.94
301509--301562	17	3.4	17	72	15	60	72	0	1	25	0.95
301504--301562	14	4.5	14	78	17	65	72	0	1	25	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301504--301562	27	2.2	28	82	11	81	72	0	1	25	0.93
301615--301749	30	4.2	31	78	13	139	45	5	3	45	1.45
301677--302009	37	9.2	37	78	15	286	44	6	3	46	1.43
301677--301882	75	2.7	75	89	4	308	45	4	3	46	1.41
301816--301935	63	1.9	63	92	0	204	49	5	1	43	1.36
301857--301932	36	2.1	36	85	0	98	47	5	1	46	1.33
301842--301896	27	2.0	27	89	0	83	50	5	1	41	1.36
302004--302070	2	35.0	2	80	8	77	50	1	2	44	1.26
301738--302045	139	2.2	136	79	10	293	45	6	2	45	1.43
302020--302079	31	1.9	31	93	0	102	56	1	1	40	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21